Wall clock time and date at job start Tue Mar 31 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46896 * 109.46869 * 2 1 4 4 C 1.46894 * 111.00006 * 298.11818 * 3 2 1 5 5 C 1.50700 * 109.47731 * 292.92046 * 4 3 2 6 6 H 1.08008 * 119.99715 * 354.95601 * 5 4 3 7 7 C 1.37874 * 120.00314 * 174.95903 * 5 4 3 8 8 N 1.31516 * 120.00293 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47420 * 59.99498 * 9 7 5 11 11 H 1.48498 * 109.47312 * 179.97438 * 9 7 5 12 12 H 1.48511 * 109.46697 * 299.99743 * 9 7 5 13 13 C 1.46892 * 111.00062 * 62.07642 * 3 2 1 14 14 C 1.50702 * 109.47584 * 66.04341 * 13 3 2 15 15 N 1.31131 * 126.54992 * 90.24653 * 14 13 3 16 16 C 1.34492 * 105.61598 * 180.13004 * 15 14 13 17 17 C 1.50699 * 126.28976 * 179.90757 * 16 15 14 18 18 C 1.50703 * 109.47299 * 269.70845 * 17 16 15 19 19 O 1.21283 * 119.99450 * 0.02562 * 18 17 16 20 20 N 1.34766 * 120.00124 * 180.02562 * 18 17 16 21 21 C 1.46506 * 120.00061 * 180.02562 * 20 18 17 22 22 N 1.29947 * 107.42130 * 359.63877 * 16 15 14 23 23 O 1.21300 * 110.25484 * 0.23524 * 22 16 15 24 24 H 1.08996 * 109.46998 * 179.65149 * 1 2 3 25 25 H 1.08994 * 109.46838 * 299.64647 * 1 2 3 26 26 H 1.09002 * 109.47257 * 59.64703 * 1 2 3 27 27 H 1.09001 * 109.47010 * 239.99791 * 2 1 3 28 28 H 1.09000 * 109.46889 * 120.00122 * 2 1 3 29 29 H 1.09001 * 109.47311 * 52.92464 * 4 3 2 30 30 H 1.09003 * 109.47074 * 172.91882 * 4 3 2 31 31 H 0.96991 * 120.00014 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47638 * 306.04218 * 13 3 2 33 33 H 1.08999 * 109.47081 * 186.04319 * 13 3 2 34 34 H 1.08999 * 109.47068 * 149.71207 * 17 16 15 35 35 H 1.08997 * 109.47237 * 29.70981 * 17 16 15 36 36 H 0.97002 * 120.00401 * 0.27162 * 20 18 17 37 37 H 1.09006 * 109.46620 * 299.99770 * 21 20 18 38 38 H 1.08993 * 109.47186 * 59.99401 * 21 20 18 39 39 H 1.08998 * 109.47106 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5857 2.0967 -1.2095 5 6 2.2652 1.4996 -2.4149 6 1 3.0114 0.7292 -2.2877 7 6 1.9343 1.9368 -3.6799 8 7 1.0253 2.8745 -3.8348 9 14 2.7761 1.1961 -5.1740 10 1 2.5110 -0.2644 -5.2183 11 1 2.2465 1.8324 -6.4068 12 1 4.2398 1.4310 -5.0847 13 6 1.5896 2.0953 1.2117 14 6 2.2534 1.4804 2.4169 15 7 3.4034 1.8323 2.9395 16 6 3.5903 1.0120 3.9888 17 6 4.7742 1.0122 4.9213 18 6 5.8314 0.0781 4.3913 19 8 5.6423 -0.5277 3.3578 20 7 6.9868 -0.0840 5.0657 21 6 8.0148 -0.9916 4.5502 22 7 2.5599 0.2230 4.0542 23 8 1.7801 0.4756 3.1600 24 1 -0.3633 -1.0276 -0.0063 25 1 -0.3633 0.5083 0.8931 26 1 -0.3634 0.5193 -0.8868 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.5052 2.0033 -1.3181 30 1 1.8528 3.1503 -1.1266 31 1 0.7923 3.1818 -4.7248 32 1 0.5073 2.0174 1.3138 33 1 1.8728 3.1453 1.1371 34 1 4.4580 0.6795 5.9099 35 1 5.1819 2.0207 4.9906 36 1 7.1365 0.3976 5.8944 37 1 7.6070 -2.0001 4.4802 38 1 8.3313 -0.6583 3.5619 39 1 8.8710 -0.9915 5.2247 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318946259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:41 Heat of formation + Delta-G solvation = 41.516156 kcal Electronic energy + Delta-G solvation = -22187.184625 eV Core-core repulsion = 18747.777347 eV Total energy + Delta-G solvation = -3439.407277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.30915 -39.81766 -37.51500 -35.76255 -34.80727 -33.19150 -32.41965 -30.41289 -29.60305 -27.95050 -26.67882 -25.27275 -23.58703 -23.04104 -21.77255 -20.66055 -19.51627 -18.12311 -17.41232 -17.05914 -16.25167 -16.16520 -15.68751 -15.26676 -14.93007 -14.50108 -14.16232 -13.97220 -13.76253 -13.44465 -13.05510 -12.71215 -12.54030 -12.24826 -12.10917 -11.84033 -11.56746 -11.43054 -11.16005 -10.99703 -10.80276 -10.69999 -10.57099 -10.20742 -10.09583 -9.89553 -9.63881 -9.41773 -9.27173 -8.43480 -7.36380 -6.03506 -4.04219 1.39493 2.32714 2.41695 3.00276 3.13882 3.36027 3.39370 3.43776 3.71918 4.14336 4.43856 4.52248 4.86142 4.93383 4.97448 4.98460 5.25675 5.32495 5.40726 5.55297 5.58647 5.74984 5.78777 5.96983 6.01557 6.07844 6.10089 6.25588 6.40446 6.64873 6.87461 7.14079 7.19046 7.34162 7.75022 7.97198 7.97414 8.08575 8.41065 8.45716 9.02889 9.59856 11.07128 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.004030 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.352059 B = 6945.753259 C = 7872.187182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.526 5.526 4 C 0.191 3.809 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.899 5.899 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.136 3.864 14 C 0.215 3.785 15 N -0.467 5.467 16 C 0.179 3.821 17 C -0.046 4.046 18 C 0.515 3.485 19 O -0.516 6.516 20 N -0.737 5.737 21 C 0.088 3.912 22 N -0.384 5.384 23 O 0.074 5.926 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.011 0.989 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.402 0.598 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.786 -2.905 19.947 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.252 5.252 4 C 0.067 3.933 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.006 3.994 14 C -0.006 4.006 15 N -0.200 5.200 16 C -0.095 4.095 17 C -0.087 4.087 18 C 0.299 3.701 19 O -0.390 6.390 20 N -0.390 5.390 21 C -0.056 4.056 22 N -0.092 5.092 23 O 0.016 5.984 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.236 0.764 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.361 -3.630 19.671 21.314 hybrid contribution -0.343 -0.115 -0.567 0.672 sum 7.018 -3.745 19.104 20.694 Atomic orbital electron populations 1.22385 0.98712 1.01602 1.02054 1.22058 0.92597 0.90694 1.01877 1.62391 1.59351 1.02284 1.01169 1.19852 0.95152 0.93801 0.84482 1.21065 1.22022 1.21560 0.89817 0.91839 1.24943 0.95239 0.95205 0.98995 1.69932 1.31836 1.29092 1.22996 0.86557 0.79905 0.79278 0.81679 1.20257 1.21373 1.20149 1.20683 0.96544 0.98293 0.83926 1.28998 0.89683 0.86146 0.95789 1.71853 1.14012 1.26274 1.07897 1.24753 0.96613 0.91944 0.96177 1.19791 0.89298 1.02457 0.97147 1.20284 0.82638 0.82645 0.84497 1.90822 1.78571 1.46710 1.22895 1.45675 1.17569 1.48017 1.27752 1.21549 0.90082 0.93795 1.00170 1.74509 1.03746 1.21514 1.09427 1.85276 1.40349 1.42710 1.30082 0.92945 0.93562 0.90868 0.89329 0.93290 0.97139 0.95123 0.92831 0.91373 0.86718 0.86302 0.85637 0.76425 0.92191 0.91953 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.26 37.16 0.34 -2.99 16 2 C 0.06 1.12 5.71 -3.82 -0.02 1.10 16 3 N -0.53 -11.31 4.68 -237.53 -1.11 -12.42 16 4 C 0.19 4.74 4.53 -4.98 -0.02 4.72 16 5 C -0.51 -14.00 8.40 -34.44 -0.29 -14.29 16 6 H 0.06 1.79 7.38 -52.48 -0.39 1.40 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 2.39 5.38 -4.98 -0.03 2.36 16 14 C 0.21 3.82 7.07 -13.06 -0.09 3.73 16 15 N -0.47 -8.48 11.55 -9.87 -0.11 -8.59 16 16 C 0.18 2.87 6.71 -156.38 -1.05 1.83 16 17 C -0.05 -0.49 6.33 -29.03 -0.18 -0.67 16 18 C 0.52 6.57 7.82 -10.99 -0.09 6.48 16 19 O -0.52 -9.62 16.03 5.55 0.09 -9.53 16 20 N -0.74 -6.02 5.71 -67.08 -0.38 -6.40 16 21 C 0.09 0.68 10.70 59.85 0.64 1.32 16 22 N -0.38 -6.59 12.16 30.90 0.38 -6.21 16 23 O 0.07 1.30 10.67 18.11 0.19 1.49 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.73 6.34 -51.93 -0.33 0.40 16 26 H 0.07 1.45 6.28 -51.93 -0.33 1.12 16 27 H 0.09 1.93 6.99 -51.93 -0.36 1.57 16 28 H 0.05 0.96 6.72 -51.93 -0.35 0.61 16 29 H 0.01 0.28 6.01 -51.93 -0.31 -0.03 16 30 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.07 1.06 6.07 -51.93 -0.32 0.75 16 33 H 0.11 1.92 7.92 -51.93 -0.41 1.51 16 34 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.40 1.64 8.83 -40.82 -0.36 1.28 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -35.31 329.92 -6.38 -41.70 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.24 Total: -1.46 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.88 Total: 5.10 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.50 Total: -58.93 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.28 Total: -8.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.31 -6.38 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318946259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.211 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds