Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47197 * 2 1 4 4 H 1.08993 * 109.47397 * 182.26923 * 3 2 1 5 5 C 1.50704 * 109.47147 * 62.26752 * 3 2 1 6 6 H 1.08000 * 119.99859 * 240.00348 * 5 3 2 7 7 C 1.37872 * 119.99831 * 60.00113 * 5 3 2 8 8 N 1.31515 * 120.00325 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99777 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47251 * 60.00177 * 9 7 5 11 11 H 1.48503 * 109.46900 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47029 * 299.99974 * 9 7 5 13 13 N 1.46899 * 109.47155 * 302.27152 * 3 2 1 14 14 C 1.46904 * 110.99684 * 279.97713 * 13 3 2 15 15 C 1.50708 * 109.46994 * 175.10976 * 14 13 3 16 16 N 1.30091 * 126.19392 * 90.02203 * 15 14 13 17 17 O 1.21301 * 110.38639 * 179.97438 * 16 15 14 18 18 C 1.34159 * 109.66530 * 0.02562 * 17 16 15 19 19 C 1.48251 * 126.63906 * 180.02562 * 18 17 16 20 20 O 1.21498 * 120.00027 * 187.90705 * 19 18 17 21 21 N 1.34779 * 120.00326 * 7.90117 * 19 18 17 22 22 C 1.46499 * 120.00172 * 186.49964 * 21 19 18 23 23 C 1.46497 * 119.99512 * 6.50235 * 21 19 18 24 24 N 1.31789 * 106.72202 * 359.75134 * 18 17 16 25 25 H 1.09008 * 109.46891 * 175.80454 * 1 2 3 26 26 H 1.08997 * 109.46975 * 55.80325 * 1 2 3 27 27 H 1.08999 * 109.47458 * 295.79786 * 1 2 3 28 28 H 1.09002 * 109.46982 * 119.99598 * 2 1 3 29 29 H 1.08998 * 109.47086 * 239.99501 * 2 1 3 30 30 H 0.97001 * 119.99942 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00086 * 43.92643 * 13 3 2 32 32 H 1.08999 * 109.46992 * 295.10641 * 14 13 3 33 33 H 1.08997 * 109.47265 * 55.10423 * 14 13 3 34 34 H 1.09003 * 109.46901 * 90.00166 * 22 21 19 35 35 H 1.08999 * 109.46716 * 209.99704 * 22 21 19 36 36 H 1.08997 * 109.46949 * 330.00188 * 22 21 19 37 37 H 1.09002 * 109.47485 * 5.79434 * 23 21 19 38 38 H 1.09005 * 109.47549 * 125.79966 * 23 21 19 39 39 H 1.09004 * 109.47442 * 245.79938 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1292 1.4427 -0.0407 5 6 1.5841 2.1365 1.2576 6 1 0.9601 3.0156 1.1933 7 6 1.9636 1.6490 2.4902 8 7 2.7238 0.5787 2.5685 9 14 1.3979 2.5089 4.0491 10 1 -0.0861 2.5079 4.1043 11 1 1.9382 1.7934 5.2330 12 1 1.8923 3.9091 4.0493 13 7 1.5061 2.1506 -1.1710 14 6 2.2769 1.8265 -2.3788 15 6 1.6300 2.4736 -3.5764 16 7 1.8887 3.6606 -4.0416 17 8 1.2028 3.8917 -5.0150 18 6 0.4136 2.8376 -5.2717 19 6 -0.5708 2.7170 -6.3737 20 8 -1.3261 1.7661 -6.4122 21 7 -0.6279 3.6621 -7.3328 22 6 -1.6906 3.6201 -8.3404 23 6 0.3729 4.7315 -7.3678 24 7 0.6869 1.9278 -4.3583 25 1 -0.3633 -1.0250 -0.0752 26 1 -0.3633 0.5776 -0.8500 27 1 -0.3634 0.4472 0.9252 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 2.9910 0.2360 3.4357 31 1 0.5266 1.9463 -1.3016 32 1 3.2955 2.1992 -2.2706 33 1 2.2983 0.7456 -2.5171 34 1 -2.5507 4.1877 -7.9851 35 1 -1.3266 4.0562 -9.2707 36 1 -1.9851 2.5853 -8.5148 37 1 1.1345 4.5413 -6.6116 38 1 0.8385 4.7614 -8.3530 39 1 -0.1097 5.6876 -7.1649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = 60.804370 kcal Electronic energy + Delta-G solvation = -22122.591603 eV Core-core repulsion = 18684.020725 eV Total energy + Delta-G solvation = -3438.570878 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.75349 -40.19931 -37.21016 -36.33375 -35.52455 -33.22720 -32.17694 -30.54806 -28.74818 -27.28691 -27.27797 -25.26346 -24.39012 -23.30833 -22.69971 -20.51623 -19.32644 -18.43460 -17.98512 -17.10916 -16.80509 -16.28723 -16.14071 -14.97168 -14.87046 -14.43379 -14.00426 -13.77101 -13.35629 -13.03277 -13.00582 -12.95483 -12.68218 -12.46979 -12.33078 -12.10343 -11.87174 -11.57126 -11.25996 -10.91136 -10.79807 -10.75764 -10.56383 -10.23611 -10.02226 -9.84244 -9.62383 -9.31289 -9.02717 -8.36273 -7.40965 -6.00232 -4.03236 0.45079 1.88323 1.93114 2.58181 2.74114 3.34224 3.38214 3.41683 3.55328 3.98231 4.39827 4.44632 4.76852 4.82968 4.90119 5.12429 5.31375 5.32533 5.35441 5.37505 5.46046 5.69333 5.82904 5.96174 6.01325 6.31140 6.35132 6.52305 6.54114 6.88790 7.13150 7.22481 7.35815 7.41483 7.67625 7.81960 8.03195 8.19966 8.38524 8.51924 9.01509 9.60894 11.06474 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.003375 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.749150 B = 8295.384031 C = 8500.511499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.218 3.782 4 H 0.039 0.961 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.142 3.858 15 C 0.189 3.811 16 N -0.353 5.353 17 O 0.094 5.906 18 C 0.121 3.879 19 C 0.619 3.381 20 O -0.482 6.482 21 N -0.605 5.605 22 C 0.086 3.914 23 C 0.059 3.941 24 N -0.408 5.408 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.014 0.986 30 H 0.261 0.739 31 H 0.334 0.666 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 6.674 -21.262 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.191 4.191 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.312 5.312 14 C 0.011 3.989 15 C -0.084 4.084 16 N -0.058 5.058 17 O 0.031 5.969 18 C -0.102 4.102 19 C 0.401 3.599 20 O -0.352 6.352 21 N -0.340 5.340 22 C -0.055 4.055 23 C -0.084 4.084 24 N -0.144 5.144 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.914 6.742 -20.454 21.889 hybrid contribution -0.605 -0.341 0.578 0.904 sum -4.519 6.400 -19.876 21.364 Atomic orbital electron populations 1.21602 0.97847 0.98453 1.01085 1.22161 0.94706 1.01148 1.01054 1.19237 0.95271 0.88211 0.86216 0.94340 1.20976 1.31213 1.11629 0.89329 0.92040 1.24895 0.95289 0.95098 0.98944 1.69849 1.36329 1.22617 1.24688 0.86578 0.78936 0.79648 0.82351 1.20341 1.21433 1.20292 1.61075 1.06429 1.62323 1.01353 1.20353 0.97443 0.97032 0.84027 1.26266 0.94331 0.88155 0.99627 1.74690 1.13931 1.17917 0.99214 1.85539 1.38166 1.38922 1.34298 1.28158 0.97790 0.84740 0.99529 1.16184 0.81167 0.83086 0.79508 1.90899 1.39888 1.30419 1.74024 1.47498 1.30591 1.27197 1.28743 1.21802 0.89240 1.04323 0.90160 1.22367 0.91779 0.90178 1.04083 1.71985 1.12033 1.27524 1.02894 0.95329 0.95022 0.91909 0.88150 0.96694 0.92921 0.84652 0.88555 0.92177 0.91706 0.90224 0.89753 0.88855 0.90575 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.39 37.16 0.35 -2.51 16 2 C -0.15 -3.55 5.51 -26.73 -0.15 -3.69 16 3 C 0.22 5.36 2.32 -68.87 -0.16 5.20 16 4 H 0.04 1.03 7.93 -51.93 -0.41 0.61 16 5 C -0.49 -13.36 7.76 -34.44 -0.27 -13.62 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 8 N -0.90 -25.09 11.31 55.43 0.63 -24.46 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.73 6.24 -109.22 -0.68 -15.41 16 14 C 0.14 2.65 6.13 -4.97 -0.03 2.62 16 15 C 0.19 3.32 7.66 -156.59 -1.20 2.12 16 16 N -0.35 -5.76 12.16 31.12 0.38 -5.38 16 17 O 0.09 1.26 7.99 16.76 0.13 1.39 16 18 C 0.12 1.74 7.84 -13.82 -0.11 1.63 16 19 C 0.62 7.80 7.68 -12.14 -0.09 7.71 16 20 O -0.48 -7.55 16.65 5.37 0.09 -7.46 16 21 N -0.61 -5.03 3.27 -190.49 -0.62 -5.66 16 22 C 0.09 0.48 10.53 59.85 0.63 1.11 16 23 C 0.06 0.33 10.40 59.85 0.62 0.95 16 24 N -0.41 -7.06 11.56 -10.17 -0.12 -7.18 16 25 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.03 0.64 6.08 -51.93 -0.32 0.33 16 27 H 0.06 1.45 7.44 -51.93 -0.39 1.07 16 28 H 0.10 2.63 6.01 -51.93 -0.31 2.32 16 29 H 0.01 0.32 7.14 -51.93 -0.37 -0.05 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.33 7.24 6.12 -39.29 -0.24 6.99 16 32 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.06 1.10 7.04 -51.93 -0.37 0.74 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.08 0.57 7.34 -51.93 -0.38 0.19 16 37 H 0.09 0.68 4.11 -53.32 -0.22 0.46 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -31.30 324.69 -5.90 -37.20 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.08 Total: 2.70 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.50 Total: 3.01 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.42 Total: -58.08 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: 0.22 Total: -6.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.30 -5.90 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.003 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds