Wall clock time and date at job start Tue Mar 31 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03821 * 2 1 4 4 C 1.35319 * 107.74770 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.04107 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47186 * 20.00168 * 5 4 3 7 7 C 1.53001 * 109.47073 * 260.00533 * 5 4 3 8 8 O 1.42902 * 109.47222 * 304.99872 * 7 5 4 9 9 N 1.46500 * 109.47111 * 140.00409 * 5 4 3 10 10 C 1.34775 * 120.00036 * 205.00337 * 9 5 4 11 11 O 1.21583 * 119.99900 * 359.97438 * 10 9 5 12 12 N 1.34775 * 119.99961 * 180.02562 * 10 9 5 13 13 C 1.46499 * 120.00063 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47398 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47263 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00209 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47075 * 89.99605 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00111 * 19 17 15 22 22 H 1.48510 * 109.46691 * 329.99821 * 19 17 15 23 23 C 1.39877 * 107.91756 * 0.02562 * 4 3 2 24 24 N 1.30833 * 108.20100 * 359.97438 * 23 4 3 25 25 H 1.09000 * 109.47005 * 269.99454 * 1 2 3 26 26 H 1.09003 * 109.46946 * 29.99763 * 1 2 3 27 27 H 1.09006 * 109.46968 * 149.99628 * 1 2 3 28 28 H 1.07994 * 126.12681 * 0.02720 * 3 2 1 29 29 H 1.08995 * 109.47416 * 64.99981 * 7 5 4 30 30 H 1.09006 * 109.47164 * 185.00176 * 7 5 4 31 31 H 0.96700 * 114.00195 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99953 * 25.00340 * 9 5 4 33 33 H 0.97001 * 120.00028 * 359.97438 * 12 10 9 34 34 H 1.09003 * 109.47419 * 299.99935 * 13 12 10 35 35 H 1.09007 * 109.47383 * 59.99625 * 13 12 10 36 36 H 1.08996 * 109.47317 * 300.00195 * 14 13 12 37 37 H 1.09007 * 109.46932 * 60.00233 * 14 13 12 38 38 H 0.97004 * 120.00217 * 180.02562 * 18 17 15 39 39 H 1.07995 * 125.89269 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0013 6 1 4.5003 2.5416 0.3501 7 6 5.3276 1.6390 -1.4222 8 8 5.5697 0.3240 -1.9266 9 7 5.7822 0.9705 0.8860 10 6 6.7166 1.7647 1.4451 11 8 6.7181 2.9581 1.2126 12 7 7.6499 1.2358 2.2610 13 6 8.6659 2.0990 2.8683 14 6 9.5951 1.2554 3.7433 15 6 10.6406 2.1433 4.3675 16 1 10.6420 3.2033 4.1611 17 6 11.5954 1.6022 5.2021 18 7 11.5935 0.3114 5.4538 19 14 12.8910 2.7029 5.9764 20 1 12.3948 3.2092 7.2812 21 1 14.1382 1.9253 6.1890 22 1 13.1701 3.8491 5.0743 23 6 3.5346 -0.7322 -0.0015 24 7 2.2891 -1.1328 -0.0010 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.9281 2.1192 0.0004 29 1 4.6075 2.1472 -2.0636 30 1 6.2618 2.2006 -1.4086 31 1 5.9265 0.3069 -2.8252 32 1 5.7811 0.0183 1.0712 33 1 7.6488 0.2837 2.4461 34 1 9.2465 2.5843 2.0837 35 1 8.1790 2.8573 3.4816 36 1 9.0142 0.7705 4.5279 37 1 10.0820 0.4969 3.1302 38 1 12.2650 -0.0692 6.0413 39 1 4.4054 -1.3710 -0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320191722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:43 Heat of formation + Delta-G solvation = -4.845427 kcal Electronic energy + Delta-G solvation = -21543.684750 eV Core-core repulsion = 18102.267083 eV Total energy + Delta-G solvation = -3441.417667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45259 -39.53225 -37.13848 -35.00640 -34.40697 -33.15651 -32.76528 -31.06128 -29.45478 -28.18032 -26.64441 -24.67962 -22.91167 -21.56712 -20.95415 -20.39778 -19.92351 -18.15839 -17.36808 -17.03549 -16.30348 -15.83734 -15.55704 -15.18250 -14.62127 -14.53051 -14.48396 -13.97434 -13.70327 -13.55434 -13.25684 -13.01625 -12.95693 -12.59890 -12.33298 -12.22688 -11.70956 -11.13889 -10.99845 -10.71572 -10.59516 -10.26975 -10.08389 -9.84355 -9.58569 -9.50473 -9.21664 -8.96234 -8.57982 -8.43524 -8.16866 -6.05145 -4.07595 1.67689 2.30359 2.60086 3.21504 3.32401 3.38476 3.43160 3.67330 4.23336 4.29948 4.43395 4.61703 4.74002 4.80231 4.85751 5.04964 5.09994 5.20800 5.31884 5.36303 5.44516 5.57590 5.76382 5.93722 6.37255 6.46038 6.46782 6.70786 6.78779 6.84385 7.08673 7.36192 7.52390 7.58607 7.63353 7.69315 7.94517 8.31314 8.53174 8.97756 9.08543 9.56876 11.06563 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031470 B = 0.002809 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.525686 B = 9966.450257 C =10224.615929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.063 3.937 4 C -0.235 4.235 5 C 0.249 3.751 6 H 0.102 0.898 7 C 0.069 3.931 8 O -0.564 6.564 9 N -0.738 5.738 10 C 0.700 3.300 11 O -0.604 6.604 12 N -0.738 5.738 13 C 0.141 3.859 14 C 0.012 3.988 15 C -0.520 4.520 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.080 3.920 24 N -0.302 5.302 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.174 0.826 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.374 0.626 32 H 0.395 0.605 33 H 0.393 0.607 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.348 -1.112 -14.449 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.084 4.084 4 C -0.247 4.247 5 C 0.142 3.858 6 H 0.120 0.880 7 C -0.010 4.010 8 O -0.369 6.369 9 N -0.394 5.394 10 C 0.400 3.600 11 O -0.483 6.483 12 N -0.392 5.392 13 C 0.018 3.982 14 C -0.025 4.025 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.107 4.107 24 N -0.123 5.123 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.191 0.809 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.220 0.780 32 H 0.229 0.771 33 H 0.226 0.774 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.419 -1.294 -13.941 26.431 hybrid contribution 1.446 0.517 0.080 1.537 sum -20.973 -0.777 -13.861 25.151 Atomic orbital electron populations 1.21831 0.74302 1.04349 1.03358 1.48433 1.06568 1.03865 1.57252 1.22243 0.90629 0.93483 1.02062 1.19949 0.93629 0.94344 1.16823 1.18855 0.83394 0.96018 0.87529 0.87988 1.22650 0.99443 0.84401 0.94544 1.86476 1.87469 1.27975 1.34959 1.45055 1.31737 1.10946 1.51623 1.16052 0.79637 0.85194 0.79087 1.90865 1.76546 1.13820 1.67084 1.45518 1.31588 1.12064 1.49984 1.21566 0.87676 0.93127 0.95808 1.19327 0.93516 0.95485 0.94189 1.21060 1.12218 0.94550 1.28014 0.92237 1.24999 0.97837 0.95068 0.96444 1.69960 1.35432 1.10993 1.36984 0.86516 0.80888 0.80508 0.79658 1.20595 1.21211 1.19732 1.23641 0.94876 0.94366 0.97822 1.77389 1.01739 1.08046 1.25110 0.90780 0.89568 0.89382 0.80864 0.93448 0.92676 0.78020 0.77067 0.77365 0.92849 0.92864 0.95984 0.95952 0.92890 0.80083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.47 59.85 0.69 1.22 16 2 N -0.38 -3.65 4.01 -68.16 -0.27 -3.92 16 3 C 0.06 0.57 11.40 -17.22 -0.20 0.38 16 4 C -0.24 -2.56 4.84 -105.05 -0.51 -3.06 16 5 C 0.25 2.96 2.80 -69.08 -0.19 2.76 16 6 H 0.10 1.28 7.57 -51.93 -0.39 0.89 16 7 C 0.07 0.75 6.84 37.16 0.25 1.00 16 8 O -0.56 -5.78 12.53 -35.23 -0.44 -6.22 16 9 N -0.74 -10.01 5.01 -59.82 -0.30 -10.31 16 10 C 0.70 12.45 8.53 -86.92 -0.74 11.71 16 11 O -0.60 -12.75 16.01 5.29 0.08 -12.67 16 12 N -0.74 -13.46 5.56 -65.23 -0.36 -13.82 16 13 C 0.14 3.09 5.61 -4.04 -0.02 3.06 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.08 0.92 10.50 -17.36 -0.18 0.73 16 24 N -0.30 -3.69 12.57 30.62 0.39 -3.31 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.37 2.42 9.12 45.56 0.42 2.84 16 32 H 0.40 4.70 7.65 -40.82 -0.31 4.39 16 33 H 0.39 6.29 8.49 -40.82 -0.35 5.95 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 39 H 0.18 1.87 7.72 -52.49 -0.41 1.47 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -35.85 339.41 -6.34 -42.19 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.81 Total: 7.47 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.46 Total: 4.62 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.19 Total: -57.07 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.36 Total: -18.89 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.85 -6.34 -42.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320191722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.345 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds