Wall clock time and date at job start Tue Mar 31 2020 07:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00016 * 2 1 4 4 C 1.53009 * 109.46806 * 125.00344 * 3 2 1 5 5 C 1.52993 * 109.47209 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46971 * 179.97438 * 5 4 3 7 7 C 1.34779 * 119.99811 * 179.97438 * 6 5 4 8 8 S 1.71203 * 119.99877 * 5.08236 * 7 6 5 9 9 N 1.34775 * 120.00223 * 185.07642 * 7 6 5 10 10 C 1.46926 * 120.63268 * 174.92976 * 9 7 6 11 11 C 1.53185 * 108.89162 * 233.67366 * 10 9 7 12 12 C 1.53042 * 109.31593 * 305.29317 * 11 10 9 13 13 C 1.53042 * 109.53496 * 61.36891 * 12 11 10 14 14 H 1.08994 * 109.49962 * 58.61742 * 13 12 11 15 15 C 1.50699 * 109.49668 * 178.68808 * 13 12 11 16 16 H 1.08003 * 120.00384 * 359.97438 * 15 13 12 17 17 C 1.37875 * 120.00003 * 179.97438 * 15 13 12 18 18 N 1.31517 * 120.00212 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99809 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47221 * 59.99988 * 19 17 15 21 21 H 1.48509 * 109.46787 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47461 * 299.99570 * 19 17 15 23 23 C 1.47206 * 120.80857 * 355.06760 * 9 7 6 24 24 H 1.07998 * 120.00172 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99572 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.99572 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47543 * 5.01088 * 3 2 1 28 28 H 1.09000 * 109.47511 * 245.00113 * 3 2 1 29 29 H 1.08996 * 109.46876 * 59.99911 * 4 3 2 30 30 H 1.09000 * 109.46897 * 300.00145 * 4 3 2 31 31 H 1.09000 * 109.46670 * 60.00164 * 5 4 3 32 32 H 1.08996 * 109.47132 * 300.00345 * 5 4 3 33 33 H 0.96990 * 120.00214 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.58080 * 113.81739 * 10 9 7 35 35 H 1.09001 * 109.58440 * 353.53758 * 10 9 7 36 36 H 1.08999 * 109.50208 * 65.24803 * 11 10 9 37 37 H 1.09002 * 109.49809 * 185.34468 * 11 10 9 38 38 H 1.09003 * 109.45881 * 181.38638 * 12 11 10 39 39 H 1.08997 * 109.46038 * 301.34554 * 12 11 10 40 40 H 0.96997 * 120.00044 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.53753 * 6.53771 * 23 9 7 42 42 H 1.09000 * 109.67933 * 246.22940 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3330 1.1817 5 6 3.8007 2.6576 1.1814 6 7 4.7305 2.6845 2.3132 7 6 5.5161 3.7610 2.5144 8 16 5.3365 5.1483 1.5274 9 7 6.4430 3.7454 3.4927 10 6 7.3804 4.8653 3.6538 11 6 8.8112 4.3181 3.6553 12 6 8.9383 3.2364 4.7304 13 6 7.9812 2.0849 4.4135 14 1 8.2160 1.6768 3.4305 15 6 8.1303 1.0059 5.4549 16 1 8.8372 1.1284 6.2622 17 6 7.3641 -0.1378 5.3771 18 7 6.5029 -0.2868 4.3944 19 14 7.5494 -1.4756 6.6676 20 1 7.2289 -0.9195 8.0067 21 1 6.6195 -2.5920 6.3602 22 1 8.9466 -1.9788 6.6620 23 6 6.5409 2.6068 4.4205 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3587 2.1317 0.0898 28 1 2.6213 1.4027 -0.9314 29 1 3.7400 0.5064 1.0920 30 1 2.4774 1.2354 2.1130 31 1 3.0960 3.4844 1.2708 32 1 4.3584 2.7547 0.2500 33 1 4.7813 1.9273 2.9172 34 1 7.1828 5.3743 4.5971 35 1 7.2579 5.5659 2.8278 36 1 9.0378 3.8893 2.6792 37 1 9.5098 5.1271 3.8689 38 1 9.9620 2.8626 4.7503 39 1 8.6876 3.6597 5.7030 40 1 5.9637 -1.0913 4.3399 41 1 5.8639 1.8154 4.0990 42 1 6.2741 2.9293 5.4269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247742298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:04 Heat of formation + Delta-G solvation = 12.013025 kcal Electronic energy + Delta-G solvation = -20346.004367 eV Core-core repulsion = 17451.610952 eV Total energy + Delta-G solvation = -2894.393415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.36336 -37.17697 -35.52884 -33.81072 -32.56593 -30.81576 -30.06005 -26.48595 -25.64761 -24.61665 -22.31530 -21.67951 -21.37138 -19.88612 -19.16504 -17.52335 -16.83176 -16.39747 -15.82944 -15.03133 -14.84257 -14.46857 -14.11270 -13.92242 -13.77706 -13.50856 -13.18338 -12.83335 -12.70731 -12.13591 -12.07665 -11.75126 -11.31286 -11.24434 -11.14362 -10.94247 -10.76646 -10.75043 -10.65205 -10.45962 -10.38582 -10.02837 -9.46412 -9.44605 -9.27237 -8.73576 -8.22419 -7.24065 -6.94385 -6.37415 -4.41680 2.05639 2.15685 2.51856 3.12872 3.18823 3.20524 3.22095 3.85590 4.18605 4.67185 4.89462 4.98213 5.13243 5.23312 5.28426 5.42490 5.47315 5.58634 5.64373 5.68215 5.79329 5.89024 5.97816 6.08787 6.12565 6.13264 6.20509 6.30587 6.43639 6.49264 6.54233 6.58574 6.65648 6.70517 6.79690 7.04740 7.15963 7.38466 7.51722 7.67465 7.87960 8.07480 8.62830 9.25658 10.70747 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011118 B = 0.005963 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.788574 B = 4694.118233 C = 7041.168197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.089 4.089 4 C -0.130 4.130 5 C 0.129 3.871 6 N -0.687 5.687 7 C 0.577 3.423 8 S -0.714 6.714 9 N -0.556 5.556 10 C 0.103 3.897 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.042 3.958 14 H 0.033 0.967 15 C -0.514 4.514 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.094 3.906 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.265 0.735 41 H 0.108 0.892 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 1.104 -3.775 7.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.166 4.166 3 C -0.126 4.126 4 C -0.169 4.169 5 C 0.005 3.995 6 N -0.320 5.320 7 C 0.214 3.786 8 S -0.587 6.587 9 N -0.262 5.262 10 C -0.020 4.020 11 C -0.170 4.170 12 C -0.152 4.152 13 C 0.022 3.978 14 H 0.051 0.949 15 C -0.552 4.552 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.029 4.029 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.225 1.800 -4.446 7.858 hybrid contribution 0.150 -2.035 1.578 2.580 sum -6.075 -0.235 -2.868 6.722 Atomic orbital electron populations 1.23840 0.95980 1.01722 1.02113 1.22985 0.96021 0.98616 0.99009 1.20639 0.97970 0.95521 0.98503 1.21777 0.98413 0.97425 0.99240 1.21590 0.91602 0.97852 0.88478 1.45167 1.38902 1.17195 1.30762 1.21945 0.81502 0.89598 0.85602 1.93012 1.86078 1.24744 1.54880 1.47801 1.28626 1.21840 1.27981 1.22137 0.87543 0.88365 1.03945 1.21946 0.95141 0.99244 1.00692 1.21665 1.00519 0.95993 0.96989 1.18959 0.88599 0.92021 0.98202 0.94868 1.21127 1.22083 1.01325 1.10679 0.91950 1.24999 0.94944 0.98181 0.95701 1.69742 1.24561 1.28277 1.31199 0.86525 0.78246 0.80954 0.81612 1.20102 1.21149 1.20059 1.22735 1.04034 0.85456 0.90704 0.88689 0.88612 0.87313 0.91089 0.90453 0.90672 0.91192 0.90026 0.90263 0.74877 0.91390 0.86567 0.91923 0.91375 0.92554 0.92916 0.92480 0.87473 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 14.32 29.01 0.42 -1.41 16 2 C -0.15 -1.47 9.52 -36.03 -0.34 -1.81 16 3 C -0.09 -0.90 5.66 -27.88 -0.16 -1.05 16 4 C -0.13 -1.55 5.31 -26.73 -0.14 -1.69 16 5 C 0.13 1.85 5.14 -4.04 -0.02 1.83 16 6 N -0.69 -11.81 5.47 -62.03 -0.34 -12.15 16 7 C 0.58 11.21 7.71 -86.92 -0.67 10.54 16 8 S -0.71 -15.18 27.03 -107.50 -2.91 -18.08 16 9 N -0.56 -10.61 2.98 -174.56 -0.52 -11.13 16 10 C 0.10 1.78 6.29 -3.71 -0.02 1.76 16 11 C -0.13 -2.16 6.08 -26.61 -0.16 -2.33 16 12 C -0.11 -2.12 5.11 -26.69 -0.14 -2.25 16 13 C 0.04 0.91 2.25 -91.65 -0.21 0.71 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.51 -12.44 8.56 -34.44 -0.29 -12.73 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 18 N -0.90 -22.01 11.40 55.43 0.63 -21.38 16 19 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.09 1.92 5.41 -3.55 -0.02 1.90 16 24 H 0.09 0.77 8.06 -52.49 -0.42 0.35 16 25 H 0.10 0.81 7.84 -52.49 -0.41 0.40 16 26 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 32 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 33 H 0.41 7.22 5.95 -40.82 -0.24 6.98 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.12 2.10 6.00 -50.50 -0.30 1.80 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 41 H 0.11 2.30 3.71 -51.93 -0.19 2.11 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -26.68 345.27 -11.81 -38.49 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.00 Total: 9.89 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.85 Total: -5.09 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.23 Total: -44.66 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: -15.18 SS G_CDS: -2.91 Total: -18.08 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.68 -11.81 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247742298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.498 kcal (2) G-P(sol) polarization free energy of solvation -26.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds