Wall clock time and date at job start Tue Mar 31 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03821 * 2 1 4 4 C 1.35319 * 107.74770 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.04107 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47186 * 20.00168 * 5 4 3 7 7 C 1.53001 * 109.47073 * 260.00533 * 5 4 3 8 8 O 1.42902 * 109.47222 * 304.99872 * 7 5 4 9 9 N 1.46500 * 109.47111 * 140.00409 * 5 4 3 10 10 C 1.34775 * 120.00036 * 205.00337 * 9 5 4 11 11 O 1.21583 * 119.99900 * 359.97438 * 10 9 5 12 12 N 1.34775 * 119.99961 * 180.02562 * 10 9 5 13 13 C 1.46499 * 120.00063 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47398 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47263 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00209 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47075 * 89.99605 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00111 * 19 17 15 22 22 H 1.48510 * 109.46691 * 329.99821 * 19 17 15 23 23 C 1.39877 * 107.91756 * 0.02562 * 4 3 2 24 24 N 1.30833 * 108.20100 * 359.97438 * 23 4 3 25 25 H 1.09000 * 109.47005 * 269.99454 * 1 2 3 26 26 H 1.09003 * 109.46946 * 29.99763 * 1 2 3 27 27 H 1.09006 * 109.46968 * 149.99628 * 1 2 3 28 28 H 1.07994 * 126.12681 * 0.02720 * 3 2 1 29 29 H 1.08995 * 109.47416 * 64.99981 * 7 5 4 30 30 H 1.09006 * 109.47164 * 185.00176 * 7 5 4 31 31 H 0.96700 * 114.00195 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99953 * 25.00340 * 9 5 4 33 33 H 0.97001 * 120.00028 * 359.97438 * 12 10 9 34 34 H 1.09003 * 109.47419 * 299.99935 * 13 12 10 35 35 H 1.09007 * 109.47383 * 59.99625 * 13 12 10 36 36 H 1.08996 * 109.47317 * 300.00195 * 14 13 12 37 37 H 1.09007 * 109.46932 * 60.00233 * 14 13 12 38 38 H 0.97004 * 120.00217 * 180.02562 * 18 17 15 39 39 H 1.07995 * 125.89269 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0013 6 1 4.5003 2.5416 0.3501 7 6 5.3276 1.6390 -1.4222 8 8 5.5697 0.3240 -1.9266 9 7 5.7822 0.9705 0.8860 10 6 6.7166 1.7647 1.4451 11 8 6.7181 2.9581 1.2126 12 7 7.6499 1.2358 2.2610 13 6 8.6659 2.0990 2.8683 14 6 9.5951 1.2554 3.7433 15 6 10.6406 2.1433 4.3675 16 1 10.6420 3.2033 4.1611 17 6 11.5954 1.6022 5.2021 18 7 11.5935 0.3114 5.4538 19 14 12.8910 2.7029 5.9764 20 1 12.3948 3.2092 7.2812 21 1 14.1382 1.9253 6.1890 22 1 13.1701 3.8491 5.0743 23 6 3.5346 -0.7322 -0.0015 24 7 2.2891 -1.1328 -0.0010 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.9281 2.1192 0.0004 29 1 4.6075 2.1472 -2.0636 30 1 6.2618 2.2006 -1.4086 31 1 5.9265 0.3069 -2.8252 32 1 5.7811 0.0183 1.0712 33 1 7.6488 0.2837 2.4461 34 1 9.2465 2.5843 2.0837 35 1 8.1790 2.8573 3.4816 36 1 9.0142 0.7705 4.5279 37 1 10.0820 0.4969 3.1302 38 1 12.2650 -0.0692 6.0413 39 1 4.4054 -1.3710 -0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320191722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:42 Heat of formation + Delta-G solvation = -34.359060 kcal Electronic energy + Delta-G solvation = -21544.964557 eV Core-core repulsion = 18102.267083 eV Total energy + Delta-G solvation = -3442.697474 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23298 -40.89808 -38.10155 -36.55396 -35.61162 -34.77934 -33.87788 -32.23950 -31.01344 -29.16206 -27.29366 -26.60612 -23.95969 -22.86571 -22.35590 -21.54480 -20.90193 -19.43886 -18.42779 -18.17251 -17.96350 -16.85477 -16.62733 -16.47130 -16.28237 -15.75868 -15.39851 -15.17682 -15.11587 -14.69090 -14.32927 -14.23097 -14.01032 -13.55723 -13.25964 -13.20959 -13.15774 -12.91254 -12.55093 -12.49461 -12.19612 -11.65034 -11.52665 -11.46358 -11.19338 -10.81822 -10.58356 -10.34498 -10.26781 -9.68870 -9.34031 -8.21804 -6.32110 0.94834 1.43272 1.44182 1.55403 1.63087 1.74684 2.01560 2.25290 2.43592 3.12974 3.43464 3.48978 3.62839 4.03375 4.17277 4.29214 4.39642 4.47419 4.50651 4.55483 4.57175 4.63203 4.73030 4.79170 4.90576 4.94033 5.08468 5.36055 5.55235 5.62767 5.62866 5.66830 5.82289 6.10890 6.15557 6.20032 6.75147 6.81540 6.96392 7.17728 7.37208 7.66273 8.90264 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031470 B = 0.002809 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.525686 B = 9966.450257 C =10224.615929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.074 3.926 4 C -0.252 4.252 5 C 0.248 3.752 6 H 0.096 0.904 7 C 0.076 3.924 8 O -0.575 6.575 9 N -0.721 5.721 10 C 0.701 3.299 11 O -0.637 6.637 12 N -0.736 5.736 13 C 0.162 3.838 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.060 0.940 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 C 0.070 3.930 24 N -0.337 5.337 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.209 0.791 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.390 0.610 32 H 0.405 0.595 33 H 0.405 0.595 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.493 -0.322 -14.940 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.074 4.074 4 C -0.265 4.265 5 C 0.142 3.858 6 H 0.114 0.886 7 C -0.004 4.004 8 O -0.382 6.382 9 N -0.376 5.376 10 C 0.401 3.599 11 O -0.519 6.519 12 N -0.390 5.390 13 C 0.038 3.962 14 C -0.014 4.014 15 C -0.583 4.583 16 H 0.078 0.922 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.791 3.209 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.115 4.115 24 N -0.159 5.159 25 H 0.102 0.898 26 H 0.135 0.865 27 H 0.107 0.893 28 H 0.226 0.774 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.239 0.761 32 H 0.240 0.760 33 H 0.239 0.761 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -23.612 -0.556 -14.468 27.697 hybrid contribution 1.680 0.229 0.179 1.705 sum -21.932 -0.327 -14.289 26.178 Atomic orbital electron populations 1.22197 0.71936 1.06021 1.04515 1.48791 1.07940 1.03283 1.56040 1.22774 0.89999 0.94812 0.99845 1.19859 0.93892 0.93877 1.18844 1.18965 0.83372 0.95855 0.87624 0.88572 1.22512 0.98868 0.84564 0.94417 1.86439 1.87661 1.27615 1.36438 1.44976 1.30772 1.11055 1.50808 1.16105 0.79920 0.84989 0.78900 1.90839 1.77452 1.15422 1.68195 1.45243 1.31278 1.12263 1.50241 1.21049 0.87701 0.92583 0.94874 1.19131 0.93397 0.95073 0.93839 1.21476 1.13233 0.95040 1.28570 0.92161 1.25893 1.00041 0.96514 0.96868 1.70069 1.36398 1.12683 1.37630 0.85429 0.78008 0.78672 0.78841 1.19762 1.20581 1.18949 1.23735 0.94972 0.94860 0.97961 1.77327 1.02294 1.09797 1.26468 0.89842 0.86451 0.89250 0.77422 0.91072 0.94935 0.76110 0.75977 0.76053 0.93775 0.93763 0.97473 0.97432 0.92586 0.79989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.47 127.77 1.47 2.19 16 2 N -0.38 -6.49 4.01 -369.56 -1.48 -7.97 16 3 C 0.07 1.16 11.40 83.54 0.95 2.12 16 4 C -0.25 -5.11 4.84 -20.14 -0.10 -5.20 16 5 C 0.25 5.62 2.80 44.24 0.12 5.74 16 6 H 0.10 2.31 7.57 -2.39 -0.02 2.29 16 7 C 0.08 1.55 6.84 71.98 0.49 2.04 16 8 O -0.57 -11.07 12.53 -148.98 -1.87 -12.94 16 9 N -0.72 -19.16 5.01 -461.42 -2.31 -21.47 16 10 C 0.70 24.81 8.53 179.06 1.53 26.34 16 11 O -0.64 -26.96 16.01 -3.98 -0.06 -27.02 16 12 N -0.74 -26.93 5.56 -478.54 -2.66 -29.60 16 13 C 0.16 7.20 5.61 86.38 0.48 7.69 16 14 C 0.02 1.19 5.09 29.85 0.15 1.34 16 15 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.01 0.30 5.46 84.65 0.46 0.77 16 18 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 19 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 C 0.07 1.57 10.50 85.24 0.89 2.46 16 24 N -0.34 -7.93 12.57 -57.02 -0.72 -8.64 16 25 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.39 4.52 9.12 -74.06 -0.68 3.84 16 32 H 0.40 9.38 7.65 -92.71 -0.71 8.67 16 33 H 0.40 12.95 8.49 -92.71 -0.79 12.16 16 34 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.36 16 37 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.18 3.74 7.72 -2.91 -0.02 3.71 16 Total: -1.00 -76.79 339.41 -1.18 -77.97 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -1.08 Total: 23.62 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.69 Total: 14.88 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -6.89 Total: -122.57 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.93 Total: -39.96 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -76.79 -1.18 -77.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320191722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.614 kcal (2) G-P(sol) polarization free energy of solvation -76.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds