Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46694 * 2 1 4 4 H 1.08994 * 109.47058 * 305.64296 * 3 2 1 5 5 C 1.53003 * 109.46764 * 185.64962 * 3 2 1 6 6 N 1.46500 * 109.47165 * 175.00461 * 5 3 2 7 7 C 1.35305 * 125.87294 * 124.99783 * 6 5 3 8 8 C 1.35357 * 106.17684 * 179.97438 * 7 6 5 9 9 C 1.50694 * 126.75169 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47518 * 94.99821 * 9 8 7 11 11 C 1.34777 * 120.00451 * 179.97438 * 10 9 8 12 12 O 1.21694 * 119.99514 * 0.02562 * 11 10 9 13 13 C 1.46372 * 120.00329 * 180.02562 * 11 10 9 14 14 H 1.08004 * 119.99740 * 359.97438 * 13 11 10 15 15 C 1.40043 * 120.00244 * 180.02562 * 13 11 10 16 16 N 1.30676 * 119.99696 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00184 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47153 * 89.99926 * 17 15 13 19 19 H 1.48509 * 109.46981 * 209.99793 * 17 15 13 20 20 H 1.48499 * 109.46969 * 329.99489 * 17 15 13 21 21 N 1.33772 * 106.49174 * 359.97438 * 8 7 6 22 22 N 1.28637 * 108.88891 * 359.73242 * 21 8 7 23 23 O 1.42902 * 109.47181 * 65.64922 * 3 2 1 24 24 C 1.42901 * 113.99707 * 259.18943 * 23 3 2 25 25 H 1.08998 * 109.47105 * 295.45538 * 1 2 3 26 26 H 1.09004 * 109.47330 * 175.46171 * 1 2 3 27 27 H 1.08997 * 109.47416 * 55.45858 * 1 2 3 28 28 H 1.09004 * 109.46725 * 119.99664 * 2 1 3 29 29 H 1.08996 * 109.46703 * 239.99945 * 2 1 3 30 30 H 1.09008 * 109.46612 * 294.99640 * 5 3 2 31 31 H 1.08996 * 109.47101 * 54.99525 * 5 3 2 32 32 H 1.08003 * 126.91039 * 0.02562 * 7 6 5 33 33 H 1.09009 * 109.47055 * 214.99829 * 9 8 7 34 34 H 1.09000 * 109.46996 * 334.99735 * 9 8 7 35 35 H 0.97007 * 120.00022 * 0.02562 * 10 9 8 36 36 H 0.97003 * 119.99621 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.47286 * 294.58969 * 24 23 3 38 38 H 1.08998 * 109.47263 * 54.58357 * 24 23 3 39 39 H 1.09000 * 109.47096 * 174.59176 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9846 -0.8351 5 6 3.5633 1.4449 -0.1420 6 7 4.0405 2.8248 -0.2619 7 6 4.9736 3.4121 0.5225 8 6 5.1083 4.6787 0.0645 9 6 6.0297 5.7404 0.6070 10 7 7.2763 5.7450 -0.1624 11 6 8.2554 6.6184 0.1457 12 8 8.1041 7.4030 1.0636 13 6 9.5007 6.6233 -0.6235 14 1 9.6351 5.9267 -1.4378 15 6 10.5183 7.5305 -0.3029 16 7 10.3558 8.3730 0.6827 17 14 12.1072 7.5372 -1.2851 18 1 11.9763 8.4714 -2.4320 19 1 13.2261 7.9774 -0.4134 20 1 12.3825 6.1683 -1.7905 21 7 4.2625 4.8024 -0.9645 22 7 3.6491 3.6847 -1.1361 23 8 1.6749 2.0768 1.2274 24 6 0.5337 2.9305 1.1235 25 1 -0.3633 0.4417 0.9279 26 1 -0.3634 -1.0245 -0.0813 27 1 -0.3634 0.5827 -0.8465 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 4.0108 0.9808 0.7370 31 1 3.8461 0.8839 -1.0327 32 1 5.5047 2.9607 1.3475 33 1 5.5488 6.7153 0.5254 34 1 6.2497 5.5304 1.6538 35 1 7.3968 5.1198 -0.8943 36 1 11.0604 9.0017 0.9045 37 1 0.7689 3.7743 0.4747 38 1 -0.3017 2.3708 0.7030 39 1 0.2634 3.2978 2.1135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262026638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = 7.715914 kcal Electronic energy + Delta-G solvation = -21617.567805 eV Core-core repulsion = 18176.694839 eV Total energy + Delta-G solvation = -3440.872966 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.12045 -39.07847 -37.21654 -35.08687 -33.79013 -33.20244 -32.28549 -30.67385 -29.74354 -27.07701 -26.75566 -24.98061 -24.68735 -21.94174 -21.74683 -20.73565 -19.59698 -17.62483 -17.37836 -16.91728 -16.62140 -15.70798 -15.28346 -15.14777 -14.67292 -14.47477 -14.24316 -13.97292 -13.65313 -13.42406 -13.31653 -12.82891 -12.68964 -12.30750 -12.13273 -11.74817 -11.70560 -11.52819 -11.31593 -11.16209 -11.09593 -10.91553 -10.52811 -10.41129 -10.24461 -10.17043 -9.76426 -9.10674 -8.80244 -7.55298 -7.44738 -6.13454 -4.58386 1.69951 2.30342 2.69469 3.18347 3.21831 3.24836 3.28299 4.08521 4.16387 4.35956 4.40556 4.51239 4.63082 4.66584 4.81064 4.87227 4.91223 5.04879 5.08397 5.16033 5.22717 5.29873 5.36307 5.39814 5.44481 5.56871 5.67911 5.74659 5.88661 6.18555 6.50372 6.56937 6.64332 6.71906 7.48755 7.97937 8.13152 8.38641 8.67572 9.07713 9.58762 10.65117 10.83619 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.043667 B = 0.002832 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.057475 B = 9885.148462 C =10204.193402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.082 0.918 5 C 0.115 3.885 6 N -0.292 5.292 7 C -0.030 4.030 8 C -0.020 4.020 9 C 0.217 3.783 10 N -0.761 5.761 11 C 0.557 3.443 12 O -0.581 6.581 13 C -0.543 4.543 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.266 1.266 21 N -0.254 5.254 22 N -0.098 5.098 23 O -0.379 6.379 24 C 0.028 3.972 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.190 0.810 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.381 0.619 36 H 0.268 0.732 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.374 -19.065 -0.597 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.015 3.985 4 H 0.100 0.900 5 C -0.007 4.007 6 N -0.085 5.085 7 C -0.181 4.181 8 C -0.158 4.158 9 C 0.090 3.910 10 N -0.417 5.417 11 C 0.361 3.639 12 O -0.464 6.464 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.733 3.267 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.190 1.190 21 N -0.121 5.121 22 N -0.077 5.077 23 O -0.297 6.297 24 C -0.068 4.068 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.207 0.793 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.212 0.788 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.263 -18.105 -0.809 25.729 hybrid contribution 1.288 -0.669 -0.125 1.457 sum -16.974 -18.774 -0.934 25.327 Atomic orbital electron populations 1.21815 0.95000 1.02199 1.02159 1.21933 0.97191 0.95260 1.03344 1.22495 0.92599 0.94584 0.88786 0.90017 1.22331 0.95245 0.77710 1.05372 1.47157 1.27440 1.12262 1.21621 1.23433 0.97852 0.95119 1.01712 1.22317 1.01128 0.95448 0.96933 1.19037 0.83569 0.93746 0.94606 1.46154 1.15738 1.42157 1.37694 1.18212 0.82652 0.78941 0.84123 1.90603 1.81142 1.41462 1.33151 1.20862 0.99279 1.20321 1.17572 0.91477 1.25703 0.99243 0.94005 0.94270 1.70028 1.31931 1.14469 1.23291 0.86373 0.81243 0.79186 0.79928 1.19744 1.20492 1.18983 1.75091 1.07390 1.13951 1.15695 1.78193 1.21631 0.94661 1.13217 1.87905 1.48257 1.62459 1.31126 1.22930 0.87672 0.93242 1.02937 0.92075 0.92132 0.92633 0.90480 0.90421 0.86897 0.87182 0.79318 0.91513 0.91520 0.78805 0.92142 0.93717 0.93430 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.76 37.16 0.33 -0.48 16 2 C -0.14 -0.73 5.64 -26.73 -0.15 -0.88 16 3 C 0.07 0.58 2.35 -26.73 -0.06 0.51 16 4 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 5 C 0.12 0.90 6.12 -4.04 -0.02 0.87 16 6 N -0.29 -3.67 3.38 -61.26 -0.21 -3.88 16 7 C -0.03 -0.41 11.50 -17.05 -0.20 -0.61 16 8 C -0.02 -0.35 6.62 -82.78 -0.55 -0.90 16 9 C 0.22 4.44 6.23 -5.20 -0.03 4.41 16 10 N -0.76 -17.88 5.54 -62.90 -0.35 -18.23 16 11 C 0.56 16.22 7.75 -12.99 -0.10 16.12 16 12 O -0.58 -19.10 15.02 5.19 0.08 -19.02 16 13 C -0.54 -15.68 9.54 -35.63 -0.34 -16.02 16 14 H 0.07 1.79 7.85 -52.48 -0.41 1.37 16 15 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 16 N -0.77 -23.37 11.83 55.55 0.66 -22.72 16 17 Si 0.91 20.48 29.56 -169.99 -5.02 15.46 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 N -0.25 -4.71 12.41 33.29 0.41 -4.30 16 22 N -0.10 -1.55 12.84 60.35 0.77 -0.77 16 23 O -0.38 -3.72 10.08 -35.23 -0.36 -4.07 16 24 C 0.03 0.24 10.37 101.05 1.05 1.29 16 25 H 0.06 0.36 6.65 -51.93 -0.35 0.01 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.11 0.66 8.07 -51.92 -0.42 0.24 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.19 1.99 8.06 -52.48 -0.42 1.57 16 33 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.38 8.21 8.44 -40.82 -0.34 7.87 16 36 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.32 5.99 -51.93 -0.31 0.01 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -37.40 336.56 -4.70 -42.11 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.59 Total: 3.65 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.18 Total: 6.70 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 1.29 Total: -49.89 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.28 Total: -23.09 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.40 -4.70 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262026638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.821 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds