Wall clock time and date at job start Tue Mar 31 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 5 5 N 1.29998 * 126.22105 * 60.02012 * 4 2 1 6 6 O 1.21281 * 110.45946 * 179.97438 * 5 4 2 7 7 C 1.34000 * 109.75957 * 359.97438 * 6 5 4 8 8 N 1.37967 * 126.65750 * 180.02562 * 7 6 5 9 9 C 1.34771 * 119.99910 * 359.97438 * 8 7 6 10 10 O 1.21569 * 119.99886 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00052 * 179.97438 * 9 8 7 12 12 C 1.46507 * 120.00143 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47295 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47275 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47038 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00600 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99795 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00255 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99990 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46954 * 59.99530 * 19 17 15 21 21 H 1.48501 * 109.46893 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46916 * 299.99536 * 19 17 15 23 23 N 1.32024 * 106.68914 * 359.76237 * 7 6 5 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 28 28 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 0.97001 * 119.99751 * 179.97438 * 8 7 6 32 32 H 0.97001 * 120.00374 * 0.02562 * 11 9 8 33 33 H 1.09005 * 109.47154 * 300.00535 * 12 11 9 34 34 H 1.09001 * 109.46902 * 59.99951 * 12 11 9 35 35 H 1.09005 * 109.47511 * 300.00383 * 13 12 11 36 36 H 1.09001 * 109.47131 * 60.00158 * 13 12 11 37 37 H 1.09006 * 109.46995 * 299.99916 * 14 13 12 38 38 H 1.08993 * 109.47327 * 60.00134 * 14 13 12 39 39 H 0.96996 * 120.00247 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 1.7944 -0.3729 -2.4632 6 8 2.3391 -1.1424 -3.2261 7 6 3.0008 -2.0774 -2.5307 8 7 3.7398 -3.1207 -3.0493 9 6 3.8471 -3.2721 -4.3842 10 8 3.2924 -2.4898 -5.1313 11 7 4.5694 -4.2909 -4.8909 12 6 4.6866 -4.4553 -6.3419 13 6 5.5540 -5.6777 -6.6484 14 6 5.6769 -5.8490 -8.1638 15 6 6.5308 -7.0535 -8.4656 16 1 6.9448 -7.6382 -7.6574 17 6 6.7843 -7.4086 -9.7735 18 7 6.2806 -6.6963 -10.7577 19 14 7.8433 -8.9012 -10.1476 20 1 7.2154 -10.1129 -9.5622 21 1 7.9625 -9.0675 -11.6185 22 1 9.1935 -8.7101 -9.5596 23 7 2.8131 -1.8033 -1.2529 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 4.1821 -3.7451 -2.4532 32 1 5.0118 -4.9154 -4.2948 33 1 3.6953 -4.5953 -6.7730 34 1 5.1475 -3.5661 -6.7722 35 1 6.5453 -5.5372 -6.2174 36 1 5.0935 -6.5671 -6.2180 37 1 4.6857 -5.9894 -8.5951 38 1 6.1376 -4.9597 -8.5938 39 1 6.4587 -6.9463 -11.6778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310851802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:56 Heat of formation + Delta-G solvation = 0.536122 kcal Electronic energy + Delta-G solvation = -21043.185254 eV Core-core repulsion = 17602.000949 eV Total energy + Delta-G solvation = -3441.184305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.60538 -41.66287 -37.91522 -37.54568 -36.75046 -35.31459 -34.94105 -33.13420 -31.80190 -28.66401 -28.13245 -25.93466 -25.53509 -24.51554 -23.04242 -22.34765 -21.09975 -19.92346 -19.32940 -19.30840 -18.47994 -17.78354 -17.09649 -16.66346 -16.31647 -16.04962 -15.77919 -15.53166 -15.16861 -14.42426 -14.26117 -13.77344 -13.75389 -13.62696 -13.25426 -13.17438 -12.71114 -12.66576 -12.54882 -12.50323 -12.40950 -12.34989 -12.00869 -11.86401 -11.86032 -11.64829 -11.42005 -11.19161 -10.53048 -10.51489 -10.07504 -8.17249 -6.28219 -0.00005 0.44752 1.03958 1.43823 1.46163 1.53935 1.81857 1.82096 2.43192 2.58833 2.98408 3.16874 3.37433 3.99135 4.06514 4.06640 4.12381 4.24823 4.50743 4.57447 4.60205 4.72890 4.84715 4.87339 4.88356 4.90738 4.97517 5.05205 5.19197 5.26079 5.27998 5.31842 5.41998 5.55738 5.74857 5.87759 6.24589 6.50983 6.89882 7.04978 7.13795 7.41326 8.94379 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.071761 B = 0.002209 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.089294 B =12674.903135 C =12863.329892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.005 4.005 3 C -0.142 4.142 4 C 0.200 3.800 5 N -0.408 5.408 6 O 0.056 5.944 7 C 0.425 3.575 8 N -0.594 5.594 9 C 0.702 3.298 10 O -0.592 6.592 11 N -0.701 5.701 12 C 0.145 3.855 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.266 1.266 23 N -0.511 5.511 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.455 0.545 32 H 0.423 0.577 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.073 0.927 37 H -0.006 1.006 38 H -0.006 1.006 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 9.647 25.792 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 C -0.200 4.200 4 C -0.074 4.074 5 N -0.126 5.126 6 O 0.010 5.990 7 C 0.115 3.885 8 N -0.259 5.259 9 C 0.401 3.599 10 O -0.467 6.467 11 N -0.357 5.357 12 C 0.021 3.979 13 C -0.140 4.140 14 C -0.016 4.016 15 C -0.577 4.577 16 H 0.087 0.913 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.190 1.190 23 N -0.255 5.255 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.301 0.699 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.732 10.883 24.975 28.319 hybrid contribution 0.999 -1.410 -0.688 1.860 sum -6.733 9.474 24.287 26.925 Atomic orbital electron populations 1.21852 0.91861 1.02554 1.03727 1.19869 0.97163 0.95760 0.89670 1.21850 1.01183 0.93233 1.03728 1.26290 0.94357 0.91504 0.95260 1.74649 1.20111 1.14571 1.03313 1.85628 1.49125 1.29892 1.34369 1.24051 0.91143 0.88251 0.85012 1.41190 1.50720 1.26764 1.07259 1.15940 0.80497 0.82747 0.80724 1.91078 1.51409 1.46291 1.57955 1.44928 1.52735 1.29027 1.08989 1.21330 1.00322 0.99034 0.77208 1.21615 0.99200 0.95770 0.97405 1.18954 0.95391 0.95496 0.91783 1.21668 1.31261 1.12442 0.92374 0.91344 1.26014 0.97562 1.00117 0.96534 1.70102 1.46512 1.41289 0.99610 0.85499 0.79334 0.79420 0.76776 1.19047 1.21472 1.19040 1.72256 1.22807 1.17509 1.12954 0.93161 0.92739 0.88221 0.86209 0.93163 0.88218 0.92756 0.69910 0.73901 0.92401 0.92414 0.90856 0.90849 0.98806 0.98802 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 2 C 0.00 -0.07 3.39 -11.54 -0.04 -0.11 16 3 C -0.14 -1.74 9.17 71.98 0.66 -1.08 16 4 C 0.20 4.61 6.71 138.50 0.93 5.54 16 5 N -0.41 -11.66 12.15 -59.00 -0.72 -12.37 16 6 O 0.06 1.77 9.69 92.22 0.89 2.66 16 7 C 0.43 10.75 8.99 179.12 1.61 12.36 16 8 N -0.59 -11.57 5.37 -438.70 -2.35 -13.92 16 9 C 0.70 18.33 8.52 179.06 1.53 19.86 16 10 O -0.59 -21.61 15.15 16.73 0.25 -21.36 16 11 N -0.70 -15.62 5.56 -478.55 -2.66 -18.28 16 12 C 0.14 4.45 5.67 86.38 0.49 4.94 16 13 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 14 C 0.02 1.06 4.97 29.85 0.15 1.21 16 15 C -0.54 -28.87 9.11 25.60 0.23 -28.63 16 16 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 18 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 19 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 N -0.51 -11.88 11.59 -311.88 -3.61 -15.50 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.46 4.71 8.83 -92.71 -0.82 3.89 16 32 H 0.42 5.88 8.49 -92.71 -0.79 5.09 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 38 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -73.72 339.31 0.42 -73.30 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -0.53 Total: 6.55 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.84 Total: 9.89 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -9.06 Total: -115.83 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 1.15 Total: -18.70 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -73.72 0.42 -73.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310851802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.835 kcal (2) G-P(sol) polarization free energy of solvation -73.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds