Wall clock time and date at job start Tue Mar 31 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 S 1.71198 * 120.00142 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99768 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99649 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.41471 * 325.00026 * 10 9 7 12 12 C 1.52963 * 109.41073 * 84.85720 * 10 9 7 13 13 C 1.53245 * 109.39602 * 183.77043 * 12 10 9 14 14 C 1.51268 * 108.48437 * 305.27100 * 13 12 10 15 15 C 1.37882 * 120.84430 * 231.36659 * 14 13 12 16 16 N 1.31522 * 119.99584 * 180.02562 * 15 14 13 17 17 Si 1.86800 * 120.00427 * 0.02562 * 15 14 13 18 18 H 1.48500 * 109.47070 * 89.99864 * 17 15 14 19 19 H 1.48499 * 109.46918 * 210.00261 * 17 15 14 20 20 H 1.48503 * 109.46700 * 329.99885 * 17 15 14 21 21 C 1.51269 * 118.30193 * 51.38826 * 14 13 12 22 22 C 1.52960 * 109.41394 * 205.14218 * 10 9 7 23 23 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 24 24 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 27 27 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 28 28 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 29 29 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 30 30 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 31 31 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 32 32 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 33 33 H 0.96992 * 119.99896 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.48723 * 303.68285 * 12 10 9 35 35 H 1.09002 * 109.47801 * 63.72711 * 12 10 9 36 36 H 1.09000 * 109.61685 * 185.59094 * 13 12 10 37 37 H 1.09001 * 109.84457 * 65.08175 * 13 12 10 38 38 H 0.96999 * 119.99922 * 179.97438 * 16 15 14 39 39 H 1.08999 * 109.62279 * 188.93835 * 21 14 13 40 40 H 1.08999 * 109.62120 * 68.36690 * 21 14 13 41 41 H 1.08999 * 109.47901 * 296.27914 * 22 10 9 42 42 H 1.09000 * 109.48298 * 56.31751 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1819 6 7 4.7302 2.6850 2.3130 7 6 5.5152 3.7618 2.5146 8 16 5.4252 5.0984 1.4486 9 7 6.3710 3.7865 3.5556 10 6 7.2247 4.9568 3.7744 11 1 7.5198 5.3750 2.8121 12 6 6.4505 6.0091 4.5701 13 6 7.3097 7.2694 4.7177 14 6 8.6356 6.8768 5.3310 15 6 9.1261 7.5376 6.4373 16 7 10.2811 7.1828 6.9566 17 14 8.1502 8.9369 7.1983 18 1 7.2357 8.3957 8.2356 19 1 9.0835 9.9103 7.8202 20 1 7.3558 9.6170 6.1440 21 6 9.4097 5.7410 4.6993 22 6 8.4739 4.5369 4.5509 23 1 -0.5401 -0.9352 -0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 3.7399 0.5065 1.0922 29 1 2.4772 1.2357 2.1130 30 1 4.3574 2.7563 0.2506 31 1 3.0944 3.4846 1.2716 32 1 4.7815 1.9275 2.9169 33 1 6.4217 3.0294 4.1597 34 1 5.5292 6.2580 4.0435 35 1 6.2100 5.6141 5.5572 36 1 6.8032 7.9836 5.3669 37 1 7.4778 7.7193 3.7392 38 1 10.6264 7.6479 7.7346 39 1 10.2524 5.4734 5.3367 40 1 9.7719 6.0464 3.7177 41 1 8.1843 4.1776 5.5383 42 1 8.9875 3.7417 4.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247782716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:13 Heat of formation + Delta-G solvation = 5.879643 kcal Electronic energy + Delta-G solvation = -19569.420899 eV Core-core repulsion = 16674.761521 eV Total energy + Delta-G solvation = -2894.659378 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.15927 -37.46245 -36.01209 -34.24655 -32.08608 -30.99180 -29.71510 -27.53379 -25.89724 -23.56579 -22.48662 -21.70406 -21.51473 -20.21242 -19.64100 -18.00333 -16.96524 -16.20787 -15.99187 -15.37593 -14.92310 -14.63524 -14.45166 -14.07724 -13.73846 -13.32692 -12.97581 -12.66868 -12.35092 -12.14766 -12.12065 -11.96543 -11.55204 -11.25860 -11.21801 -10.98914 -10.81032 -10.75076 -10.62068 -10.15472 -10.01322 -9.74582 -9.60431 -9.09229 -8.90202 -8.53187 -8.47089 -7.48967 -7.01830 -6.11149 -4.01279 1.70425 1.87003 2.26248 2.84206 3.28048 3.37306 3.41377 3.74792 4.32110 4.39492 4.53024 4.75618 4.88041 4.93916 5.17275 5.23618 5.32042 5.51040 5.53136 5.63088 5.74982 5.78713 5.82890 5.99724 6.21079 6.23593 6.36826 6.41760 6.47117 6.54420 6.72215 6.89268 6.93076 6.96178 7.13566 7.27681 7.47859 7.55003 7.64054 7.72252 7.81063 8.36868 8.95350 9.54572 10.98392 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.037672 B = 0.003009 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.086326 B = 9304.241576 C = 9490.199994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.091 4.091 4 C -0.128 4.128 5 C 0.127 3.873 6 N -0.698 5.698 7 C 0.561 3.439 8 S -0.653 6.653 9 N -0.673 5.673 10 C 0.151 3.849 11 H 0.108 0.892 12 C -0.110 4.110 13 C -0.011 4.011 14 C -0.488 4.488 15 C 0.075 3.925 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.265 1.265 21 C 0.015 3.985 22 C -0.115 4.115 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.393 0.607 33 H 0.390 0.610 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.031 0.969 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.062 0.938 40 H 0.010 0.990 41 H 0.052 0.948 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.411 -15.457 -8.368 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.128 4.128 4 C -0.166 4.166 5 C 0.003 3.997 6 N -0.330 5.330 7 C 0.200 3.800 8 S -0.528 6.528 9 N -0.298 5.298 10 C 0.049 3.951 11 H 0.126 0.874 12 C -0.150 4.150 13 C -0.049 4.049 14 C -0.508 4.508 15 C -0.127 4.127 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.190 1.190 21 C -0.023 4.023 22 C -0.154 4.154 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.228 0.772 33 H 0.226 0.774 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.311 -14.417 -8.990 22.214 hybrid contribution -0.445 -0.833 1.742 1.982 sum -14.755 -15.250 -7.248 22.423 Atomic orbital electron populations 1.23895 0.96013 1.01950 1.01240 1.22938 0.96043 0.98401 0.99829 1.20642 0.98048 0.95749 0.98392 1.21776 0.98336 0.97015 0.99524 1.21640 0.91486 0.97951 0.88592 1.44956 1.39824 1.16936 1.31258 1.22264 0.81113 0.89550 0.87049 1.93396 1.83870 1.28376 1.47169 1.45790 1.37295 1.21744 1.25000 1.21668 0.88961 0.82675 1.01843 0.87404 1.21870 0.98308 0.97267 0.97510 1.19685 0.94719 0.92742 0.97740 1.20072 1.02950 1.16178 1.11554 1.24844 0.94922 0.96784 0.96155 1.69834 1.18736 1.41281 1.23048 0.86655 0.79831 0.82555 0.79350 1.20556 1.21661 1.18957 1.19324 0.95185 0.91043 0.96744 1.21994 0.95339 1.00202 0.97837 0.88572 0.88451 0.87434 0.90839 0.90289 0.91224 0.91262 0.89734 0.89776 0.77156 0.77447 0.93124 0.93662 0.95075 0.95607 0.92616 0.91987 0.97195 0.92883 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 14.32 29.01 0.42 -0.75 16 2 C -0.15 -0.94 9.52 -36.03 -0.34 -1.28 16 3 C -0.09 -0.56 5.66 -27.89 -0.16 -0.72 16 4 C -0.13 -0.81 5.31 -26.73 -0.14 -0.95 16 5 C 0.13 1.19 5.13 -4.04 -0.02 1.17 16 6 N -0.70 -7.23 5.56 -62.03 -0.34 -7.58 16 7 C 0.56 8.39 7.95 -86.91 -0.69 7.70 16 8 S -0.65 -12.81 26.58 -107.50 -2.86 -15.67 16 9 N -0.67 -9.90 5.08 -55.56 -0.28 -10.18 16 10 C 0.15 2.84 2.12 -67.97 -0.14 2.70 16 11 H 0.11 2.31 6.81 -51.93 -0.35 1.96 16 12 C -0.11 -2.29 5.44 -26.62 -0.14 -2.43 16 13 C -0.01 -0.25 5.60 -27.48 -0.15 -0.41 16 14 C -0.49 -12.69 5.51 -98.92 -0.55 -13.24 16 15 C 0.08 2.04 5.46 -17.81 -0.10 1.94 16 16 N -0.89 -25.27 12.73 55.43 0.71 -24.57 16 17 Si 0.89 21.20 27.27 -169.99 -4.64 16.56 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.26 -6.22 6.46 56.52 0.37 -5.86 16 21 C 0.01 0.36 5.97 -27.49 -0.16 0.20 16 22 C -0.12 -2.26 5.40 -26.64 -0.14 -2.41 16 23 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 24 H 0.10 0.56 7.84 -52.48 -0.41 0.15 16 25 H 0.11 0.58 8.06 -52.49 -0.42 0.15 16 26 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.90 7.99 -51.93 -0.41 0.48 16 31 H 0.08 0.91 7.99 -51.93 -0.42 0.50 16 32 H 0.39 2.87 8.49 -40.82 -0.35 2.52 16 33 H 0.39 4.50 8.62 -40.82 -0.35 4.15 16 34 H 0.05 1.06 7.49 -51.93 -0.39 0.67 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -31.01 345.71 -11.64 -42.65 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.10 Total: 2.05 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.33 Total: -8.48 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.08 Total: -42.32 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.64 Total: 16.56 kcal Atomic # 16 Polarization: -12.81 SS G_CDS: -2.86 Total: -15.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.01 -11.64 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247782716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.532 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds