Wall clock time and date at job start Tue Mar 31 2020 05:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 H 1.08999 * 109.47258 * 54.66893 * 3 2 1 5 5 N 1.46495 * 109.47349 * 294.66376 * 3 2 1 6 6 C 1.38824 * 120.00265 * 157.74870 * 5 3 2 7 7 C 1.39798 * 119.58227 * 355.12902 * 6 5 3 8 8 C 1.38596 * 119.49186 * 179.97438 * 7 6 5 9 9 C 1.38389 * 118.67915 * 359.97438 * 8 7 6 10 10 C 1.40558 * 119.15100 * 0.02562 * 9 8 7 11 11 C 1.41308 * 119.78485 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.40028 * 120.00016 * 179.97438 * 11 10 9 14 14 N 1.30737 * 119.99932 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99940 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46970 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46801 * 120.00202 * 15 13 11 18 18 H 1.48499 * 109.47153 * 240.00016 * 15 13 11 19 19 N 1.31952 * 119.58580 * 174.85304 * 6 5 3 20 20 C 1.50708 * 109.46972 * 174.66305 * 3 2 1 21 21 C 1.38232 * 119.99603 * 79.73313 * 20 3 2 22 22 C 1.38240 * 119.99735 * 179.81211 * 21 20 3 23 23 C 1.38231 * 119.99650 * 0.38980 * 22 21 20 24 24 C 1.38233 * 120.00288 * 359.85909 * 23 22 21 25 25 C 1.38225 * 119.99995 * 359.95694 * 24 23 22 26 26 H 1.08997 * 109.47221 * 55.40513 * 1 2 3 27 27 H 1.08992 * 109.47427 * 175.40753 * 1 2 3 28 28 H 1.09004 * 109.46639 * 295.40759 * 1 2 3 29 29 H 1.08998 * 109.47154 * 239.99956 * 2 1 3 30 30 H 1.09000 * 109.47212 * 120.00331 * 2 1 3 31 31 H 0.96999 * 119.99915 * 337.47581 * 5 3 2 32 32 H 1.08000 * 120.25520 * 359.95327 * 7 6 5 33 33 H 1.08001 * 120.66091 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.42288 * 179.97438 * 9 8 7 35 35 H 0.97000 * 120.00489 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00314 * 359.97438 * 21 20 3 37 37 H 1.07999 * 119.99945 * 180.22536 * 22 21 20 38 38 H 1.08003 * 119.99754 * 179.83920 * 23 22 21 39 39 H 1.08005 * 119.99731 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.00122 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 0.8384 5 7 1.6595 2.0950 -1.2551 6 6 1.5847 3.4796 -1.3228 7 6 1.7740 4.2384 -0.1641 8 6 1.6995 5.6206 -0.2339 9 6 1.4386 6.2107 -1.4582 10 6 1.2575 5.3934 -2.5874 11 6 0.9899 5.9817 -3.8440 12 1 0.9246 7.0560 -3.9345 13 6 0.8093 5.1719 -4.9720 14 7 0.8878 3.8715 -4.8624 15 14 0.4548 5.9496 -6.6331 16 1 0.4166 7.4272 -6.4898 17 1 1.5228 5.5733 -7.5938 18 1 -0.8562 5.4665 -7.1361 19 7 1.3413 4.0630 -2.4811 20 6 3.5413 1.4444 0.1322 21 6 4.3327 1.1955 -0.9735 22 6 5.7099 1.2012 -0.8531 23 6 6.2953 1.4477 0.3746 24 6 5.5037 1.6915 1.4813 25 6 4.1268 1.6897 1.3601 26 1 -0.3633 0.5835 -0.8459 27 1 -0.3634 -1.0243 -0.0823 28 1 -0.3633 0.4410 0.9283 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.4635 1.5598 -2.0400 32 1 1.9764 3.7513 0.7783 33 1 1.8431 6.2253 0.6494 34 1 1.3740 7.2853 -1.5448 35 1 0.7631 3.3105 -5.6438 36 1 3.8752 0.9993 -1.9320 37 1 6.3283 1.0103 -1.7177 38 1 7.3711 1.4496 0.4692 39 1 5.9612 1.8838 2.4406 40 1 3.5083 1.8806 2.2247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261365590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:24 Heat of formation + Delta-G solvation = 56.297074 kcal Electronic energy + Delta-G solvation = -21605.092614 eV Core-core repulsion = 18577.175549 eV Total energy + Delta-G solvation = -3027.917066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.44260 -38.02946 -36.09599 -33.53379 -32.05242 -30.84777 -30.59768 -30.15908 -28.40275 -25.51770 -25.30050 -22.45725 -21.99096 -21.40055 -21.01268 -19.68373 -17.35182 -16.69892 -16.31205 -15.37240 -15.09040 -14.79354 -14.37339 -14.21921 -13.73613 -13.64900 -13.27090 -13.14401 -12.80052 -12.53312 -12.45853 -12.07639 -11.79838 -11.74789 -11.24761 -11.04154 -10.94476 -10.89424 -10.76758 -10.68729 -10.52397 -10.29187 -9.85518 -9.48852 -8.88453 -8.64597 -8.43698 -7.86480 -7.46737 -6.48842 -6.29239 -4.42917 1.61258 1.67759 2.89490 3.13176 3.17661 3.28541 3.33100 3.99489 4.01111 4.26947 4.83957 4.95568 5.12859 5.16161 5.25772 5.28202 5.35272 5.54403 5.73816 5.81115 5.90587 5.91900 6.03790 6.11558 6.20728 6.22437 6.25301 6.31991 6.45851 6.63806 6.69894 6.75788 6.86892 6.90315 6.95140 7.04664 7.26598 7.28928 7.64881 7.85933 7.97400 8.20791 8.40880 8.72343 8.84433 9.16870 10.28510 10.44190 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.004942 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.158299 B = 5664.657098 C = 5843.962584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.202 3.798 4 H 0.083 0.917 5 N -0.727 5.727 6 C 0.415 3.585 7 C -0.361 4.361 8 C -0.033 4.033 9 C -0.317 4.317 10 C 0.293 3.707 11 C -0.436 4.436 12 H 0.082 0.918 13 C 0.072 3.928 14 N -0.717 5.717 15 Si 0.903 3.097 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.274 1.274 19 N -0.530 5.530 20 C -0.085 4.085 21 C -0.093 4.093 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.114 4.114 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.395 0.605 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.268 0.732 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 -8.496 7.788 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.094 3.906 4 H 0.101 0.899 5 N -0.363 5.363 6 C 0.175 3.825 7 C -0.386 4.386 8 C -0.057 4.057 9 C -0.341 4.341 10 C 0.166 3.834 11 C -0.468 4.468 12 H 0.100 0.900 13 C -0.152 4.152 14 N -0.338 5.338 15 Si 0.727 3.273 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.200 1.200 19 N -0.251 5.251 20 C -0.087 4.087 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.230 0.770 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.298 -9.172 7.099 12.369 hybrid contribution 0.083 0.778 -0.254 0.822 sum 4.381 -8.395 6.845 11.684 Atomic orbital electron populations 1.21756 0.95120 1.01244 1.02692 1.21744 0.96497 0.95301 1.02489 1.19634 0.88913 0.92961 0.89058 0.89921 1.44162 1.77372 1.03312 1.11452 1.18476 0.89767 0.83999 0.90269 1.20608 1.26894 0.94084 0.97054 1.20587 0.95317 0.93843 0.95989 1.21522 1.19632 0.98557 0.94340 1.18189 0.86745 0.86436 0.92075 1.19598 1.41614 0.94274 0.91297 0.89973 1.26027 0.93833 0.94690 1.00689 1.70157 1.29708 1.04254 1.29723 0.86353 0.78542 0.80619 0.81739 1.18479 1.20004 1.19977 1.68208 1.24609 1.11374 1.20912 1.20549 0.96855 0.98000 0.93322 1.20971 0.93262 0.98395 0.98499 1.21113 0.95040 1.00671 0.97313 1.21046 0.99336 1.01134 0.93193 1.21021 0.93834 1.01047 0.98408 1.20960 0.94773 1.00417 0.97069 0.91662 0.93047 0.92853 0.91541 0.91081 0.77026 0.89260 0.89135 0.88858 0.92109 0.86170 0.86573 0.86725 0.86598 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.86 37.16 0.37 -1.50 16 2 C -0.12 -1.53 5.43 -26.73 -0.15 -1.68 16 3 C 0.20 3.15 1.89 -69.08 -0.13 3.02 16 4 H 0.08 1.34 6.26 -51.93 -0.32 1.02 16 5 N -0.73 -14.16 3.91 -55.03 -0.22 -14.37 16 6 C 0.41 10.02 7.58 -155.32 -1.18 8.85 16 7 C -0.36 -8.40 9.20 -38.87 -0.36 -8.76 16 8 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 9 C -0.32 -8.20 9.83 -38.65 -0.38 -8.58 16 10 C 0.29 8.24 6.55 -85.00 -0.56 7.69 16 11 C -0.44 -11.96 9.14 -37.74 -0.34 -12.30 16 12 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 13 C 0.07 1.87 5.50 -17.35 -0.10 1.77 16 14 N -0.72 -19.08 11.46 55.55 0.64 -18.44 16 15 Si 0.90 18.93 29.56 -169.99 -5.02 13.90 16 16 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 19 N -0.53 -14.61 7.89 -10.33 -0.08 -14.69 16 20 C -0.09 -1.34 4.79 -104.62 -0.50 -1.84 16 21 C -0.09 -1.50 9.32 -39.58 -0.37 -1.87 16 22 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 23 C -0.13 -1.72 10.05 -39.59 -0.40 -2.12 16 24 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 25 C -0.11 -1.62 9.67 -39.59 -0.38 -2.00 16 26 H 0.06 0.95 7.63 -51.93 -0.40 0.55 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.39 7.71 8.69 -40.82 -0.35 7.35 16 32 H 0.09 1.88 6.16 -52.49 -0.32 1.55 16 33 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 36 H 0.12 2.00 7.73 -52.49 -0.41 1.59 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.12 1.46 8.04 -52.48 -0.42 1.04 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -29.95 336.67 -10.86 -40.80 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.58 Total: 12.47 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -5.67 Total: -24.74 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.34 Total: -47.50 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.95 -10.86 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261365590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.098 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds