Wall clock time and date at job start Tue Mar 31 2020 07:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00169 * 2 1 4 4 C 1.52999 * 109.47124 * 125.00265 * 3 2 1 5 5 C 1.52996 * 109.46695 * 180.02562 * 4 3 2 6 6 N 1.46509 * 109.47132 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99865 * 180.02562 * 6 5 4 8 8 S 1.71195 * 120.00317 * 5.07413 * 7 6 5 9 9 N 1.34775 * 119.99548 * 185.07796 * 7 6 5 10 10 C 1.46929 * 120.63294 * 174.91913 * 9 7 6 11 11 C 1.53197 * 108.89384 * 233.56017 * 10 9 7 12 12 C 1.53068 * 109.29180 * 305.57453 * 11 10 9 13 13 C 1.50706 * 109.44165 * 181.23888 * 12 11 10 14 14 H 1.07995 * 119.99960 * 239.79944 * 13 12 11 15 15 C 1.37871 * 119.99998 * 59.79280 * 13 12 11 16 16 N 1.31522 * 120.00011 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00251 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47069 * 60.00104 * 17 15 13 19 19 H 1.48503 * 109.47285 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47068 * 300.00217 * 17 15 13 21 21 C 1.53042 * 109.66106 * 61.15397 * 12 11 10 22 22 C 1.46926 * 120.63033 * 354.94151 * 9 7 6 23 23 H 1.07998 * 120.00088 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.99886 * 180.02562 * 1 2 3 25 25 H 1.08004 * 119.99967 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46959 * 4.99663 * 3 2 1 27 27 H 1.08998 * 109.46849 * 245.00676 * 3 2 1 28 28 H 1.08989 * 109.47131 * 59.99850 * 4 3 2 29 29 H 1.09002 * 109.46987 * 299.99270 * 4 3 2 30 30 H 1.09005 * 109.47391 * 59.99816 * 5 4 3 31 31 H 1.09003 * 109.47299 * 299.99860 * 5 4 3 32 32 H 0.97000 * 119.99583 * 0.02562 * 6 5 4 33 33 H 1.09002 * 109.58399 * 353.41618 * 10 9 7 34 34 H 1.08995 * 109.58664 * 113.69589 * 10 9 7 35 35 H 1.08994 * 109.49673 * 65.38668 * 11 10 9 36 36 H 1.08996 * 109.49468 * 185.48134 * 11 10 9 37 37 H 1.09005 * 109.35033 * 301.12665 * 12 11 10 38 38 H 0.96998 * 119.99930 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.49959 * 178.74403 * 21 12 11 40 40 H 1.09001 * 109.52120 * 58.66498 * 21 12 11 41 41 H 1.09004 * 109.58676 * 246.15428 * 22 9 7 42 42 H 1.08993 * 109.58972 * 6.43755 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1819 6 7 4.7296 2.6854 2.3136 7 6 5.5136 3.7628 2.5159 8 16 5.3321 5.1507 1.5303 9 7 6.4406 3.7474 3.4941 10 6 7.3766 4.8683 3.6562 11 6 8.8081 4.3226 3.6600 12 6 8.9323 3.2362 4.7312 13 6 10.3473 2.7183 4.7586 14 1 10.5438 1.6737 4.5672 15 6 11.3910 3.5780 5.0278 16 7 11.1517 4.8500 5.2612 17 14 13.1449 2.9362 5.0611 18 1 13.4868 2.3610 3.7353 19 1 14.0745 4.0518 5.3718 20 1 13.2678 1.8853 6.1031 21 6 7.9745 2.0862 4.4117 22 6 6.5347 2.6092 4.4185 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6212 1.4026 -0.9314 28 1 3.7400 0.5065 1.0920 29 1 2.4773 1.2356 2.1130 30 1 3.0944 3.4846 1.2717 31 1 4.3574 2.7562 0.2505 32 1 4.7810 1.9279 2.9173 33 1 7.2547 5.5685 2.8298 34 1 7.1771 5.3775 4.5990 35 1 9.0374 3.8960 2.6836 36 1 9.5053 5.1319 3.8768 37 1 8.6813 3.6582 5.7044 38 1 11.8860 5.4547 5.4510 39 1 8.0811 1.3043 5.1637 40 1 8.2091 1.6793 3.4281 41 1 6.2682 2.9327 5.4247 42 1 5.8554 1.8200 4.0966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247742624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:29 Heat of formation + Delta-G solvation = 19.300417 kcal Electronic energy + Delta-G solvation = -19838.014347 eV Core-core repulsion = 16943.936937 eV Total energy + Delta-G solvation = -2894.077410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.64309 -37.40130 -35.76437 -33.94088 -31.96318 -31.18337 -30.22269 -27.10089 -25.67647 -24.02240 -22.69409 -22.03452 -21.39999 -20.12377 -19.18712 -17.87327 -16.94865 -16.35641 -16.13078 -15.29096 -14.87213 -14.65330 -14.34207 -14.14701 -13.81037 -13.29070 -13.26814 -12.94394 -12.67873 -12.38607 -12.16316 -11.89522 -11.54781 -11.32638 -11.19123 -11.03212 -10.84491 -10.82297 -10.70479 -10.55703 -10.18233 -9.70317 -9.69338 -9.39047 -9.08568 -8.53983 -8.40656 -7.40035 -7.03228 -6.10119 -4.17765 1.77422 1.92279 2.27519 2.95312 3.25318 3.31342 3.32877 3.45344 4.34419 4.38537 4.59653 4.82249 4.90580 4.96535 4.99816 5.19823 5.30696 5.38005 5.40539 5.49822 5.56235 5.64305 5.76798 5.82368 5.92828 6.07928 6.15802 6.26400 6.30113 6.31953 6.42081 6.50075 6.62833 6.78967 6.92461 7.12821 7.25165 7.54675 7.59965 7.79481 7.95709 8.28432 8.84601 9.48064 10.95439 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.003302 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.523835 B = 8478.896963 C = 9103.567594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.090 4.090 4 C -0.129 4.129 5 C 0.127 3.873 6 N -0.698 5.698 7 C 0.568 3.432 8 S -0.681 6.681 9 N -0.548 5.548 10 C 0.098 3.902 11 C -0.121 4.121 12 C 0.048 3.952 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.278 1.278 21 C -0.122 4.122 22 C 0.094 3.906 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.394 0.606 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.111 0.889 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 -9.038 -4.985 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.128 4.128 4 C -0.167 4.167 5 C 0.003 3.997 6 N -0.332 5.332 7 C 0.207 3.793 8 S -0.553 6.553 9 N -0.254 5.254 10 C -0.023 4.023 11 C -0.160 4.160 12 C 0.029 3.971 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.160 4.160 22 C -0.031 4.031 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.233 0.767 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.129 0.871 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.490 -7.987 -5.552 19.145 hybrid contribution 1.088 -1.548 0.905 2.098 sum -15.401 -9.536 -4.647 18.701 Atomic orbital electron populations 1.23881 0.95997 1.01900 1.01429 1.22953 0.96042 0.98447 0.99651 1.20640 0.98016 0.95708 0.98415 1.21776 0.98346 0.97106 0.99479 1.21638 0.91665 0.97952 0.88423 1.45059 1.40183 1.16853 1.31097 1.22124 0.81341 0.89913 0.85961 1.93206 1.84775 1.24056 1.53294 1.47641 1.29251 1.21489 1.27048 1.22613 0.89049 0.87112 1.03575 1.22067 0.91997 1.02570 0.99332 1.18679 0.93357 0.90338 0.94723 1.21070 0.91012 0.94990 1.48526 0.92757 1.24959 0.99117 0.94901 0.94874 1.69815 1.32055 1.03136 1.47629 0.86650 0.84366 0.78423 0.78524 1.20279 1.21184 1.20325 1.22031 0.91810 1.00636 1.01533 1.22138 1.00237 0.87398 0.93331 0.88492 0.88587 0.87392 0.90873 0.90305 0.91161 0.91258 0.89707 0.89991 0.76669 0.86992 0.91300 0.94032 0.87067 0.95316 0.92683 0.91461 0.92595 0.90319 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 14.32 29.01 0.42 -0.85 16 2 C -0.15 -1.04 9.52 -36.02 -0.34 -1.38 16 3 C -0.09 -0.63 5.66 -27.88 -0.16 -0.79 16 4 C -0.13 -0.96 5.31 -26.73 -0.14 -1.10 16 5 C 0.13 1.35 5.14 -4.04 -0.02 1.33 16 6 N -0.70 -8.63 5.47 -62.03 -0.34 -8.97 16 7 C 0.57 9.44 7.71 -86.92 -0.67 8.77 16 8 S -0.68 -13.77 27.03 -107.50 -2.91 -16.68 16 9 N -0.55 -9.26 2.97 -174.79 -0.52 -9.78 16 10 C 0.10 1.89 6.30 -3.71 -0.02 1.87 16 11 C -0.12 -2.69 5.16 -26.59 -0.14 -2.83 16 12 C 0.05 1.07 2.06 -91.71 -0.19 0.88 16 13 C -0.52 -13.30 8.56 -34.44 -0.29 -13.60 16 14 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -24.12 11.30 55.43 0.63 -23.50 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.12 -2.17 5.30 -26.61 -0.14 -2.31 16 22 C 0.09 1.37 6.43 -3.71 -0.02 1.34 16 23 H 0.10 0.60 7.84 -52.49 -0.41 0.18 16 24 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 25 H 0.11 0.67 8.06 -52.48 -0.42 0.24 16 26 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.50 8.14 -51.94 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.00 7.89 -51.93 -0.41 0.59 16 31 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.39 3.96 5.93 -40.82 -0.24 3.71 16 33 H 0.11 2.30 6.00 -50.53 -0.30 2.00 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 2.79 6.03 -51.93 -0.31 2.48 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.69 5.56 -51.93 -0.29 0.40 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -29.74 344.98 -11.77 -41.50 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.98 Total: 3.81 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.82 Total: -7.09 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.23 Total: -42.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -13.77 SS G_CDS: -2.91 Total: -16.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.74 -11.77 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247742624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.804 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds