Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99668 * 2 1 4 4 C 1.50699 * 109.47422 * 270.00422 * 3 2 1 5 5 C 1.38241 * 119.99547 * 269.72886 * 4 3 2 6 6 C 1.38237 * 119.99566 * 179.76700 * 5 4 3 7 7 C 1.38240 * 119.99859 * 0.50216 * 6 5 4 8 8 C 1.38224 * 120.00154 * 359.74975 * 7 6 5 9 9 C 1.38233 * 120.00229 * 90.00035 * 4 3 2 10 10 C 1.38995 * 120.00018 * 180.02562 * 2 1 3 11 11 C 1.39135 * 119.70959 * 4.97521 * 10 2 1 12 12 C 1.38292 * 119.09875 * 180.02562 * 11 10 2 13 13 C 1.38883 * 118.50826 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.33913 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47218 * 90.00484 * 14 13 12 16 16 H 1.08002 * 119.99619 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00079 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00113 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99947 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46944 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47234 * 119.99861 * 19 17 15 22 22 H 1.48504 * 109.46828 * 239.99713 * 19 17 15 23 23 C 1.38019 * 119.32637 * 0.03298 * 13 12 11 24 24 N 1.31974 * 120.86189 * 359.96725 * 23 13 12 25 25 H 1.09000 * 109.46764 * 269.99455 * 1 2 3 26 26 H 1.09005 * 109.47418 * 29.99911 * 1 2 3 27 27 H 1.09005 * 109.47036 * 149.99804 * 1 2 3 28 28 H 1.09000 * 109.47165 * 30.00039 * 3 2 1 29 29 H 1.09002 * 109.46977 * 150.00199 * 3 2 1 30 30 H 1.07992 * 120.00085 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.99824 * 180.23542 * 6 5 4 32 32 H 1.08000 * 119.99523 * 179.72919 * 7 6 5 33 33 H 1.08007 * 120.00127 * 179.97438 * 8 7 6 34 34 H 1.07998 * 119.99876 * 0.02562 * 9 4 3 35 35 H 1.07998 * 120.45129 * 359.97438 * 11 10 2 36 36 H 1.07997 * 120.74950 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47148 * 210.00539 * 14 13 12 38 38 H 1.09004 * 109.47290 * 330.00212 * 14 13 12 39 39 H 0.96993 * 120.00172 * 180.02562 * 18 17 15 40 40 H 1.08003 * 119.57170 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 6 3.6032 1.3095 -2.0706 6 6 3.8313 1.7047 -3.3755 7 6 2.9096 2.5028 -4.0270 8 6 1.7575 2.9014 -3.3755 9 6 1.5270 2.5020 -2.0724 10 6 2.1600 -1.2037 -0.0005 11 6 1.4622 -2.4028 -0.1059 12 6 2.1663 -3.5931 -0.1046 13 6 3.5502 -3.5445 0.0019 14 6 4.3584 -4.8164 0.0069 15 6 4.7346 -5.1781 -1.4068 16 1 4.4195 -4.5499 -2.2270 17 6 5.4801 -6.3114 -1.6534 18 7 5.8633 -7.0766 -0.6547 19 14 5.9458 -6.7601 -3.4059 20 1 5.3960 -5.7446 -4.3396 21 1 7.4250 -6.7986 -3.5306 22 1 5.3859 -8.0942 -3.7407 23 6 4.1778 -2.3194 0.1032 24 7 3.4803 -1.1990 0.0994 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 4.3255 0.6900 -1.5599 31 1 4.7315 1.3935 -3.8844 32 1 3.0899 2.8151 -5.0450 33 1 1.0376 3.5253 -3.8845 34 1 0.6272 2.8140 -1.5631 35 1 0.3852 -2.4041 -0.1867 36 1 1.6517 -4.5391 -0.1854 37 1 5.2628 -4.6699 0.5973 38 1 3.7665 -5.6213 0.4426 39 1 6.3880 -7.8737 -0.8281 40 1 5.2537 -2.2770 0.1866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = 64.740778 kcal Electronic energy + Delta-G solvation = -21010.995535 eV Core-core repulsion = 17983.444616 eV Total energy + Delta-G solvation = -3027.550919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88621 -39.01204 -36.37129 -33.47076 -32.11427 -31.75519 -30.84286 -30.22948 -27.63292 -26.98768 -24.68886 -22.78256 -22.57897 -22.49188 -21.10687 -20.09252 -17.19926 -16.73738 -16.28771 -16.09320 -15.37688 -14.97953 -14.79927 -14.55417 -14.20477 -13.99459 -13.45325 -13.35843 -13.00311 -12.83400 -12.55635 -12.32133 -12.19687 -11.98270 -11.74086 -11.45557 -11.22379 -11.18838 -10.90097 -10.70633 -10.53466 -9.85371 -9.58563 -9.11105 -8.94731 -8.88144 -8.83318 -8.61199 -8.39094 -6.94604 -6.02122 -4.06698 1.32955 1.45193 1.96016 2.23155 3.22754 3.29771 3.37639 3.42917 3.92011 4.42015 4.64380 4.80636 4.87785 4.96074 5.02162 5.10236 5.22898 5.31361 5.38486 5.44928 5.52646 5.59766 5.62945 5.72471 5.78377 5.88162 5.97300 6.04149 6.11004 6.24643 6.40299 6.46334 6.57228 6.65429 6.74887 7.04992 7.07388 7.26944 7.30536 7.55824 7.78517 7.83439 7.93022 8.34370 8.76361 8.99107 9.57477 11.06573 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.004283 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.342354 B = 6535.751369 C = 7580.377355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.617 5.617 3 C 0.172 3.828 4 C -0.101 4.101 5 C -0.091 4.091 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.129 4.129 9 C -0.113 4.113 10 C 0.371 3.629 11 C -0.237 4.237 12 C -0.043 4.043 13 C -0.133 4.133 14 C 0.059 3.941 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.131 3.869 24 N -0.540 5.540 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.021 18.347 -0.673 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.334 5.334 3 C 0.049 3.951 4 C -0.102 4.102 5 C -0.109 4.109 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.147 4.147 9 C -0.132 4.132 10 C 0.139 3.861 11 C -0.261 4.261 12 C -0.070 4.070 13 C -0.137 4.137 14 C 0.021 3.979 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.025 4.025 24 N -0.256 5.256 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.583 19.100 -0.537 21.376 hybrid contribution -0.206 -1.209 -1.260 1.758 sum -9.789 17.892 -1.796 20.473 Atomic orbital electron populations 1.21567 0.79435 1.02453 1.00758 1.46004 1.04128 1.02150 1.81075 1.20158 0.98395 0.84734 0.91851 1.20444 0.94675 0.97368 0.97759 1.21306 0.97293 0.97785 0.94537 1.21230 0.99551 0.98217 0.95183 1.21126 0.94706 0.98619 0.99676 1.21057 0.97660 1.00895 0.95103 1.21004 0.98678 0.98530 0.94973 1.18105 0.88731 0.85167 0.94048 1.21314 1.00095 0.92175 1.12518 1.21263 0.94099 0.97204 0.94395 1.21348 0.94356 0.98494 0.99529 1.18168 0.94114 0.88082 0.97515 1.21137 1.33165 1.08425 0.92133 0.92602 1.25000 0.95919 0.96282 0.97058 1.69961 1.37638 1.15099 1.30638 0.86525 0.78233 0.78330 0.84905 1.19746 1.20915 1.20982 1.22278 0.99186 0.86480 0.94532 1.67021 1.05987 1.32190 1.20398 0.93583 0.91892 0.91358 0.91013 0.88800 0.85063 0.86205 0.86506 0.86526 0.86655 0.86212 0.85586 0.95345 0.95514 0.92929 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 10.28 59.85 0.62 1.66 16 2 N -0.62 -8.50 2.97 -183.10 -0.54 -9.04 16 3 C 0.17 2.13 5.60 -5.20 -0.03 2.10 16 4 C -0.10 -1.29 5.46 -104.62 -0.57 -1.87 16 5 C -0.09 -1.28 9.70 -39.58 -0.38 -1.66 16 6 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 7 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 8 C -0.13 -1.39 10.05 -39.59 -0.40 -1.79 16 9 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 10 C 0.37 6.38 7.37 -155.02 -1.14 5.24 16 11 C -0.24 -4.05 9.27 -39.23 -0.36 -4.41 16 12 C -0.04 -0.84 9.85 -39.32 -0.39 -1.23 16 13 C -0.13 -2.89 5.09 -104.46 -0.53 -3.42 16 14 C 0.06 1.49 5.12 -29.04 -0.15 1.34 16 15 C -0.51 -14.20 9.09 -34.44 -0.31 -14.52 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.13 2.63 10.85 -17.57 -0.19 2.44 16 24 N -0.54 -10.00 8.67 -12.44 -0.11 -10.11 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.53 8.07 -51.93 -0.42 0.12 16 27 H 0.07 0.71 5.98 -51.93 -0.31 0.40 16 28 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 29 H 0.09 1.28 7.24 -51.93 -0.38 0.91 16 30 H 0.13 2.02 7.64 -52.49 -0.40 1.62 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.71 6.03 -52.49 -0.32 1.39 16 36 H 0.13 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.15 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -30.88 340.46 -10.51 -41.39 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.58 Total: 1.61 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -5.12 Total: -20.00 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.08 Total: -44.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.88 -10.51 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.133 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds