Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47578 * 2 1 4 4 H 1.08999 * 109.46663 * 305.65361 * 3 2 1 5 5 C 1.50698 * 109.47231 * 185.65358 * 3 2 1 6 6 H 1.08005 * 119.99919 * 245.40909 * 5 3 2 7 7 C 1.37871 * 119.99994 * 65.41692 * 5 3 2 8 8 N 1.31516 * 120.00516 * 355.26980 * 7 5 3 9 9 Si 1.86808 * 119.99891 * 175.27869 * 7 5 3 10 10 H 1.48500 * 109.47239 * 94.99496 * 9 7 5 11 11 H 1.48504 * 109.46739 * 214.99085 * 9 7 5 12 12 H 1.48494 * 109.46856 * 334.99264 * 9 7 5 13 13 N 1.46496 * 109.47135 * 65.65069 * 3 2 1 14 14 C 1.37880 * 120.00046 * 275.00531 * 13 3 2 15 15 N 1.30376 * 120.00210 * 359.97438 * 14 13 3 16 16 C 1.47780 * 119.99961 * 180.02562 * 14 13 3 17 17 C 1.38539 * 120.35828 * 354.12409 * 16 14 13 18 18 C 1.38979 * 120.65733 * 179.65190 * 17 16 14 19 19 C 1.36244 * 121.16318 * 0.66415 * 18 17 16 20 20 C 1.40542 * 120.09468 * 359.66661 * 19 18 17 21 21 C 1.40579 * 121.18013 * 180.02562 * 20 19 18 22 22 C 1.36119 * 119.65828 * 179.97438 * 21 20 19 23 23 C 1.39312 * 120.96068 * 0.03141 * 22 21 20 24 24 C 1.36225 * 120.93406 * 359.92913 * 23 22 21 25 25 C 1.40198 * 119.68604 * 0.08531 * 24 23 22 26 26 H 1.09003 * 109.47013 * 300.00200 * 1 2 3 27 27 H 1.08996 * 109.47253 * 59.99820 * 1 2 3 28 28 H 1.09000 * 109.47480 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47013 * 239.99800 * 2 1 3 30 30 H 1.09006 * 109.46748 * 120.00047 * 2 1 3 31 31 H 0.96998 * 120.00505 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99869 * 95.00629 * 13 3 2 33 33 H 0.96999 * 119.99569 * 359.97438 * 15 14 13 34 34 H 1.07999 * 119.67109 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.41526 * 180.31026 * 18 17 16 36 36 H 1.07996 * 119.95047 * 179.65020 * 19 18 17 37 37 H 1.08004 * 120.17477 * 359.93415 * 21 20 19 38 38 H 1.08006 * 119.52362 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.53490 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.15963 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5964 1.9846 -0.8350 5 6 3.5405 1.4446 -0.1400 6 1 4.1578 1.8065 0.6690 7 6 4.1252 0.9849 -1.3008 8 7 3.3806 0.4584 -2.2485 9 14 5.9753 1.1094 -1.5275 10 1 6.6112 -0.1693 -1.1201 11 1 6.2818 1.3819 -2.9548 12 1 6.5035 2.2145 -0.6880 13 7 1.6660 2.0927 1.2583 14 6 0.4220 2.6722 1.3917 15 7 -0.4212 2.6419 0.3978 16 6 0.0449 3.3286 2.6608 17 6 0.8849 3.2615 3.7605 18 6 0.5398 3.8826 4.9549 19 6 -0.6348 4.5609 5.0831 20 6 -1.5203 4.6487 3.9952 21 6 -2.7379 5.3431 4.1021 22 6 -3.5722 5.4090 3.0285 23 6 -3.2379 4.7971 1.8225 24 6 -2.0659 4.1167 1.6836 25 6 -1.1821 4.0276 2.7683 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.7921 0.1346 -3.0650 32 1 2.2935 2.1155 1.9977 33 1 -0.1733 2.2120 -0.4356 34 1 1.8197 2.7255 3.6872 35 1 1.2120 3.8217 5.7980 36 1 -0.8860 5.0315 6.0221 37 1 -3.0104 5.8213 5.0314 38 1 -4.5069 5.9435 3.1129 39 1 -3.9172 4.8636 0.9855 40 1 -1.8191 3.6473 0.7427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = 73.954931 kcal Electronic energy + Delta-G solvation = -21551.746826 eV Core-core repulsion = 18524.595463 eV Total energy + Delta-G solvation = -3027.151363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23692 -37.85055 -36.13120 -34.10307 -32.24348 -31.02686 -30.86065 -29.86488 -28.93336 -26.65212 -23.90090 -23.14504 -22.53686 -22.27774 -20.26144 -18.90077 -17.52961 -17.17290 -16.56712 -16.07331 -15.54148 -15.14165 -14.52465 -14.16163 -13.97765 -13.69084 -13.31856 -13.22871 -12.81746 -12.68433 -12.44540 -11.83406 -11.74301 -11.47874 -11.33548 -11.02716 -10.99141 -10.97932 -10.75159 -10.70036 -10.31824 -10.24147 -9.77891 -9.39950 -9.15803 -8.58990 -8.44255 -8.38479 -7.59244 -7.18673 -6.22740 -4.30652 0.56920 1.21165 2.13632 3.03321 3.19169 3.27091 3.29807 3.70229 4.11159 4.33616 4.45813 4.82524 4.91821 4.99646 5.10077 5.14225 5.26300 5.31285 5.58878 5.60576 5.67802 5.92393 6.16517 6.17219 6.24225 6.28664 6.34504 6.43421 6.44161 6.57465 6.70782 6.79804 6.84453 6.92707 7.04996 7.13522 7.16924 7.35061 7.46757 7.56756 7.66663 8.01577 8.06276 8.59590 8.83183 9.14750 9.37470 10.83600 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.004328 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.898840 B = 6468.329484 C = 7052.416810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.270 3.730 4 H 0.039 0.961 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.737 5.737 14 C 0.447 3.553 15 N -0.778 5.778 16 C -0.022 4.022 17 C -0.103 4.103 18 C -0.117 4.117 19 C -0.104 4.104 20 C -0.055 4.055 21 C -0.128 4.128 22 C -0.112 4.112 23 C -0.143 4.143 24 C -0.098 4.098 25 C -0.026 4.026 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.384 0.616 33 H 0.343 0.657 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.568 6.483 11.650 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C 0.168 3.832 4 H 0.057 0.943 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.375 5.375 14 C 0.169 3.831 15 N -0.420 5.420 16 C -0.024 4.024 17 C -0.124 4.124 18 C -0.135 4.135 19 C -0.123 4.123 20 C -0.055 4.055 21 C -0.146 4.146 22 C -0.130 4.130 23 C -0.161 4.161 24 C -0.116 4.116 25 C -0.027 4.027 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.475 6.670 11.124 16.063 hybrid contribution 2.055 -0.463 -0.128 2.110 sum -7.421 6.207 10.996 14.646 Atomic orbital electron populations 1.22167 0.98723 0.99535 1.00869 1.22031 0.92284 1.00218 1.02358 1.18711 0.95095 0.88708 0.80717 0.94295 1.21143 0.90493 1.43593 1.01710 0.92039 1.24884 0.98677 0.94478 0.95582 1.69892 1.35474 1.39270 1.07396 0.86438 0.84696 0.78437 0.77610 1.20595 1.20977 1.19772 1.46322 1.13639 1.59277 1.18220 1.20320 0.83150 0.87988 0.91687 1.69276 1.33685 1.33148 1.05905 1.18612 0.94279 0.97957 0.91552 1.21212 0.99349 0.99342 0.92454 1.20668 0.97126 0.98225 0.97440 1.21040 0.94181 0.99341 0.97750 1.18090 0.95287 0.98654 0.93480 1.20849 0.94038 1.00818 0.98936 1.20891 0.99157 0.99276 0.93652 1.21040 0.98211 0.99573 0.97321 1.23209 0.91565 0.94589 1.02220 1.17965 0.94043 0.97115 0.93595 0.93106 0.93420 0.95037 0.88691 0.94520 0.92502 0.78257 0.83561 0.85533 0.85810 0.85886 0.86207 0.86758 0.86480 0.78643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.36 37.15 0.31 -2.84 16 2 C -0.13 -2.95 5.49 -26.74 -0.15 -3.10 16 3 C 0.27 6.36 2.14 -69.09 -0.15 6.21 16 4 H 0.04 1.03 6.69 -51.93 -0.35 0.68 16 5 C -0.53 -13.58 8.67 -34.44 -0.30 -13.88 16 6 H 0.06 1.54 7.72 -52.48 -0.41 1.13 16 7 C 0.07 1.75 5.35 -17.82 -0.10 1.65 16 8 N -0.88 -23.80 11.52 55.43 0.64 -23.16 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.74 -14.79 5.08 -53.24 -0.27 -15.06 16 14 C 0.45 8.55 6.38 -154.24 -0.98 7.56 16 15 N -0.78 -15.29 8.44 32.50 0.27 -15.02 16 16 C -0.02 -0.37 5.90 -104.60 -0.62 -0.99 16 17 C -0.10 -1.47 9.52 -39.20 -0.37 -1.84 16 18 C -0.12 -1.40 9.93 -40.02 -0.40 -1.80 16 19 C -0.10 -1.26 9.75 -39.43 -0.38 -1.64 16 20 C -0.06 -0.78 5.74 -106.86 -0.61 -1.40 16 21 C -0.13 -1.58 9.77 -39.46 -0.39 -1.97 16 22 C -0.11 -1.37 9.95 -39.94 -0.40 -1.76 16 23 C -0.14 -1.98 9.95 -39.91 -0.40 -2.38 16 24 C -0.10 -1.61 9.19 -39.57 -0.36 -1.97 16 25 C -0.03 -0.43 5.76 -106.58 -0.61 -1.04 16 26 H 0.05 1.03 5.58 -51.93 -0.29 0.74 16 27 H 0.05 0.97 6.76 -51.93 -0.35 0.62 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 2.41 6.22 -51.93 -0.32 2.09 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.38 7.06 6.67 -40.82 -0.27 6.79 16 33 H 0.34 7.17 4.26 -40.82 -0.17 7.00 16 34 H 0.13 1.64 6.43 -52.49 -0.34 1.31 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.11 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.20 3.48 4.55 -58.09 -0.26 3.21 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -27.25 317.49 -10.36 -37.61 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.82 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -5.90 Total: -21.19 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.64 Total: -53.24 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.25 -10.36 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.566 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds