Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47504 * 2 1 4 4 H 1.08999 * 109.47101 * 181.96279 * 3 2 1 5 5 C 1.50693 * 109.46767 * 301.96345 * 3 2 1 6 6 H 1.08004 * 119.99853 * 120.00074 * 5 3 2 7 7 C 1.37876 * 120.00264 * 299.99827 * 5 3 2 8 8 N 1.31516 * 120.00188 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99852 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47018 * 90.00075 * 9 7 5 11 11 H 1.48503 * 109.47125 * 209.99845 * 9 7 5 12 12 H 1.48501 * 109.47217 * 330.00286 * 9 7 5 13 13 N 1.46902 * 109.47024 * 61.96440 * 3 2 1 14 14 C 1.46902 * 110.99971 * 88.58972 * 13 3 2 15 15 C 1.50698 * 109.46762 * 174.94383 * 14 13 3 16 16 N 1.30093 * 126.19797 * 90.02557 * 15 14 13 17 17 O 1.21297 * 110.38714 * 180.02562 * 16 15 14 18 18 C 1.34154 * 109.67201 * 359.97438 * 17 16 15 19 19 C 1.48247 * 126.64394 * 180.02562 * 18 17 16 20 20 O 1.21496 * 120.00392 * 172.27326 * 19 18 17 21 21 N 1.34778 * 120.00118 * 352.26646 * 19 18 17 22 22 C 1.46503 * 120.00211 * 185.24296 * 21 19 18 23 23 C 1.46498 * 119.99701 * 5.24726 * 21 19 18 24 24 N 1.31791 * 106.71739 * 0.02562 * 18 17 16 25 25 H 1.08999 * 109.47639 * 184.57543 * 1 2 3 26 26 H 1.09005 * 109.47108 * 304.57943 * 1 2 3 27 27 H 1.08998 * 109.46587 * 64.57254 * 1 2 3 28 28 H 1.09002 * 109.47250 * 239.99129 * 2 1 3 29 29 H 1.09003 * 109.46632 * 120.00129 * 2 1 3 30 30 H 0.97001 * 119.99716 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99769 * 324.63446 * 13 3 2 32 32 H 1.08998 * 109.46686 * 54.94336 * 14 13 3 33 33 H 1.08999 * 109.47251 * 294.94225 * 14 13 3 34 34 H 1.08995 * 109.46636 * 90.00683 * 22 21 19 35 35 H 1.08996 * 109.47133 * 210.00273 * 22 21 19 36 36 H 1.09001 * 109.46868 * 330.00349 * 22 21 19 37 37 H 1.09003 * 109.46964 * 84.05033 * 23 21 19 38 38 H 1.09001 * 109.47442 * 204.04560 * 23 21 19 39 39 H 1.09000 * 109.47568 * 324.05205 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1295 1.4426 -0.0352 5 6 1.4984 2.1667 -1.2054 6 1 0.8812 3.0436 -1.0762 7 6 1.7908 1.7101 -2.4730 8 7 1.3185 2.3425 -3.5250 9 14 2.8578 0.1931 -2.6963 10 1 1.9974 -1.0169 -2.7280 11 1 3.6090 0.2998 -3.9729 12 1 3.8150 0.0903 -1.5657 13 7 1.5896 2.1212 1.2225 14 6 2.5535 1.9327 2.3149 15 6 2.1221 2.7421 3.5106 16 7 1.3444 2.3379 4.4720 17 8 1.1854 3.2221 5.2870 18 6 1.8708 4.3121 4.9102 19 6 1.9405 5.6061 5.6302 20 8 2.7093 6.4692 5.2556 21 7 1.1510 5.8254 6.7003 22 6 1.1356 7.1424 7.3417 23 6 0.3083 4.7466 7.2220 24 7 2.4703 4.0098 3.7761 25 1 -0.3634 -1.0243 0.0820 26 1 -0.3633 0.5833 0.8462 27 1 -0.3632 0.4413 -0.9281 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5245 2.0213 -4.4168 31 1 0.6701 1.8060 1.4931 32 1 3.5402 2.2624 1.9897 33 1 2.5939 0.8777 2.5858 34 1 0.3692 7.7634 6.8780 35 1 0.9164 7.0270 8.4032 36 1 2.1096 7.6166 7.2213 37 1 0.8944 4.1209 7.8952 38 1 -0.5346 5.1741 7.7650 39 1 -0.0619 4.1419 6.3941 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = 64.676258 kcal Electronic energy + Delta-G solvation = -22122.525520 eV Core-core repulsion = 18684.122540 eV Total energy + Delta-G solvation = -3438.402980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.75420 -40.17679 -37.37596 -36.39257 -35.60816 -33.29406 -32.16850 -31.11769 -28.76356 -27.54148 -27.27680 -25.59297 -24.41046 -23.23742 -22.76619 -20.43854 -19.68690 -18.41339 -18.06869 -17.07628 -16.79743 -16.47983 -16.08095 -15.27698 -15.19462 -14.53451 -13.93748 -13.72897 -13.47917 -13.31214 -13.13830 -12.99676 -12.92278 -12.66639 -12.48454 -12.41285 -12.07065 -11.68792 -11.24275 -11.11170 -10.84182 -10.75912 -10.63887 -10.54118 -10.21201 -9.94029 -9.41215 -9.28591 -9.21414 -8.55331 -7.62587 -6.04772 -4.01654 0.45091 1.89536 1.90094 2.62024 2.72686 3.24597 3.33571 3.37527 3.57139 3.91312 4.39238 4.47193 4.65291 4.81316 4.92572 5.04727 5.15187 5.24209 5.33000 5.36768 5.42099 5.53529 5.74533 5.82055 5.86049 5.87821 5.98852 6.10093 6.46703 6.55597 6.66944 6.72221 6.89634 7.16048 7.37981 7.61262 7.77509 7.97713 8.11490 8.65414 9.07158 9.56645 11.08547 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031625 B = 0.003521 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.163264 B = 7950.550859 C = 8306.770571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.160 4.160 3 C 0.189 3.811 4 H 0.038 0.962 5 C -0.492 4.492 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.269 1.269 13 N -0.664 5.664 14 C 0.141 3.859 15 C 0.194 3.806 16 N -0.371 5.371 17 O 0.094 5.906 18 C 0.124 3.876 19 C 0.619 3.381 20 O -0.480 6.480 21 N -0.606 5.606 22 C 0.086 3.914 23 C 0.065 3.935 24 N -0.393 5.393 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.263 0.737 31 H 0.336 0.664 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 2.394 23.920 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 C 0.080 3.920 4 H 0.056 0.944 5 C -0.530 4.530 6 H 0.101 0.899 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.223 1.223 12 H -0.194 1.194 13 N -0.297 5.297 14 C 0.010 3.990 15 C -0.079 4.079 16 N -0.076 5.076 17 O 0.030 5.970 18 C -0.100 4.100 19 C 0.400 3.600 20 O -0.350 6.350 21 N -0.341 5.341 22 C -0.056 4.056 23 C -0.078 4.078 24 N -0.129 5.129 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.552 2.789 22.995 23.215 hybrid contribution 0.229 -1.841 0.099 1.858 sum -1.324 0.948 23.093 23.151 Atomic orbital electron populations 1.21600 0.95721 0.98965 1.02942 1.22524 0.97338 1.00767 0.99255 1.19738 0.95910 0.88100 0.88236 0.94421 1.20847 1.31810 1.12863 0.87507 0.89929 1.24887 0.95630 0.96699 0.95927 1.69876 1.45395 1.40298 0.98131 0.86975 0.81077 0.83829 0.77035 1.20605 1.22333 1.19442 1.60655 1.03777 1.62796 1.02498 1.20340 0.98854 0.94303 0.85502 1.26155 0.94568 0.89420 0.97755 1.74645 1.18584 1.11709 1.02659 1.85545 1.53386 1.17512 1.40562 1.28237 0.94962 0.92670 0.94125 1.16104 0.81549 0.82152 0.80155 1.90907 1.36913 1.42172 1.65010 1.47515 1.42848 1.14316 1.29415 1.21824 1.04113 0.82186 0.97433 1.22191 0.95011 0.89753 1.00818 1.72015 1.19624 1.11678 1.09563 0.94881 0.93830 0.90559 0.92825 0.94793 0.92649 0.84451 0.87742 0.92828 0.91681 0.90225 0.89742 0.91322 0.89522 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.41 37.16 0.35 -2.29 16 2 C -0.16 -3.33 5.28 -26.73 -0.14 -3.47 16 3 C 0.19 4.34 1.93 -68.87 -0.13 4.21 16 4 H 0.04 0.89 6.72 -51.93 -0.35 0.54 16 5 C -0.49 -13.61 8.15 -34.44 -0.28 -13.89 16 6 H 0.08 2.56 8.06 -52.48 -0.42 2.13 16 7 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.52 16 9 Si 0.88 21.56 24.35 -169.99 -4.14 17.42 16 10 H -0.28 -6.65 6.89 56.52 0.39 -6.26 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.66 -13.68 6.21 -109.22 -0.68 -14.36 16 14 C 0.14 2.46 6.16 -4.98 -0.03 2.43 16 15 C 0.19 3.29 7.75 -156.59 -1.21 2.08 16 16 N -0.37 -5.64 12.16 31.12 0.38 -5.26 16 17 O 0.09 1.20 8.08 16.77 0.14 1.34 16 18 C 0.12 1.77 7.85 -13.82 -0.11 1.66 16 19 C 0.62 7.88 7.69 -12.14 -0.09 7.79 16 20 O -0.48 -7.65 16.65 5.37 0.09 -7.56 16 21 N -0.61 -5.05 3.27 -190.50 -0.62 -5.67 16 22 C 0.09 0.48 10.45 59.85 0.63 1.11 16 23 C 0.06 0.35 9.73 59.85 0.58 0.93 16 24 N -0.39 -6.93 11.56 -10.18 -0.12 -7.05 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.79 6.13 -51.93 -0.32 0.47 16 27 H 0.08 1.70 7.33 -51.93 -0.38 1.31 16 28 H 0.05 1.19 3.32 -51.93 -0.17 1.02 16 29 H 0.03 0.62 7.78 -51.93 -0.40 0.21 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.34 6.61 6.31 -39.29 -0.25 6.36 16 32 H 0.10 1.81 7.93 -51.93 -0.41 1.40 16 33 H 0.05 0.84 7.78 -51.93 -0.40 0.44 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.08 0.58 7.36 -51.93 -0.38 0.19 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.24 8.03 -51.93 -0.42 -0.17 16 39 H 0.08 0.57 5.35 -51.93 -0.28 0.29 16 LS Contribution 319.51 15.07 4.82 4.82 Total: -1.00 -33.42 319.51 -4.96 -38.38 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.05 Total: 2.02 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.54 Total: 2.45 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.27 Total: -58.86 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: 0.22 Total: -6.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.42 -4.96 -38.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.059 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds