Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00134 * 2 1 4 4 C 1.52992 * 109.47592 * 124.99866 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 S 1.71202 * 120.00438 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99489 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99511 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.41619 * 34.99922 * 10 9 7 12 12 C 1.52968 * 109.41077 * 154.86149 * 10 9 7 13 13 C 1.53230 * 109.40358 * 183.70374 * 12 10 9 14 14 C 1.51272 * 108.53480 * 305.36972 * 13 12 10 15 15 C 1.37880 * 120.84774 * 231.37323 * 14 13 12 16 16 N 1.31510 * 120.00083 * 359.97438 * 15 14 13 17 17 Si 1.86798 * 119.99575 * 180.02562 * 15 14 13 18 18 H 1.48496 * 109.47343 * 90.00086 * 17 15 14 19 19 H 1.48503 * 109.46667 * 209.99565 * 17 15 14 20 20 H 1.48491 * 109.47336 * 329.99305 * 17 15 14 21 21 C 1.51272 * 118.29975 * 51.34602 * 14 13 12 22 22 C 1.52957 * 109.41370 * 275.13714 * 10 9 7 23 23 H 1.08003 * 120.00157 * 180.02562 * 1 2 3 24 24 H 1.07998 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99702 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47210 * 4.99547 * 3 2 1 27 27 H 1.09001 * 109.46665 * 244.99806 * 3 2 1 28 28 H 1.09002 * 109.47103 * 59.99616 * 4 3 2 29 29 H 1.08998 * 109.46862 * 300.00428 * 4 3 2 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 32 32 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 33 33 H 0.97003 * 120.00377 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47755 * 303.68008 * 12 10 9 35 35 H 1.08998 * 109.48458 * 63.72013 * 12 10 9 36 36 H 1.08995 * 109.62408 * 65.08084 * 13 12 10 37 37 H 1.08995 * 109.62633 * 185.46450 * 13 12 10 38 38 H 0.96994 * 120.00018 * 180.02562 * 16 15 14 39 39 H 1.09000 * 109.62223 * 68.36797 * 21 14 13 40 40 H 1.09004 * 109.62304 * 188.93742 * 21 14 13 41 41 H 1.09002 * 109.48304 * 296.28268 * 22 10 9 42 42 H 1.09002 * 109.48077 * 56.31585 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.8005 2.6579 1.1812 6 7 4.7303 2.6850 2.3130 7 6 5.5158 3.7615 2.5141 8 16 5.4266 5.0976 1.4474 9 7 6.3716 3.7862 3.5550 10 6 7.2251 4.9567 3.7739 11 1 6.6837 5.8584 3.4879 12 6 7.6048 5.0393 5.2534 13 6 8.4202 6.3132 5.4993 14 6 9.5994 6.3198 4.5518 15 6 10.8806 6.5226 5.0190 16 7 11.0896 6.7142 6.3032 17 14 12.3194 6.5267 3.8276 18 1 12.5478 7.9078 3.3321 19 1 13.5389 6.0423 4.5228 20 1 12.0153 5.6333 2.6812 21 6 9.3369 6.0975 3.0787 22 6 8.4891 4.8307 2.9220 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 3.7400 0.5066 1.0921 29 1 2.4772 1.2356 2.1129 30 1 3.0959 3.4847 1.2704 31 1 4.3583 2.7548 0.2497 32 1 4.7811 1.9278 2.9171 33 1 6.4225 3.0290 4.1592 34 1 6.6997 5.0643 5.8601 35 1 8.2009 4.1681 5.5250 36 1 7.7970 7.1881 5.3143 37 1 8.7749 6.3277 6.5298 38 1 11.9909 6.8572 6.6318 39 1 8.7986 6.9525 2.6697 40 1 10.2835 5.9717 2.5531 41 1 9.0638 3.9645 3.2499 42 1 8.2112 4.7076 1.8752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247782721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = -11.370129 kcal Electronic energy + Delta-G solvation = -19568.370113 eV Core-core repulsion = 16672.962729 eV Total energy + Delta-G solvation = -2895.407384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44817 -38.69526 -36.93672 -35.52887 -33.68184 -31.99840 -31.47377 -29.13984 -26.82229 -24.83018 -23.90009 -23.28687 -22.69250 -21.38112 -20.63636 -19.26046 -18.22817 -17.83021 -16.87657 -16.40802 -16.26127 -16.16970 -15.68451 -15.21444 -14.86375 -14.50791 -14.34382 -14.14250 -14.02186 -13.72125 -13.17715 -12.85732 -12.78881 -12.69808 -12.60050 -12.32319 -12.19236 -11.92124 -11.85785 -11.74129 -11.68763 -11.31839 -10.88610 -10.63494 -10.53146 -10.19837 -9.93728 -8.97530 -8.54940 -8.16111 -6.09608 0.44718 0.96777 1.39626 1.40781 1.43407 1.50697 1.63158 2.42249 2.65564 3.12701 3.74475 3.99198 4.01099 4.15501 4.20336 4.36324 4.43001 4.50561 4.65877 4.70546 4.72897 4.76116 4.88124 4.95970 4.97639 5.05334 5.08112 5.17806 5.20506 5.25645 5.30532 5.35988 5.57949 5.61691 5.66998 5.77748 5.79778 5.83018 5.92542 6.02547 6.35943 6.50264 6.95379 7.48507 8.94227 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.002987 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.419906 B = 9370.875888 C = 9566.751977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.114 4.114 5 C 0.127 3.873 6 N -0.666 5.666 7 C 0.584 3.416 8 S -0.744 6.744 9 N -0.660 5.660 10 C 0.168 3.832 11 H 0.083 0.917 12 C -0.101 4.101 13 C 0.010 3.990 14 C -0.495 4.495 15 C 0.025 3.975 16 N -0.928 5.928 17 Si 0.935 3.065 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.252 1.252 21 C -0.018 4.018 22 C -0.100 4.100 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.416 0.584 33 H 0.413 0.587 34 H 0.060 0.940 35 H 0.059 0.941 36 H -0.002 1.002 37 H 0.035 0.965 38 H 0.263 0.737 39 H 0.014 0.986 40 H 0.035 0.965 41 H 0.051 0.949 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 -17.399 -7.513 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.177 4.177 3 C -0.129 4.129 4 C -0.152 4.152 5 C 0.004 3.996 6 N -0.297 5.297 7 C 0.218 3.782 8 S -0.620 6.620 9 N -0.288 5.288 10 C 0.064 3.936 11 H 0.101 0.899 12 C -0.139 4.139 13 C -0.028 4.028 14 C -0.515 4.515 15 C -0.173 4.173 16 N -0.568 5.568 17 Si 0.762 3.238 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.176 1.176 21 C -0.056 4.056 22 C -0.139 4.139 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.256 0.744 33 H 0.252 0.748 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.016 0.984 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.823 -16.434 -8.130 24.884 hybrid contribution 1.125 -0.779 0.731 1.551 sum -15.698 -17.213 -7.399 24.443 Atomic orbital electron populations 1.24039 0.96202 1.02412 1.01011 1.23010 0.96135 0.98535 1.00014 1.20635 0.97992 0.95907 0.98364 1.21678 0.98208 0.95275 1.00040 1.21739 0.90914 0.99523 0.87444 1.44908 1.37775 1.15868 1.31155 1.21645 0.81017 0.89479 0.86023 1.93647 1.87128 1.31823 1.49410 1.45218 1.36380 1.21622 1.25573 1.21116 0.89774 0.86580 0.96125 0.89850 1.21735 0.98893 1.00499 0.92817 1.19273 0.93546 0.92355 0.97630 1.20590 0.92262 1.46463 0.92152 1.25531 1.00657 0.94903 0.96208 1.69944 1.22001 1.50450 1.14397 0.85885 0.79052 0.78866 0.79978 1.20500 1.21645 1.17609 1.19744 0.96211 0.94304 0.95341 1.21687 0.95124 0.99100 0.97997 0.87727 0.88531 0.86516 0.91239 0.90397 0.89789 0.90210 0.91005 0.90930 0.74439 0.74786 0.92127 0.92221 0.98377 0.94593 0.92791 0.96795 0.94695 0.93008 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 14.32 67.78 0.97 -1.03 16 2 C -0.16 -1.57 9.52 25.64 0.24 -1.33 16 3 C -0.09 -0.94 5.66 29.84 0.17 -0.77 16 4 C -0.11 -1.07 5.31 30.59 0.16 -0.91 16 5 C 0.13 2.09 5.13 86.38 0.44 2.54 16 6 N -0.67 -11.61 5.56 -350.16 -1.95 -13.56 16 7 C 0.58 16.09 7.95 179.05 1.42 17.52 16 8 S -0.74 -29.10 26.58 -56.49 -1.50 -30.60 16 9 N -0.66 -17.47 5.08 -329.68 -1.67 -19.15 16 10 C 0.17 6.08 2.12 44.97 0.10 6.18 16 11 H 0.08 3.54 6.81 -2.39 -0.02 3.53 16 12 C -0.10 -3.79 5.40 30.66 0.17 -3.63 16 13 C 0.01 0.49 5.96 30.11 0.18 0.67 16 14 C -0.50 -25.79 5.51 -16.17 -0.09 -25.88 16 15 C 0.03 1.39 5.46 84.66 0.46 1.85 16 16 N -0.93 -53.50 12.73 21.45 0.27 -53.22 16 17 Si 0.94 43.29 27.53 68.60 1.89 45.18 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.25 -11.04 6.10 99.48 0.61 -10.43 16 21 C -0.02 -0.84 5.59 30.11 0.17 -0.67 16 22 C -0.10 -4.01 5.44 30.66 0.17 -3.84 16 23 H 0.10 0.85 8.06 -2.91 -0.02 0.82 16 24 H 0.10 0.95 7.84 -2.91 -0.02 0.93 16 25 H 0.12 0.93 8.06 -2.91 -0.02 0.91 16 26 H 0.07 0.77 7.79 -2.39 -0.02 0.76 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.44 7.99 -2.39 -0.02 1.42 16 31 H 0.07 1.46 7.99 -2.39 -0.02 1.44 16 32 H 0.42 4.09 8.49 -92.71 -0.79 3.31 16 33 H 0.41 7.71 8.62 -92.71 -0.80 6.91 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.04 1.91 7.08 -2.39 -0.02 1.90 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.03 1.63 4.59 -2.38 -0.01 1.61 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.99 7.49 -2.39 -0.02 1.98 16 Total: -1.00 -68.90 345.44 0.92 -67.98 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -0.68 Total: 12.69 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.56 Total: -9.31 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -3.35 Total: -85.93 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.89 Total: 45.18 kcal Atomic # 16 Polarization: -29.10 SS G_CDS: -1.50 Total: -30.60 kcal Total: -68.90 0.92 -67.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247782721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.605 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds