Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00134 * 2 1 4 4 C 1.52992 * 109.47592 * 124.99866 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 S 1.71202 * 120.00438 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99489 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99511 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.41619 * 34.99922 * 10 9 7 12 12 C 1.52968 * 109.41077 * 154.86149 * 10 9 7 13 13 C 1.53230 * 109.40358 * 183.70374 * 12 10 9 14 14 C 1.51272 * 108.53480 * 305.36972 * 13 12 10 15 15 C 1.37880 * 120.84774 * 231.37323 * 14 13 12 16 16 N 1.31510 * 120.00083 * 359.97438 * 15 14 13 17 17 Si 1.86798 * 119.99575 * 180.02562 * 15 14 13 18 18 H 1.48496 * 109.47343 * 90.00086 * 17 15 14 19 19 H 1.48503 * 109.46667 * 209.99565 * 17 15 14 20 20 H 1.48491 * 109.47336 * 329.99305 * 17 15 14 21 21 C 1.51272 * 118.29975 * 51.34602 * 14 13 12 22 22 C 1.52957 * 109.41370 * 275.13714 * 10 9 7 23 23 H 1.08003 * 120.00157 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99702 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47210 * 4.99547 * 3 2 1 27 27 H 1.09001 * 109.46665 * 244.99806 * 3 2 1 28 28 H 1.09002 * 109.47103 * 59.99616 * 4 3 2 29 29 H 1.08998 * 109.46862 * 300.00428 * 4 3 2 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 32 32 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 33 33 H 0.97003 * 120.00377 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47755 * 303.68008 * 12 10 9 35 35 H 1.08998 * 109.48458 * 63.72013 * 12 10 9 36 36 H 1.08995 * 109.62408 * 65.08084 * 13 12 10 37 37 H 1.08995 * 109.62633 * 185.46450 * 13 12 10 38 38 H 0.96994 * 120.00018 * 180.02562 * 16 15 14 39 39 H 1.09000 * 109.62223 * 68.36797 * 21 14 13 40 40 H 1.09004 * 109.62304 * 188.93742 * 21 14 13 41 41 H 1.09002 * 109.48304 * 296.28268 * 22 10 9 42 42 H 1.09002 * 109.48077 * 56.31585 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.8005 2.6579 1.1812 6 7 4.7303 2.6850 2.3130 7 6 5.5158 3.7615 2.5141 8 16 5.4266 5.0976 1.4474 9 7 6.3716 3.7862 3.5550 10 6 7.2251 4.9567 3.7739 11 1 6.6837 5.8584 3.4879 12 6 7.6048 5.0393 5.2534 13 6 8.4202 6.3132 5.4993 14 6 9.5994 6.3198 4.5518 15 6 10.8806 6.5226 5.0190 16 7 11.0896 6.7142 6.3032 17 14 12.3194 6.5267 3.8276 18 1 12.5478 7.9078 3.3321 19 1 13.5389 6.0423 4.5228 20 1 12.0153 5.6333 2.6812 21 6 9.3369 6.0975 3.0787 22 6 8.4891 4.8307 2.9220 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 3.7400 0.5066 1.0921 29 1 2.4772 1.2356 2.1129 30 1 3.0959 3.4847 1.2704 31 1 4.3583 2.7548 0.2497 32 1 4.7811 1.9278 2.9171 33 1 6.4225 3.0290 4.1592 34 1 6.6997 5.0643 5.8601 35 1 8.2009 4.1681 5.5250 36 1 7.7970 7.1881 5.3143 37 1 8.7749 6.3277 6.5298 38 1 11.9909 6.8572 6.6318 39 1 8.7986 6.9525 2.6697 40 1 10.2835 5.9717 2.5531 41 1 9.0638 3.9645 3.2499 42 1 8.2112 4.7076 1.8752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247782721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = 6.492911 kcal Electronic energy + Delta-G solvation = -19567.595513 eV Core-core repulsion = 16672.962729 eV Total energy + Delta-G solvation = -2894.632785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.15782 -37.46082 -36.01169 -34.24488 -32.08507 -30.99103 -29.71232 -27.53123 -25.89575 -23.56425 -22.48450 -21.70183 -21.51133 -20.21185 -19.63894 -18.00320 -16.96054 -16.21140 -16.01267 -15.32965 -14.88182 -14.74700 -14.44447 -14.05112 -13.73559 -13.30755 -12.97272 -12.70948 -12.39766 -12.17744 -12.12082 -11.89381 -11.57116 -11.28996 -11.16346 -10.99814 -10.80147 -10.73092 -10.61813 -10.18048 -10.03734 -9.74663 -9.51699 -9.08367 -8.89458 -8.55624 -8.44390 -7.48755 -7.01684 -6.10706 -4.01100 1.70636 1.86919 2.26393 2.84415 3.29506 3.37262 3.39309 3.74817 4.32097 4.39378 4.53094 4.75638 4.88019 4.93949 5.17007 5.23756 5.31984 5.51016 5.53282 5.63194 5.75165 5.79259 5.83079 5.99952 6.21292 6.23593 6.36753 6.42413 6.47278 6.54808 6.72960 6.89689 6.93442 6.96986 7.15471 7.28525 7.47768 7.55145 7.64300 7.72010 7.81529 8.37145 8.95467 9.54659 10.98778 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.002987 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.419906 B = 9370.875888 C = 9566.751977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.091 4.091 4 C -0.128 4.128 5 C 0.127 3.873 6 N -0.698 5.698 7 C 0.562 3.438 8 S -0.653 6.653 9 N -0.673 5.673 10 C 0.150 3.850 11 H 0.108 0.892 12 C -0.115 4.115 13 C 0.015 3.985 14 C -0.487 4.487 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.264 1.264 21 C -0.016 4.016 22 C -0.109 4.109 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.393 0.607 33 H 0.390 0.610 34 H 0.035 0.965 35 H 0.052 0.948 36 H 0.009 0.991 37 H 0.061 0.939 38 H 0.264 0.736 39 H 0.025 0.975 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 -14.597 -7.175 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.128 4.128 4 C -0.166 4.166 5 C 0.003 3.997 6 N -0.330 5.330 7 C 0.200 3.800 8 S -0.528 6.528 9 N -0.298 5.298 10 C 0.048 3.952 11 H 0.126 0.874 12 C -0.154 4.154 13 C -0.023 4.023 14 C -0.506 4.506 15 C -0.127 4.127 16 N -0.530 5.530 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.189 1.189 21 C -0.055 4.055 22 C -0.148 4.148 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.228 0.772 33 H 0.226 0.774 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.780 -13.555 -7.791 22.214 hybrid contribution 0.933 -1.611 0.620 1.962 sum -14.847 -15.166 -7.171 22.403 Atomic orbital electron populations 1.23893 0.96007 1.01944 1.01269 1.22942 0.96045 0.98408 0.99802 1.20642 0.98042 0.95741 0.98408 1.21774 0.98327 0.97039 0.99510 1.21642 0.91492 0.97942 0.88595 1.44953 1.39890 1.16936 1.31196 1.22261 0.80744 0.89768 0.87197 1.93393 1.85051 1.28005 1.46379 1.45797 1.36985 1.21932 1.25113 1.21675 0.90315 0.85939 0.97231 0.87417 1.21996 0.98496 1.02961 0.91915 1.19321 0.93334 0.90265 0.99358 1.20075 0.91800 1.47934 0.90809 1.24844 0.98263 0.94577 0.95028 1.69830 1.21695 1.48535 1.12895 0.86673 0.81579 0.78895 0.81317 1.20291 1.21785 1.18895 1.19764 0.95740 0.93093 0.96856 1.21848 0.94707 1.00654 0.97634 0.88573 0.88453 0.87433 0.90837 0.90287 0.91228 0.91259 0.89773 0.89737 0.77158 0.77450 0.94651 0.92885 0.97225 0.92026 0.92626 0.95639 0.94592 0.93703 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 14.32 29.01 0.42 -0.74 16 2 C -0.15 -0.94 9.52 -36.03 -0.34 -1.28 16 3 C -0.09 -0.56 5.66 -27.89 -0.16 -0.72 16 4 C -0.13 -0.81 5.31 -26.74 -0.14 -0.95 16 5 C 0.13 1.19 5.13 -4.04 -0.02 1.17 16 6 N -0.70 -7.25 5.56 -62.03 -0.34 -7.59 16 7 C 0.56 8.41 7.95 -86.92 -0.69 7.72 16 8 S -0.65 -12.83 26.58 -107.50 -2.86 -15.68 16 9 N -0.67 -9.93 5.08 -55.56 -0.28 -10.21 16 10 C 0.15 2.85 2.12 -67.97 -0.14 2.70 16 11 H 0.11 2.31 6.81 -51.93 -0.35 1.96 16 12 C -0.11 -2.27 5.40 -26.63 -0.14 -2.41 16 13 C 0.02 0.37 5.96 -27.48 -0.16 0.20 16 14 C -0.49 -12.65 5.51 -98.92 -0.55 -13.19 16 15 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 16 N -0.89 -25.29 12.73 55.43 0.71 -24.58 16 17 Si 0.89 21.11 27.53 -169.99 -4.68 16.43 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.26 -6.11 6.10 56.52 0.34 -5.76 16 21 C -0.02 -0.39 5.59 -27.48 -0.15 -0.54 16 22 C -0.11 -2.27 5.44 -26.63 -0.14 -2.42 16 23 H 0.10 0.49 8.06 -52.48 -0.42 0.06 16 24 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 25 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 26 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.90 7.99 -51.93 -0.42 0.49 16 31 H 0.08 0.91 7.99 -51.93 -0.41 0.50 16 32 H 0.39 2.88 8.49 -40.82 -0.35 2.53 16 33 H 0.39 4.52 8.62 -40.82 -0.35 4.16 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 1.62 7.08 -51.93 -0.37 1.25 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.85 4.59 -51.93 -0.24 0.62 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.05 7.49 -51.93 -0.39 0.66 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -31.00 345.44 -11.70 -42.70 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.11 Total: 2.27 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.33 Total: -8.53 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.08 Total: -42.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.68 Total: 16.43 kcal Atomic # 16 Polarization: -12.83 SS G_CDS: -2.86 Total: -15.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.00 -11.70 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247782721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.192 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds