Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46972 * 2 1 4 4 H 1.08999 * 109.47734 * 55.00217 * 3 2 1 5 5 C 1.50701 * 109.47130 * 174.99876 * 3 2 1 6 6 H 1.08007 * 119.99469 * 119.99797 * 5 3 2 7 7 C 1.37869 * 120.00519 * 300.00319 * 5 3 2 8 8 N 1.31510 * 120.00480 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99663 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46855 * 90.00354 * 9 7 5 11 11 H 1.48496 * 109.47455 * 210.00064 * 9 7 5 12 12 H 1.48498 * 109.47420 * 330.00540 * 9 7 5 13 13 N 1.46503 * 109.47280 * 294.99822 * 3 2 1 14 14 C 1.37879 * 119.99614 * 84.99902 * 13 3 2 15 15 N 1.30381 * 120.00125 * 0.02562 * 14 13 3 16 16 C 1.47778 * 119.99850 * 179.97438 * 14 13 3 17 17 C 1.38532 * 120.36154 * 235.94816 * 16 14 13 18 18 C 1.38981 * 120.66237 * 179.70261 * 17 16 14 19 19 C 1.36246 * 121.15760 * 0.63540 * 18 17 16 20 20 C 1.40546 * 120.09883 * 359.65098 * 19 18 17 21 21 C 1.40580 * 121.17922 * 180.02562 * 20 19 18 22 22 C 1.36125 * 119.65131 * 179.97438 * 21 20 19 23 23 C 1.39313 * 120.96033 * 0.02562 * 22 21 20 24 24 C 1.36219 * 120.93700 * 359.93287 * 23 22 21 25 25 C 1.40189 * 119.68638 * 0.08782 * 24 23 22 26 26 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47255 * 59.99883 * 1 2 3 28 28 H 1.09005 * 109.46865 * 300.00134 * 1 2 3 29 29 H 1.08998 * 109.47255 * 120.00117 * 2 1 3 30 30 H 1.08995 * 109.47365 * 240.00130 * 2 1 3 31 31 H 0.97007 * 120.00316 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00394 * 265.00448 * 13 3 2 33 33 H 0.97003 * 119.99509 * 185.11111 * 15 14 13 34 34 H 1.07999 * 119.67013 * 0.03254 * 17 16 14 35 35 H 1.08001 * 119.42004 * 180.28519 * 18 17 16 36 36 H 1.08001 * 119.95157 * 179.67863 * 19 18 17 37 37 H 1.07993 * 120.17466 * 359.95582 * 21 20 19 38 38 H 1.08004 * 119.51672 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.52680 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.15532 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1100 2.5706 10 1 2.8746 -1.3260 2.2645 11 1 3.7941 0.2359 3.8754 12 1 1.7881 0.8092 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4071 2.6774 -1.3696 15 7 -0.4254 2.6433 -0.3667 16 6 0.0163 3.3386 -2.6321 17 6 -0.3975 4.6607 -2.6312 18 6 -0.7605 5.2905 -3.8157 19 6 -0.7325 4.6259 -5.0048 20 6 -0.3248 3.2817 -5.0515 21 6 -0.2869 2.5745 -6.2659 22 6 0.1136 1.2735 -6.2752 23 6 0.4870 0.6300 -5.0974 24 6 0.4629 1.2854 -3.9034 25 6 0.0555 2.6259 -3.8553 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 5.8771 0.4827 2.1132 32 1 2.2719 2.1232 -1.9979 33 1 -1.3271 2.9849 -0.4731 34 1 -0.4333 5.2090 -1.7015 35 1 -1.0757 6.3233 -3.7925 36 1 -1.0237 5.1329 -5.9129 37 1 -0.5742 3.0606 -7.1864 38 1 0.1416 0.7321 -7.2094 39 1 0.8005 -0.4029 -5.1315 40 1 0.7553 0.7744 -2.9980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = 55.182664 kcal Electronic energy + Delta-G solvation = -21832.902104 eV Core-core repulsion = 18804.936714 eV Total energy + Delta-G solvation = -3027.965390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44591 -39.12924 -37.41454 -35.75898 -34.03551 -32.90086 -32.33490 -31.23020 -29.85726 -29.08162 -25.05580 -24.41034 -23.79244 -23.53760 -21.89683 -21.06961 -19.11639 -18.39666 -18.07447 -17.41256 -17.12734 -16.42281 -16.22828 -15.53611 -15.27723 -15.06961 -14.76554 -14.66889 -14.54738 -14.35450 -13.83194 -13.71228 -13.48468 -13.04010 -12.95255 -12.68574 -12.45720 -12.29879 -12.16537 -11.95121 -11.81478 -11.65489 -11.25496 -11.09015 -10.90644 -10.73901 -10.00922 -9.57792 -8.83630 -8.76003 -8.34729 -6.39009 -0.53800 0.07095 0.94712 1.29209 1.36694 1.48530 1.80988 2.09783 2.29397 2.62913 3.01928 3.17874 3.60359 3.83908 3.94008 4.01661 4.14342 4.30153 4.34040 4.43240 4.44703 4.47182 4.53922 4.61488 4.75872 4.87063 4.99232 5.03384 5.13912 5.18370 5.22132 5.28301 5.32671 5.38094 5.45799 5.57150 5.61473 5.65278 5.68658 5.87771 6.08079 6.08997 6.50715 6.68250 6.88825 7.26518 7.79393 8.81138 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.005016 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.782222 B = 5580.734098 C = 5919.491272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 C 0.268 3.732 4 H 0.031 0.969 5 C -0.533 4.533 6 H 0.045 0.955 7 C 0.027 3.973 8 N -0.940 5.940 9 Si 0.942 3.058 10 H -0.264 1.264 11 H -0.296 1.296 12 H -0.255 1.255 13 N -0.692 5.692 14 C 0.458 3.542 15 N -0.789 5.789 16 C -0.118 4.118 17 C -0.088 4.088 18 C -0.122 4.122 19 C -0.086 4.086 20 C -0.073 4.073 21 C -0.103 4.103 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.136 4.136 25 C -0.045 4.045 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.268 0.732 32 H 0.399 0.601 33 H 0.340 0.660 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.407 4.657 -16.883 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.173 4.173 3 C 0.162 3.838 4 H 0.049 0.951 5 C -0.571 4.571 6 H 0.063 0.937 7 C -0.172 4.172 8 N -0.579 5.579 9 Si 0.769 3.231 10 H -0.190 1.190 11 H -0.224 1.224 12 H -0.179 1.179 13 N -0.328 5.328 14 C 0.177 3.823 15 N -0.423 5.423 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.140 4.140 19 C -0.104 4.104 20 C -0.073 4.073 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.046 4.046 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.172 4.209 -15.628 22.184 hybrid contribution 0.114 -0.062 0.218 0.254 sum -15.058 4.147 -15.410 21.941 Atomic orbital electron populations 1.21746 0.94783 0.99435 1.02280 1.22189 0.96294 0.98770 1.00020 1.18626 0.91936 0.89270 0.83922 0.95139 1.21412 0.91167 1.38007 1.06508 0.93654 1.25568 0.95730 0.95943 0.99946 1.70001 1.10441 1.46606 1.30867 0.85952 0.79482 0.79704 0.77938 1.18965 1.22360 1.17876 1.44642 1.12989 1.58616 1.16522 1.19897 0.87106 0.87794 0.87542 1.69613 1.08594 1.34515 1.29583 1.19965 1.04150 0.95699 0.92420 1.21366 0.96956 0.92521 0.99950 1.21052 1.00038 1.01525 0.91356 1.21518 0.96894 0.92429 0.99588 1.18399 1.00591 0.95320 0.92962 1.21421 0.98788 0.94724 0.97078 1.21217 0.98508 0.95410 0.98707 1.21195 0.98586 1.00937 0.92424 1.21264 1.00673 0.94042 0.99434 1.18152 0.99726 0.94289 0.92479 0.93741 0.92453 0.93469 0.94361 0.92548 0.92267 0.76597 0.84493 0.85653 0.82503 0.81792 0.82116 0.82963 0.84668 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 8.45 71.98 0.61 -4.26 16 2 C -0.13 -5.95 5.11 30.59 0.16 -5.79 16 3 C 0.27 12.96 1.83 44.24 0.08 13.04 16 4 H 0.03 1.63 6.59 -2.39 -0.02 1.62 16 5 C -0.53 -30.32 9.31 25.60 0.24 -30.08 16 6 H 0.05 2.80 7.98 -2.91 -0.02 2.77 16 7 C 0.03 1.57 5.45 84.65 0.46 2.04 16 8 N -0.94 -58.30 13.96 21.44 0.30 -58.00 16 9 Si 0.94 46.30 24.41 68.60 1.67 47.97 16 10 H -0.26 -12.28 6.83 99.48 0.68 -11.60 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.25 -12.28 6.53 99.48 0.65 -11.63 16 13 N -0.69 -28.72 3.97 -322.34 -1.28 -30.00 16 14 C 0.46 16.87 5.05 136.34 0.69 17.56 16 15 N -0.79 -29.91 10.13 -51.10 -0.52 -30.43 16 16 C -0.12 -3.60 5.57 -19.85 -0.11 -3.71 16 17 C -0.09 -2.23 9.72 22.52 0.22 -2.01 16 18 C -0.12 -2.28 9.93 21.98 0.22 -2.06 16 19 C -0.09 -1.50 9.75 22.37 0.22 -1.28 16 20 C -0.07 -1.62 5.74 -21.31 -0.12 -1.74 16 21 C -0.10 -1.78 9.77 22.35 0.22 -1.56 16 22 C -0.12 -2.17 9.95 22.04 0.22 -1.95 16 23 C -0.11 -2.62 9.95 22.06 0.22 -2.40 16 24 C -0.14 -3.93 8.93 22.27 0.20 -3.73 16 25 C -0.05 -1.28 5.76 -21.14 -0.12 -1.41 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 2.18 5.60 -2.39 -0.01 2.16 16 28 H 0.05 1.92 7.70 -2.38 -0.02 1.90 16 29 H 0.04 1.78 3.22 -2.39 -0.01 1.78 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 31 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 32 H 0.40 16.22 8.09 -92.71 -0.75 15.48 16 33 H 0.34 11.33 8.75 -92.71 -0.81 10.52 16 34 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.12 3.79 6.30 -2.91 -0.02 3.78 16 Total: -1.00 -68.54 320.34 3.00 -65.54 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.57 Total: 34.26 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 3.39 Total: -29.34 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -1.50 Total: -118.43 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.67 Total: 47.97 kcal Total: -68.54 3.00 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.726 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds