Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47091 * 120.00183 * 2 1 3 5 5 N 1.29948 * 126.28469 * 300.02334 * 4 2 1 6 6 O 1.21303 * 110.24669 * 180.02562 * 5 4 2 7 7 C 1.33643 * 109.81437 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.55048 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47320 * 269.97414 * 8 7 6 10 10 N 1.46498 * 109.47492 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00115 * 180.02562 * 10 9 8 12 12 O 1.21582 * 119.99841 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99722 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99776 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47309 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00205 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99941 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99896 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47654 * 89.99739 * 19 17 15 21 21 H 1.48504 * 109.46832 * 210.00049 * 19 17 15 22 22 H 1.48500 * 109.47242 * 329.99408 * 19 17 15 23 23 N 1.31126 * 106.89467 * 0.02562 * 7 6 5 24 24 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47275 * 299.99918 * 1 2 3 26 26 H 1.09004 * 109.47233 * 60.00162 * 1 2 3 27 27 H 1.09000 * 109.47275 * 240.00082 * 2 1 3 28 28 H 1.08993 * 109.47313 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47163 * 300.00502 * 3 2 1 30 30 H 1.09000 * 109.46958 * 59.99888 * 3 2 1 31 31 H 1.08995 * 109.47428 * 29.97302 * 8 7 6 32 32 H 1.08999 * 109.47183 * 149.97495 * 8 7 6 33 33 H 1.09000 * 109.47216 * 300.00452 * 9 8 7 34 34 H 1.08999 * 109.46926 * 59.99925 * 9 8 7 35 35 H 0.97008 * 119.99615 * 0.02562 * 10 9 8 36 36 H 0.97000 * 120.00299 * 0.02562 * 13 11 10 37 37 H 1.09003 * 109.47139 * 300.00169 * 14 13 11 38 38 H 1.08997 * 109.47557 * 60.00226 * 14 13 11 39 39 H 0.97003 * 119.99901 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3416 -1.1476 3.2215 7 6 3.0008 -2.0772 2.5235 8 6 3.8083 -3.2180 3.0870 9 6 5.2588 -2.7705 3.2783 10 7 6.0440 -3.8797 3.8256 11 6 7.3575 -3.7152 4.0785 12 8 7.8908 -2.6461 3.8529 13 7 8.0796 -4.7355 4.5825 14 6 9.5073 -4.5565 4.8579 15 6 10.0767 -5.8375 5.4110 16 1 9.4388 -6.6987 5.5445 17 6 11.4120 -5.9102 5.7467 18 7 11.9087 -7.0279 6.2298 19 14 12.5152 -4.4205 5.5165 20 1 12.5042 -3.6002 6.7544 21 1 13.9018 -4.8704 5.2331 22 1 12.0169 -3.6064 4.3789 23 7 2.8107 -1.8070 1.2545 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.3910 -3.5185 4.0480 32 1 3.7762 -4.0614 2.3972 33 1 5.6761 -2.4699 2.3173 34 1 5.2909 -1.9271 3.9681 35 1 5.6183 -4.7325 4.0060 36 1 7.6541 -5.5883 4.7628 37 1 10.0258 -4.2977 3.9346 38 1 9.6395 -3.7558 5.5855 39 1 12.8481 -7.0789 6.4663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256123116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = 22.156640 kcal Electronic energy + Delta-G solvation = -20981.217254 eV Core-core repulsion = 17540.970485 eV Total energy + Delta-G solvation = -3440.246769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.88244 -39.43026 -37.22175 -36.20197 -34.70000 -34.17411 -32.77022 -32.24139 -30.08562 -27.70573 -27.67262 -24.93199 -24.62824 -22.95453 -21.92891 -20.63163 -20.19679 -18.43235 -18.33003 -17.73506 -16.36984 -16.15806 -15.71127 -15.42951 -15.19231 -14.56265 -14.34949 -14.09036 -13.91760 -13.86185 -13.17219 -12.91849 -12.71646 -12.60692 -12.39989 -12.30195 -12.11254 -12.01654 -11.67469 -11.57630 -11.46247 -11.20565 -10.98741 -10.75676 -10.18035 -9.96644 -9.66924 -9.46344 -8.98355 -8.75837 -8.05432 -6.20686 -4.22690 0.82665 1.91384 2.39841 3.10028 3.28268 3.33420 3.38366 3.44251 3.72281 3.74953 4.34689 4.37807 4.45943 4.54814 4.57405 4.67321 4.83920 4.95962 5.09441 5.14409 5.14991 5.29787 5.32862 5.37943 5.52912 5.55797 5.68419 5.72022 5.72767 5.83570 6.59502 6.71767 7.11135 7.21236 7.37649 7.51813 7.87884 8.27022 8.66137 8.80052 9.15672 9.40382 10.91188 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.044183 B = 0.002411 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.570900 B =11609.708760 C =11955.825359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.005 4.005 3 C -0.146 4.146 4 C 0.175 3.825 5 N -0.380 5.380 6 O 0.080 5.920 7 C 0.190 3.810 8 C -0.040 4.040 9 C 0.147 3.853 10 N -0.755 5.755 11 C 0.696 3.304 12 O -0.601 6.601 13 N -0.721 5.721 14 C 0.238 3.762 15 C -0.543 4.543 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 N -0.476 5.476 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.393 0.607 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.638 10.263 -10.361 27.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.204 4.204 4 C -0.098 4.098 5 N -0.087 5.087 6 O 0.021 5.979 7 C -0.031 4.031 8 C -0.079 4.079 9 C 0.020 3.980 10 N -0.413 5.413 11 C 0.396 3.604 12 O -0.480 6.480 13 N -0.373 5.373 14 C 0.115 3.885 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.184 1.184 23 N -0.209 5.209 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.230 0.770 36 H 0.226 0.774 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.365 11.802 -10.704 28.280 hybrid contribution 0.355 -0.320 0.267 0.548 sum -23.009 11.482 -10.437 27.752 Atomic orbital electron populations 1.21851 0.92847 1.02557 1.03025 1.19580 0.96400 0.95502 0.90995 1.21859 1.01709 0.93856 1.03008 1.25855 0.96536 0.92768 0.94637 1.74592 1.17584 1.13635 1.02877 1.85320 1.47577 1.29700 1.35262 1.28413 0.94855 0.93893 0.85940 1.20393 0.92781 0.91285 1.03435 1.20909 0.86895 0.89903 1.00278 1.44940 1.08801 1.15622 1.71932 1.16045 0.80564 0.84909 0.78884 1.90882 1.70677 1.26475 1.60008 1.45384 1.11892 1.13200 1.66809 1.19378 0.75400 0.97664 0.96050 1.21088 0.95588 0.97267 1.44118 0.90255 1.24785 0.97722 0.96171 0.93989 1.69880 1.14462 1.25981 1.42695 0.86811 0.79956 0.83115 0.79780 1.19849 1.20944 1.18425 1.71933 1.16799 1.14217 1.17999 0.92295 0.91857 0.90984 0.87948 0.92098 0.90975 0.91839 0.87062 0.86358 0.90874 0.91033 0.77043 0.77353 0.95857 0.96300 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.18 37.16 0.34 -0.58 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.03 9.18 37.16 0.34 -0.69 16 4 C 0.18 1.90 6.72 -156.37 -1.05 0.85 16 5 N -0.38 -4.45 12.16 30.90 0.38 -4.08 16 6 O 0.08 0.88 11.31 18.10 0.20 1.08 16 7 C 0.19 1.88 7.77 -13.06 -0.10 1.78 16 8 C -0.04 -0.28 5.96 -27.88 -0.17 -0.45 16 9 C 0.15 1.60 5.66 -4.04 -0.02 1.58 16 10 N -0.75 -9.51 5.56 -65.23 -0.36 -9.87 16 11 C 0.70 13.14 8.57 -86.92 -0.74 12.40 16 12 O -0.60 -14.01 16.34 5.29 0.09 -13.92 16 13 N -0.72 -14.31 5.55 -66.42 -0.37 -14.68 16 14 C 0.24 5.83 4.50 -5.19 -0.02 5.81 16 15 C -0.54 -14.75 9.83 -34.44 -0.34 -15.09 16 16 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 17 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 19 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 N -0.48 -5.43 11.55 -9.87 -0.11 -5.54 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.40 3.54 8.49 -40.82 -0.35 3.20 16 36 H 0.39 6.69 8.34 -40.82 -0.34 6.35 16 37 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 38 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -34.82 338.16 -6.84 -41.66 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.68 Total: 1.76 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -2.17 Total: 7.32 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.30 Total: -59.75 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.29 Total: -12.84 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.82 -6.84 -41.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256123116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.814 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds