Wall clock time and date at job start Tue Mar 31 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03991 * 2 1 4 4 C 1.35316 * 107.74613 * 179.75096 * 3 2 1 5 5 C 1.50706 * 126.04256 * 180.27593 * 4 3 2 6 6 H 1.09001 * 109.46637 * 340.16333 * 5 4 3 7 7 C 1.52997 * 109.47097 * 100.16476 * 5 4 3 8 8 O 1.42899 * 109.47255 * 55.00145 * 7 5 4 9 9 N 1.46499 * 109.47155 * 220.16598 * 5 4 3 10 10 C 1.34776 * 119.99923 * 154.99718 * 9 5 4 11 11 O 1.21581 * 119.99981 * 359.97438 * 10 9 5 12 12 N 1.34777 * 119.99780 * 179.97438 * 10 9 5 13 13 C 1.46497 * 120.00063 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47450 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.46991 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00567 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99652 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47276 * 59.99723 * 19 17 15 21 21 H 1.48505 * 109.47136 * 180.02562 * 19 17 15 22 22 H 1.48513 * 109.46872 * 299.99674 * 19 17 15 23 23 C 1.39870 * 107.92161 * 0.39436 * 4 3 2 24 24 N 1.30836 * 108.20019 * 359.59732 * 23 4 3 25 25 H 1.09002 * 109.47159 * 269.97891 * 1 2 3 26 26 H 1.08999 * 109.46542 * 29.97403 * 1 2 3 27 27 H 1.08999 * 109.47324 * 149.97201 * 1 2 3 28 28 H 1.08002 * 126.12737 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47090 * 175.00483 * 7 5 4 30 30 H 1.09000 * 109.46899 * 295.00036 * 7 5 4 31 31 H 0.96702 * 113.99336 * 180.02562 * 8 7 5 32 32 H 0.97009 * 119.99832 * 334.99651 * 9 5 4 33 33 H 0.97001 * 120.00302 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.47162 * 299.99935 * 13 12 10 35 35 H 1.09005 * 109.47340 * 59.99476 * 13 12 10 36 36 H 1.09003 * 109.46522 * 300.00038 * 14 13 12 37 37 H 1.08998 * 109.47036 * 59.99137 * 14 13 12 38 38 H 0.96998 * 119.99375 * 180.02562 * 18 17 15 39 39 H 1.08002 * 125.90382 * 179.86983 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5451 0.0135 6 1 4.5013 2.5430 -0.3345 7 6 5.3237 1.6327 1.4363 8 8 5.5644 0.3156 1.9357 9 7 5.7847 0.9741 -0.8734 10 6 6.7207 1.7706 -1.4265 11 8 6.7211 2.9631 -1.1896 12 7 7.6563 1.2452 -2.2420 13 6 8.6740 2.1109 -2.8427 14 6 9.6064 1.2707 -3.7178 15 6 10.6529 2.1613 -4.3362 16 1 10.6528 3.2208 -4.1265 17 6 11.6106 1.6236 -5.1698 18 7 11.6110 0.3334 -5.4248 19 14 12.9083 2.7275 -5.9358 20 1 13.6956 3.3849 -4.8619 21 1 13.8132 1.9120 -6.7852 22 1 12.2473 3.7634 -6.7699 23 6 3.5347 -0.7322 0.0000 24 7 2.2891 -1.1328 0.0001 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3632 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 1.9282 2.1193 -0.0004 29 1 6.2578 2.1944 1.4277 30 1 4.6018 2.1383 2.0778 31 1 5.9179 0.2948 2.8356 32 1 5.7841 0.0226 -1.0626 33 1 7.6562 0.2937 -2.4307 34 1 8.1890 2.8717 -3.4542 35 1 9.2524 2.5928 -2.0545 36 1 10.0915 0.5101 -3.1058 37 1 9.0283 0.7884 -4.5060 38 1 12.2850 -0.0448 -6.0109 39 1 4.4054 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320191723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:48 Heat of formation + Delta-G solvation = -4.805328 kcal Electronic energy + Delta-G solvation = -21543.502838 eV Core-core repulsion = 18102.086910 eV Total energy + Delta-G solvation = -3441.415928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45241 -39.53206 -37.13879 -35.00615 -34.40682 -33.15631 -32.76404 -31.06003 -29.45420 -28.18048 -26.64504 -24.67785 -22.91043 -21.56692 -20.95332 -20.39776 -19.92302 -18.15788 -17.36843 -17.03418 -16.30158 -15.84749 -15.54293 -15.18400 -14.61953 -14.53616 -14.48779 -13.96664 -13.70847 -13.56289 -13.25761 -13.01539 -12.94120 -12.59867 -12.33814 -12.22071 -11.70901 -11.14504 -10.98060 -10.71609 -10.61282 -10.26142 -10.08449 -9.84640 -9.58597 -9.50160 -9.22937 -8.96135 -8.58099 -8.43075 -8.16811 -6.04929 -4.07445 1.67664 2.30392 2.60066 3.21488 3.34238 3.37908 3.41801 3.67317 4.23670 4.30205 4.43470 4.61701 4.73871 4.79891 4.85719 5.04853 5.10028 5.20813 5.31972 5.36309 5.44541 5.57621 5.76408 5.93742 6.37275 6.46078 6.46783 6.70798 6.78770 6.84407 7.08706 7.36194 7.52368 7.58556 7.63253 7.69416 7.94623 8.31431 8.53199 8.97655 9.08554 9.56914 11.06749 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.002808 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.485609 B = 9968.859665 C =10225.621578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.063 3.937 4 C -0.235 4.235 5 C 0.249 3.751 6 H 0.102 0.898 7 C 0.069 3.931 8 O -0.564 6.564 9 N -0.738 5.738 10 C 0.700 3.300 11 O -0.604 6.604 12 N -0.738 5.738 13 C 0.141 3.859 14 C 0.013 3.987 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.079 3.921 24 N -0.302 5.302 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.174 0.826 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.374 0.626 32 H 0.395 0.605 33 H 0.393 0.607 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.382 -1.181 14.232 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.084 4.084 4 C -0.247 4.247 5 C 0.142 3.858 6 H 0.120 0.880 7 C -0.010 4.010 8 O -0.369 6.369 9 N -0.394 5.394 10 C 0.400 3.600 11 O -0.483 6.483 12 N -0.392 5.392 13 C 0.018 3.982 14 C -0.025 4.025 15 C -0.559 4.559 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.107 4.107 24 N -0.123 5.123 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.191 0.809 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.229 0.771 33 H 0.226 0.774 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.452 -1.365 13.720 26.348 hybrid contribution 1.449 0.528 -0.037 1.543 sum -21.003 -0.837 13.683 25.081 Atomic orbital electron populations 1.21830 0.74303 1.04476 1.03228 1.48434 1.06567 1.03866 1.57255 1.22245 0.90630 0.93485 1.02050 1.19949 0.93632 0.94341 1.16823 1.18858 0.83356 0.96064 0.87522 0.87988 1.22647 0.99451 0.84356 0.94583 1.86477 1.87648 1.27892 1.34860 1.45058 1.31529 1.11016 1.51761 1.16053 0.79647 0.85181 0.79089 1.90865 1.76622 1.13898 1.66930 1.45518 1.31401 1.12138 1.50098 1.21567 0.87628 0.93078 0.95909 1.19320 0.93477 0.95493 0.94180 1.21022 1.12139 0.94555 1.28212 0.92290 1.25000 0.97835 0.95082 0.96408 1.69952 1.35295 1.11103 1.37020 0.86573 0.81291 0.80416 0.79244 1.20120 1.21292 1.20133 1.23642 0.94880 0.94367 0.97819 1.77393 1.01739 1.08044 1.25108 0.90880 0.89525 0.89335 0.80862 0.92674 0.93451 0.78019 0.77063 0.77364 0.92856 0.92862 0.95961 0.95991 0.92831 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.47 59.85 0.69 1.22 16 2 N -0.38 -3.65 4.01 -68.16 -0.27 -3.92 16 3 C 0.06 0.58 11.40 -17.23 -0.20 0.38 16 4 C -0.24 -2.56 4.84 -105.05 -0.51 -3.06 16 5 C 0.25 2.96 2.80 -69.08 -0.19 2.76 16 6 H 0.10 1.28 7.57 -51.93 -0.39 0.89 16 7 C 0.07 0.75 6.84 37.16 0.25 1.00 16 8 O -0.56 -5.80 12.53 -35.23 -0.44 -6.24 16 9 N -0.74 -10.00 5.01 -59.81 -0.30 -10.30 16 10 C 0.70 12.44 8.53 -86.92 -0.74 11.70 16 11 O -0.60 -12.75 16.01 5.29 0.08 -12.66 16 12 N -0.74 -13.45 5.56 -65.23 -0.36 -13.82 16 13 C 0.14 3.09 5.61 -4.04 -0.02 3.06 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.66 5.46 -17.81 -0.10 1.56 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.08 0.92 10.50 -17.37 -0.18 0.73 16 24 N -0.30 -3.69 12.58 30.62 0.39 -3.31 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.37 2.43 9.12 45.56 0.42 2.84 16 32 H 0.40 4.70 7.65 -40.82 -0.31 4.39 16 33 H 0.39 6.29 8.49 -40.82 -0.35 5.94 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.18 1.87 7.72 -52.49 -0.41 1.47 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -35.81 339.41 -6.34 -42.15 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.81 Total: 7.52 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.46 Total: 4.61 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.19 Total: -57.06 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.36 Total: -18.90 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.81 -6.34 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320191723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.349 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds