Wall clock time and date at job start Tue Mar 31 2020 06:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30297 * 126.34523 * 2 1 4 4 N 1.28528 * 110.05530 * 180.02562 * 3 2 1 5 5 C 1.31219 * 109.85692 * 0.02562 * 4 3 2 6 6 N 1.38582 * 126.47441 * 179.97438 * 5 4 3 7 7 N 1.40105 * 119.99555 * 0.02562 * 6 5 4 8 8 C 1.34777 * 119.99775 * 179.72270 * 7 6 5 9 9 O 1.21588 * 120.00208 * 180.27510 * 8 7 6 10 10 N 1.34774 * 119.99902 * 0.27790 * 8 7 6 11 11 C 1.46507 * 119.99765 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46773 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47283 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99869 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00197 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00192 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99995 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47420 * 89.99847 * 18 16 14 20 20 H 1.48503 * 109.47256 * 210.00274 * 18 16 14 21 21 H 1.48498 * 109.47124 * 329.99714 * 18 16 14 22 22 N 1.36451 * 107.05535 * 0.22268 * 5 4 3 23 23 C 1.46503 * 127.13854 * 179.77400 * 22 5 4 24 24 H 1.09005 * 109.47182 * 89.97389 * 1 2 3 25 25 H 1.08999 * 109.47476 * 209.97336 * 1 2 3 26 26 H 1.09001 * 109.47555 * 329.97723 * 1 2 3 27 27 H 0.97000 * 120.00601 * 180.02562 * 6 5 4 28 28 H 0.97001 * 120.00437 * 0.02562 * 7 6 5 29 29 H 0.97004 * 120.00566 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.46860 * 299.99768 * 11 10 8 31 31 H 1.08997 * 109.47067 * 60.00417 * 11 10 8 32 32 H 1.08992 * 109.47421 * 299.99837 * 12 11 10 33 33 H 1.08997 * 109.46955 * 60.00383 * 12 11 10 34 34 H 1.09000 * 109.46931 * 299.99975 * 13 12 11 35 35 H 1.09004 * 109.46840 * 59.99829 * 13 12 11 36 36 H 0.97005 * 119.99785 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46705 * 90.02501 * 23 22 5 38 38 H 1.08995 * 109.47378 * 210.02505 * 23 22 5 39 39 H 1.08998 * 109.46928 * 330.03082 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6890 -0.0005 5 6 3.5945 -0.6207 -0.0015 6 7 4.7580 -1.3736 -0.0028 7 7 6.0052 -0.7354 -0.0026 8 6 7.1368 -1.4676 0.0017 9 8 8.2192 -0.9138 0.0069 10 7 7.0684 -2.8136 0.0004 11 6 8.2985 -3.6094 0.0046 12 6 7.9430 -5.0976 0.0026 13 6 9.2276 -5.9288 0.0063 14 6 8.8775 -7.3946 0.0037 15 1 7.8423 -7.7025 0.0002 16 6 9.8786 -8.3424 0.0069 17 7 9.5731 -9.6216 0.0051 18 14 11.6691 -7.8099 0.0151 19 1 12.1376 -7.6703 1.4173 20 1 12.4923 -8.8301 -0.6826 21 1 11.8008 -6.5058 -0.6829 22 7 2.3174 -1.1013 -0.0066 23 6 1.9010 -2.5058 -0.0140 24 1 -0.3634 0.0005 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3634 0.8898 0.5142 27 1 4.7089 -2.3423 -0.0038 28 1 6.0544 0.2334 -0.0013 29 1 6.2049 -3.2555 -0.0034 30 1 8.8861 -3.3747 -0.8829 31 1 8.8791 -3.3762 0.8971 32 1 7.3556 -5.3320 0.8902 33 1 7.3622 -5.3312 -0.8897 34 1 9.8146 -5.6943 -0.8816 35 1 9.8088 -5.6952 0.8984 36 1 10.2776 -10.2885 0.0070 37 1 1.7949 -2.8587 1.0118 38 1 0.9458 -2.5989 -0.5308 39 1 2.6524 -3.1048 -0.5284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311914594.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:59 Heat of formation + Delta-G solvation = 90.614370 kcal Electronic energy + Delta-G solvation = -21250.438375 eV Core-core repulsion = 17845.452907 eV Total energy + Delta-G solvation = -3404.985468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.23923 -40.23175 -36.95524 -35.73144 -35.42333 -33.42339 -32.78619 -31.44800 -30.36218 -27.93230 -27.36333 -27.19479 -23.31009 -22.29992 -21.69257 -20.95636 -20.42964 -19.00216 -18.47471 -17.05993 -16.99602 -16.69731 -15.91512 -15.83966 -15.31738 -14.59445 -14.49723 -14.33837 -14.06235 -13.94645 -13.62601 -13.39373 -13.04667 -12.76530 -12.50398 -12.05191 -11.98159 -11.82152 -11.18809 -10.96678 -10.64386 -10.61235 -10.56880 -10.13541 -9.94532 -9.77967 -9.76882 -9.30634 -9.08039 -8.61671 -7.88863 -6.12743 -4.12015 1.05963 1.52635 2.31749 2.62470 2.84285 3.01837 3.27289 3.35315 3.39132 3.93637 4.09273 4.28352 4.39069 4.48353 4.50909 4.79147 4.99828 5.04920 5.21575 5.29779 5.31204 5.50947 5.55761 5.60054 5.89855 5.99457 6.17495 6.33904 6.40336 6.50162 6.67148 6.80377 7.02438 7.14240 7.27894 7.68612 7.84591 8.33474 8.42773 8.54459 8.90057 9.49484 11.00341 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027484 B = 0.002797 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.525796 B =10009.242080 C =10991.400727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.165 3.835 3 N -0.270 5.270 4 N -0.340 5.340 5 C 0.447 3.553 6 N -0.510 5.510 7 N -0.514 5.514 8 C 0.712 3.288 9 O -0.569 6.569 10 N -0.739 5.739 11 C 0.129 3.871 12 C -0.113 4.113 13 C -0.011 4.011 14 C -0.524 4.524 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 N -0.500 5.500 23 C 0.071 3.929 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.429 0.571 28 H 0.442 0.558 29 H 0.388 0.612 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.867 14.925 -0.092 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 N -0.108 5.108 4 N -0.188 5.188 5 C 0.090 3.910 6 N -0.254 5.254 7 N -0.272 5.272 8 C 0.411 3.589 9 O -0.442 6.442 10 N -0.395 5.395 11 C 0.006 3.994 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.562 4.562 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.188 1.188 22 N -0.202 5.202 23 C -0.072 4.072 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.273 0.727 28 H 0.288 0.712 29 H 0.221 0.779 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.342 16.535 -0.095 24.695 hybrid contribution 0.111 -1.764 0.018 1.767 sum -18.232 14.771 -0.076 23.464 Atomic orbital electron populations 1.20158 0.83455 1.04458 1.03875 1.24596 0.96382 0.81615 1.07735 1.73948 0.95788 1.23759 1.17313 1.74563 1.12201 1.04315 1.27732 1.20486 0.79689 0.89771 1.01075 1.41262 0.93256 1.04921 1.85931 1.44448 0.92167 1.08624 1.82004 1.15727 0.82420 0.82200 0.78509 1.91048 1.23803 1.70495 1.58818 1.45369 1.10744 1.04036 1.79322 1.21644 0.84337 0.90980 1.02400 1.21722 1.01170 0.90594 1.01642 1.19502 0.92787 0.95772 0.96834 1.21063 0.95126 0.88602 1.51365 0.91067 1.25025 0.99246 0.94800 0.94376 1.69908 1.33249 1.00134 1.50835 0.86775 0.85042 0.78843 0.78648 1.20203 1.21339 1.18835 1.45908 1.04454 1.09018 1.60789 1.22125 1.03207 0.77483 1.04403 0.89793 0.90516 0.88644 0.72668 0.71206 0.77854 0.91424 0.91436 0.92130 0.92113 0.96173 0.96609 0.92638 0.89719 0.88403 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.09 36.00 0.36 0.12 16 2 C 0.17 1.45 8.07 -154.02 -1.24 0.21 16 3 N -0.27 -3.44 12.18 32.99 0.40 -3.03 16 4 N -0.34 -4.58 11.77 30.31 0.36 -4.22 16 5 C 0.45 4.72 8.81 -318.87 -2.81 1.91 16 6 N -0.51 -4.72 6.42 30.31 0.19 -4.52 16 7 N -0.51 -6.00 6.32 27.63 0.17 -5.83 16 8 C 0.71 10.09 8.68 -86.92 -0.75 9.33 16 9 O -0.57 -10.36 17.18 5.29 0.09 -10.27 16 10 N -0.74 -9.29 5.52 -65.22 -0.36 -9.65 16 11 C 0.13 1.99 5.67 -4.04 -0.02 1.96 16 12 C -0.11 -1.94 5.27 -26.73 -0.14 -2.08 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.22 9.66 -34.44 -0.33 -14.56 16 15 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 18 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 22 N -0.50 -3.83 3.21 -121.46 -0.39 -4.22 16 23 C 0.07 0.21 10.80 59.85 0.65 0.86 16 24 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.14 7.95 -51.93 -0.41 -0.27 16 26 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.43 2.84 6.16 -182.59 -1.12 1.72 16 28 H 0.44 5.34 8.44 -182.59 -1.54 3.80 16 29 H 0.39 3.66 6.39 -40.82 -0.26 3.40 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 35 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.10 0.10 7.91 -51.93 -0.41 -0.31 16 39 H 0.09 0.17 7.65 -51.93 -0.40 -0.22 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -36.47 333.90 -10.36 -46.83 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.46 Total: 0.44 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -4.50 Total: -0.80 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 1.15 Total: -57.80 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.47 -10.36 -46.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311914594.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.441 kcal (2) G-P(sol) polarization free energy of solvation -36.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds