Wall clock time and date at job start Tue Mar 31 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99785 * 2 1 4 4 C 1.53002 * 109.46415 * 125.00533 * 3 2 1 5 5 C 1.53003 * 109.46809 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47087 * 179.97438 * 5 4 3 7 7 C 1.34779 * 119.99791 * 180.02562 * 6 5 4 8 8 S 1.71200 * 120.00151 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99729 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99941 * 185.00471 * 9 7 6 11 11 C 1.50700 * 110.43223 * 300.91062 * 10 9 7 12 12 H 1.08001 * 120.00291 * 122.60194 * 11 10 9 13 13 C 1.37884 * 120.00104 * 302.59639 * 11 10 9 14 14 N 1.31515 * 119.99451 * 355.01284 * 13 11 10 15 15 Si 1.86793 * 120.00250 * 175.00767 * 13 11 10 16 16 H 1.48502 * 109.47407 * 89.99921 * 15 13 11 17 17 H 1.48493 * 109.47390 * 210.00457 * 15 13 11 18 18 H 1.48508 * 109.46918 * 330.00546 * 15 13 11 19 19 C 1.54889 * 110.48722 * 63.58963 * 10 9 7 20 20 C 1.54894 * 102.74720 * 80.73673 * 19 10 9 21 21 C 1.54271 * 104.19141 * 37.94483 * 20 19 10 22 22 C 1.53876 * 106.60162 * 336.38678 * 21 20 19 23 23 H 1.07995 * 120.00216 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.99595 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.99859 * 180.02562 * 2 1 3 26 26 H 1.08992 * 109.47436 * 5.00573 * 3 2 1 27 27 H 1.09001 * 109.47121 * 244.99681 * 3 2 1 28 28 H 1.08999 * 109.47630 * 59.99988 * 4 3 2 29 29 H 1.09001 * 109.47264 * 299.99574 * 4 3 2 30 30 H 1.09008 * 109.46917 * 60.00378 * 5 4 3 31 31 H 1.08991 * 109.47651 * 300.00058 * 5 4 3 32 32 H 0.96999 * 120.00122 * 0.02562 * 6 5 4 33 33 H 0.96998 * 120.00244 * 5.00084 * 9 7 6 34 34 H 0.97003 * 119.99067 * 184.99880 * 14 13 11 35 35 H 1.08994 * 110.75988 * 322.42544 * 19 10 9 36 36 H 1.09002 * 110.75648 * 199.04699 * 19 10 9 37 37 H 1.08991 * 110.48691 * 279.26464 * 20 19 10 38 38 H 1.08997 * 110.48671 * 156.61747 * 20 19 10 39 39 H 1.09001 * 110.03454 * 95.67857 * 21 20 19 40 40 H 1.09011 * 110.02932 * 217.05638 * 21 20 19 41 41 H 1.08999 * 110.03266 * 119.28654 * 22 21 20 42 42 H 1.08995 * 110.03462 * 240.71972 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.8006 2.6577 1.1813 6 7 4.7304 2.6846 2.3131 7 6 5.5152 3.7616 2.5149 8 16 5.4259 5.0979 1.4484 9 7 6.3711 3.7862 3.5558 10 6 7.1441 4.9977 3.8400 11 6 7.9994 5.3660 2.6552 12 1 7.8966 6.3383 2.1964 13 6 8.9134 4.4618 2.1569 14 7 9.1089 3.3169 2.7738 15 14 9.8737 4.8630 0.6058 16 1 11.1341 5.5588 0.9699 17 1 10.1934 3.6061 -0.1175 18 1 9.0571 5.7431 -0.2682 19 6 6.2006 6.1672 4.2155 20 6 5.8860 5.8874 5.7061 21 6 7.2181 5.3642 6.2821 22 6 8.0180 4.7984 5.0956 23 1 -0.5400 -0.9352 -0.0004 24 1 -0.5399 0.9354 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3586 2.1316 0.0897 27 1 2.6213 1.4026 -0.9314 28 1 3.7400 0.5064 1.0920 29 1 2.4773 1.2354 2.1130 30 1 3.0958 3.4845 1.2708 31 1 4.3583 2.7549 0.2500 32 1 4.7813 1.9274 2.9171 33 1 6.4751 3.0017 4.1167 34 1 9.8023 2.7125 2.4660 35 1 5.2905 6.1370 3.6165 36 1 6.7081 7.1250 4.1011 37 1 5.1077 5.1297 5.7960 38 1 5.5863 6.8054 6.2116 39 1 7.7693 6.1804 6.7489 40 1 7.0259 4.5781 7.0125 41 1 8.9575 5.3402 4.9865 42 1 8.2141 3.7373 5.2494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247802516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:09 Heat of formation + Delta-G solvation = 18.403560 kcal Electronic energy + Delta-G solvation = -20492.552920 eV Core-core repulsion = 17598.436620 eV Total energy + Delta-G solvation = -2894.116300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.69964 -37.27640 -35.64957 -33.39364 -32.23407 -30.69508 -27.77383 -27.66102 -25.62467 -23.95969 -22.57127 -21.78563 -19.98589 -19.58040 -19.23569 -17.11891 -16.90090 -15.91267 -15.62673 -14.92533 -14.64507 -14.45665 -14.18640 -13.86607 -13.50403 -13.23813 -13.03417 -12.44687 -12.10835 -11.77895 -11.75418 -11.44488 -11.01317 -10.95684 -10.84411 -10.62203 -10.45947 -10.38275 -10.26469 -10.09465 -9.92771 -9.67146 -9.52202 -9.37391 -9.22633 -8.41404 -7.90923 -6.46897 -6.06501 -5.96374 -3.80195 2.08658 2.66856 3.20147 3.39895 3.47580 3.62692 3.74693 4.56740 4.63290 4.67613 4.84612 5.08727 5.22063 5.25637 5.40131 5.58503 5.61166 5.65005 5.67681 5.70199 5.75281 5.94836 6.17715 6.25927 6.33911 6.37262 6.43670 6.54215 6.58957 6.61343 6.73023 6.77219 6.80286 7.18267 7.20508 7.25785 7.32370 7.61344 8.00711 8.12993 8.32276 8.62856 9.08155 9.68426 11.09124 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.005124 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.940404 B = 5462.941027 C = 6407.743812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.091 4.091 4 C -0.127 4.127 5 C 0.135 3.865 6 N -0.713 5.713 7 C 0.567 3.433 8 S -0.661 6.661 9 N -0.626 5.626 10 C 0.294 3.706 11 C -0.451 4.451 12 H 0.069 0.931 13 C 0.066 3.934 14 N -0.902 5.902 15 Si 0.892 3.108 16 H -0.286 1.286 17 H -0.293 1.293 18 H -0.267 1.267 19 C -0.124 4.124 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.098 4.098 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.385 0.615 33 H 0.376 0.624 34 H 0.256 0.744 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 -6.547 2.510 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.167 4.167 3 C -0.129 4.129 4 C -0.165 4.165 5 C 0.010 3.990 6 N -0.348 5.348 7 C 0.206 3.794 8 S -0.535 6.535 9 N -0.247 5.247 10 C 0.212 3.788 11 C -0.490 4.490 12 H 0.088 0.912 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.721 3.279 16 H -0.213 1.213 17 H -0.219 1.219 18 H -0.191 1.191 19 C -0.163 4.163 20 C -0.166 4.166 21 C -0.168 4.168 22 C -0.137 4.137 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.219 0.781 33 H 0.210 0.790 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.303 -5.679 1.722 12.766 hybrid contribution 0.850 -1.644 0.209 1.863 sum -10.452 -7.323 1.931 12.908 Atomic orbital electron populations 1.23853 0.95996 1.01763 1.02003 1.22988 0.96021 0.98573 0.99154 1.20655 0.98076 0.95415 0.98716 1.21759 0.98146 0.97705 0.98921 1.21387 0.91446 0.96852 0.89315 1.44900 1.40828 1.17721 1.31304 1.21776 0.81208 0.89000 0.87461 1.92726 1.83659 1.30599 1.46518 1.46012 1.36085 1.17411 1.25231 1.19094 0.86796 0.78869 0.94004 1.21116 1.15201 1.00912 1.11806 0.91245 1.24820 0.97134 0.94769 0.96800 1.69903 1.32984 1.10176 1.41161 0.86531 0.79425 0.77640 0.84345 1.21278 1.21941 1.19147 1.22957 1.01615 0.99113 0.92624 1.22434 0.96616 0.99160 0.98373 1.22307 0.96770 0.99316 0.98433 1.22238 0.98681 1.00512 0.92291 0.88732 0.88525 0.87513 0.90968 0.90374 0.91483 0.91584 0.90516 0.90486 0.78065 0.78962 0.93495 0.89892 0.91346 0.93423 0.93175 0.92886 0.93709 0.90948 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 14.32 29.01 0.42 -1.23 16 2 C -0.15 -1.32 9.52 -36.03 -0.34 -1.66 16 3 C -0.09 -0.87 5.66 -27.88 -0.16 -1.03 16 4 C -0.13 -1.33 5.31 -26.73 -0.14 -1.47 16 5 C 0.13 1.93 5.13 -4.04 -0.02 1.91 16 6 N -0.71 -11.60 5.56 -62.03 -0.34 -11.94 16 7 C 0.57 11.88 7.42 -86.91 -0.64 11.23 16 8 S -0.66 -16.36 23.87 -107.50 -2.57 -18.93 16 9 N -0.63 -13.00 4.45 -48.83 -0.22 -13.22 16 10 C 0.29 6.57 0.31 -131.31 -0.04 6.53 16 11 C -0.45 -11.85 5.35 -34.44 -0.18 -12.04 16 12 H 0.07 1.97 7.75 -52.49 -0.41 1.57 16 13 C 0.07 1.76 5.28 -17.82 -0.09 1.67 16 14 N -0.90 -23.94 11.97 55.43 0.66 -23.28 16 15 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 19 C -0.12 -2.58 5.40 -24.74 -0.13 -2.72 16 20 C -0.13 -2.22 6.79 -25.07 -0.17 -2.39 16 21 C -0.13 -2.24 6.80 -25.61 -0.17 -2.41 16 22 C -0.10 -2.04 5.16 -25.61 -0.13 -2.17 16 23 H 0.09 0.67 8.06 -52.49 -0.42 0.25 16 24 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 25 H 0.11 0.87 8.06 -52.48 -0.42 0.45 16 26 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.17 7.99 -51.92 -0.41 0.75 16 31 H 0.08 1.27 7.99 -51.93 -0.42 0.85 16 32 H 0.38 5.20 8.49 -40.82 -0.35 4.86 16 33 H 0.38 7.18 8.29 -40.82 -0.34 6.84 16 34 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 35 H 0.08 1.87 5.80 -51.93 -0.30 1.57 16 36 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.07 1.62 7.83 -51.93 -0.41 1.22 16 42 H 0.06 1.28 7.59 -51.93 -0.39 0.88 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -29.93 346.02 -11.29 -41.22 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.20 Total: 9.30 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -1.82 Total: -5.76 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.10 Total: -48.44 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: -16.36 SS G_CDS: -2.57 Total: -18.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.93 -11.29 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247802516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.623 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds