Wall clock time and date at job start Tue Mar 31 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47498 * 2 1 4 4 H 1.08997 * 109.47507 * 54.84684 * 3 2 1 5 5 C 1.52993 * 109.47545 * 174.85397 * 3 2 1 6 6 N 1.46500 * 109.47519 * 184.90969 * 5 3 2 7 7 C 1.35312 * 125.87268 * 123.71543 * 6 5 3 8 8 C 1.35350 * 106.17382 * 180.02562 * 7 6 5 9 9 C 1.50707 * 126.74853 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.46961 * 95.00601 * 9 8 7 11 11 C 1.34777 * 120.00221 * 180.02562 * 10 9 8 12 12 O 1.21687 * 119.99567 * 359.97438 * 11 10 9 13 13 C 1.46369 * 120.00411 * 179.97438 * 11 10 9 14 14 H 1.08001 * 119.99750 * 7.24584 * 13 11 10 15 15 C 1.40049 * 120.00188 * 187.23769 * 13 11 10 16 16 N 1.30671 * 119.99819 * 7.32743 * 15 13 11 17 17 Si 1.86802 * 120.00178 * 187.32313 * 15 13 11 18 18 H 1.48502 * 109.47059 * 94.98556 * 17 15 13 19 19 H 1.48493 * 109.46997 * 214.98792 * 17 15 13 20 20 H 1.48502 * 109.47052 * 334.98510 * 17 15 13 21 21 N 1.33774 * 106.49873 * 0.02562 * 8 7 6 22 22 N 1.28627 * 108.88412 * 359.97438 * 21 8 7 23 23 O 1.42904 * 109.47295 * 294.85192 * 3 2 1 24 24 C 1.42903 * 113.99976 * 104.51116 * 23 3 2 25 25 H 1.09002 * 109.47037 * 303.67034 * 1 2 3 26 26 H 1.09002 * 109.47327 * 63.66690 * 1 2 3 27 27 H 1.08998 * 109.47265 * 183.66952 * 1 2 3 28 28 H 1.09001 * 109.46951 * 239.99920 * 2 1 3 29 29 H 1.09004 * 109.47383 * 120.00112 * 2 1 3 30 30 H 1.09003 * 109.47764 * 64.90380 * 5 3 2 31 31 H 1.09000 * 109.47166 * 304.90601 * 5 3 2 32 32 H 1.07991 * 126.91295 * 0.02562 * 7 6 5 33 33 H 1.08998 * 109.46770 * 215.00028 * 9 8 7 34 34 H 1.08993 * 109.47187 * 335.00247 * 9 8 7 35 35 H 0.97006 * 120.00214 * 359.97438 * 10 9 8 36 36 H 0.97005 * 119.99725 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.47044 * 185.41953 * 24 23 3 38 38 H 1.09007 * 109.47148 * 305.41510 * 24 23 3 39 39 H 1.08998 * 109.46992 * 65.41605 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6033 1.9823 0.8402 5 6 3.5645 1.4444 0.1294 6 7 4.0429 2.8240 0.2473 7 6 4.7978 3.3180 1.2557 8 6 5.0071 4.6234 0.9655 9 6 5.7943 5.6141 1.7840 10 7 7.1671 5.6845 1.2775 11 6 8.0588 6.5105 1.8599 12 8 7.7233 7.1982 2.8061 13 6 9.4306 6.5804 1.3543 14 1 9.6983 6.0614 0.4458 15 6 10.3960 7.3204 2.0485 16 7 10.1126 7.8290 3.2183 17 14 12.0886 7.5802 1.3022 18 1 12.1192 8.8805 0.5855 19 1 13.1095 7.5851 2.3805 20 1 12.3825 6.4816 0.3473 21 7 4.3777 4.8611 -0.1908 22 7 3.8165 3.7749 -0.5903 23 8 1.6650 2.0803 -1.2225 24 6 0.5773 2.9976 -1.0897 25 1 -0.3633 0.5698 0.8553 26 1 -0.3634 0.4559 -0.9210 27 1 -0.3634 -1.0255 0.0658 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.0048 0.9813 -0.7537 31 1 3.8545 0.8822 1.0171 32 1 5.1604 2.7792 2.1185 33 1 5.3291 6.5971 1.7104 34 1 5.8073 5.2954 2.8262 35 1 7.4347 5.1360 0.5235 36 1 10.7814 8.3412 3.6993 37 1 0.2908 3.3666 -2.0745 38 1 -0.2715 2.4907 -0.6306 39 1 0.8829 3.8351 -0.4626 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262026637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:26 Heat of formation + Delta-G solvation = 8.609286 kcal Electronic energy + Delta-G solvation = -21622.788928 eV Core-core repulsion = 18181.954702 eV Total energy + Delta-G solvation = -3440.834226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.10840 -38.98627 -37.23130 -35.04059 -33.80901 -33.18967 -32.30455 -30.65961 -29.68954 -27.01660 -26.73818 -24.98868 -24.65300 -21.90677 -21.69829 -20.80027 -19.61311 -17.60775 -17.44392 -16.94340 -16.39082 -15.65602 -15.28690 -15.06882 -14.66208 -14.46154 -14.25048 -13.97476 -13.60284 -13.51719 -13.25272 -12.84985 -12.62879 -12.21654 -12.03821 -11.82165 -11.68433 -11.52065 -11.23864 -11.18450 -11.11006 -10.92537 -10.54109 -10.40301 -10.20365 -10.12873 -9.71199 -9.11032 -8.80263 -7.56200 -7.46545 -6.18247 -4.58313 1.69956 2.30628 2.70886 3.17865 3.25137 3.28492 3.34032 4.02449 4.16117 4.34779 4.38148 4.49187 4.61826 4.68418 4.78053 4.93163 4.97452 5.02139 5.16093 5.18099 5.20687 5.33732 5.35149 5.44380 5.51306 5.60181 5.66384 5.76059 5.87147 6.17501 6.48897 6.55313 6.65359 6.83127 7.48184 7.97129 8.11890 8.38504 8.72320 9.06950 9.57279 10.63369 10.81299 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.043024 B = 0.002788 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.645516 B =10042.196446 C =10121.462476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C 0.077 3.923 4 H 0.070 0.930 5 C 0.112 3.888 6 N -0.297 5.297 7 C -0.047 4.047 8 C -0.019 4.019 9 C 0.217 3.783 10 N -0.761 5.761 11 C 0.559 3.441 12 O -0.583 6.583 13 C -0.545 4.545 14 H 0.068 0.932 15 C 0.089 3.911 16 N -0.771 5.771 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 N -0.262 5.262 22 N -0.069 5.069 23 O -0.364 6.364 24 C 0.035 3.965 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.190 0.810 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.381 0.619 36 H 0.268 0.732 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.088 -18.234 -4.755 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.018 3.982 4 H 0.088 0.912 5 C -0.010 4.010 6 N -0.091 5.091 7 C -0.198 4.198 8 C -0.156 4.156 9 C 0.090 3.910 10 N -0.417 5.417 11 C 0.363 3.637 12 O -0.467 6.467 13 C -0.582 4.582 14 H 0.086 0.914 15 C -0.130 4.130 16 N -0.399 5.399 17 Si 0.733 3.267 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 N -0.129 5.129 22 N -0.048 5.048 23 O -0.282 6.282 24 C -0.061 4.061 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.207 0.793 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.213 0.787 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.884 -17.271 -5.374 25.437 hybrid contribution 1.276 -0.600 0.532 1.507 sum -16.608 -17.872 -4.842 24.873 Atomic orbital electron populations 1.21780 0.94974 1.02131 1.02162 1.21910 0.97181 0.95184 1.03325 1.22406 0.92244 0.94529 0.89062 0.91216 1.22380 0.95303 0.77621 1.05671 1.47278 1.35039 1.10990 1.15775 1.23469 1.02586 0.96275 0.97438 1.22343 1.03116 0.94239 0.95919 1.19042 0.83105 0.94890 0.93965 1.46158 1.08841 1.48662 1.38025 1.18201 0.84963 0.78290 0.82212 1.90589 1.79795 1.45839 1.30430 1.20866 0.92965 1.33532 1.10853 0.91382 1.25684 0.99764 0.93658 0.93910 1.69989 1.33873 1.25435 1.10652 0.86360 0.81729 0.79353 0.79303 1.19744 1.20519 1.18940 1.75162 1.09899 1.17083 1.10793 1.78443 1.19628 0.91200 1.15543 1.87984 1.52267 1.58475 1.29458 1.22836 0.88329 0.92030 1.02938 0.92837 0.91983 0.92170 0.90358 0.90569 0.87528 0.86577 0.79319 0.91548 0.91553 0.78736 0.92083 0.89452 0.94184 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.88 37.15 0.33 -0.46 16 2 C -0.14 -0.71 5.64 -26.74 -0.15 -0.86 16 3 C 0.08 0.58 2.46 -26.74 -0.07 0.52 16 4 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 5 C 0.11 0.86 6.16 -4.05 -0.02 0.84 16 6 N -0.30 -3.72 3.43 -61.27 -0.21 -3.93 16 7 C -0.05 -0.62 11.50 -17.05 -0.20 -0.82 16 8 C -0.02 -0.32 6.62 -82.77 -0.55 -0.87 16 9 C 0.22 4.39 6.23 -5.19 -0.03 4.36 16 10 N -0.76 -17.84 5.54 -62.90 -0.35 -18.19 16 11 C 0.56 16.27 7.71 -12.99 -0.10 16.17 16 12 O -0.58 -19.12 15.12 5.20 0.08 -19.04 16 13 C -0.55 -15.74 9.53 -35.63 -0.34 -16.08 16 14 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 15 C 0.09 2.53 5.48 -17.37 -0.10 2.44 16 16 N -0.77 -23.33 11.92 55.55 0.66 -22.67 16 17 Si 0.91 20.51 29.57 -169.99 -5.03 15.48 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 N -0.26 -4.88 12.41 33.29 0.41 -4.46 16 22 N -0.07 -1.11 12.12 60.35 0.73 -0.38 16 23 O -0.36 -3.74 9.11 -35.23 -0.32 -4.06 16 24 C 0.04 0.31 10.36 101.05 1.05 1.36 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.37 6.87 -51.93 -0.36 0.01 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.12 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.38 8.26 8.44 -40.82 -0.34 7.92 16 36 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.28 6.43 -51.92 -0.33 -0.06 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -37.61 336.10 -4.76 -42.37 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.63 Total: 3.23 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.18 Total: 6.59 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 1.25 Total: -49.63 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.24 Total: -23.10 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.61 -4.76 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262026637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.979 kcal (2) G-P(sol) polarization free energy of solvation -37.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds