Wall clock time and date at job start Tue Mar 31 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03991 * 2 1 4 4 C 1.35316 * 107.74613 * 179.75096 * 3 2 1 5 5 C 1.50706 * 126.04256 * 180.27593 * 4 3 2 6 6 H 1.09001 * 109.46637 * 340.16333 * 5 4 3 7 7 C 1.52997 * 109.47097 * 100.16476 * 5 4 3 8 8 O 1.42899 * 109.47255 * 55.00145 * 7 5 4 9 9 N 1.46499 * 109.47155 * 220.16598 * 5 4 3 10 10 C 1.34776 * 119.99923 * 154.99718 * 9 5 4 11 11 O 1.21581 * 119.99981 * 359.97438 * 10 9 5 12 12 N 1.34777 * 119.99780 * 179.97438 * 10 9 5 13 13 C 1.46497 * 120.00063 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47450 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.46991 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00567 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99652 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99839 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47276 * 59.99723 * 19 17 15 21 21 H 1.48505 * 109.47136 * 180.02562 * 19 17 15 22 22 H 1.48513 * 109.46872 * 299.99674 * 19 17 15 23 23 C 1.39870 * 107.92161 * 0.39436 * 4 3 2 24 24 N 1.30836 * 108.20019 * 359.59732 * 23 4 3 25 25 H 1.09002 * 109.47159 * 269.97891 * 1 2 3 26 26 H 1.08999 * 109.46542 * 29.97403 * 1 2 3 27 27 H 1.08999 * 109.47324 * 149.97201 * 1 2 3 28 28 H 1.08002 * 126.12737 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47090 * 175.00483 * 7 5 4 30 30 H 1.09000 * 109.46899 * 295.00036 * 7 5 4 31 31 H 0.96702 * 113.99336 * 180.02562 * 8 7 5 32 32 H 0.97009 * 119.99832 * 334.99651 * 9 5 4 33 33 H 0.97001 * 120.00302 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.47162 * 299.99935 * 13 12 10 35 35 H 1.09005 * 109.47340 * 59.99476 * 13 12 10 36 36 H 1.09003 * 109.46522 * 300.00038 * 14 13 12 37 37 H 1.08998 * 109.47036 * 59.99137 * 14 13 12 38 38 H 0.96998 * 119.99375 * 180.02562 * 18 17 15 39 39 H 1.08002 * 125.90382 * 179.86983 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5451 0.0135 6 1 4.5013 2.5430 -0.3345 7 6 5.3237 1.6327 1.4363 8 8 5.5644 0.3156 1.9357 9 7 5.7847 0.9741 -0.8734 10 6 6.7207 1.7706 -1.4265 11 8 6.7211 2.9631 -1.1896 12 7 7.6563 1.2452 -2.2420 13 6 8.6740 2.1109 -2.8427 14 6 9.6064 1.2707 -3.7178 15 6 10.6529 2.1613 -4.3362 16 1 10.6528 3.2208 -4.1265 17 6 11.6106 1.6236 -5.1698 18 7 11.6110 0.3334 -5.4248 19 14 12.9083 2.7275 -5.9358 20 1 13.6956 3.3849 -4.8619 21 1 13.8132 1.9120 -6.7852 22 1 12.2473 3.7634 -6.7699 23 6 3.5347 -0.7322 0.0000 24 7 2.2891 -1.1328 0.0001 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3632 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5143 28 1 1.9282 2.1193 -0.0004 29 1 6.2578 2.1944 1.4277 30 1 4.6018 2.1383 2.0778 31 1 5.9179 0.2948 2.8356 32 1 5.7841 0.0226 -1.0626 33 1 7.6562 0.2937 -2.4307 34 1 8.1890 2.8717 -3.4542 35 1 9.2524 2.5928 -2.0545 36 1 10.0915 0.5101 -3.1058 37 1 9.0283 0.7884 -4.5060 38 1 12.2850 -0.0448 -6.0109 39 1 4.4054 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320191723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:47 Heat of formation + Delta-G solvation = -34.281408 kcal Electronic energy + Delta-G solvation = -21544.781017 eV Core-core repulsion = 18102.086910 eV Total energy + Delta-G solvation = -3442.694106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23293 -40.89740 -38.10296 -36.55319 -35.61198 -34.77752 -33.87769 -32.23830 -31.01205 -29.16303 -27.29474 -26.60344 -23.95896 -22.86450 -22.35565 -21.54461 -20.90152 -19.43784 -18.42457 -18.17330 -17.96263 -16.86019 -16.62469 -16.47429 -16.27766 -15.75261 -15.40836 -15.17320 -15.11165 -14.69328 -14.32675 -14.23289 -14.01701 -13.53539 -13.26965 -13.21372 -13.15681 -12.89500 -12.55239 -12.50904 -12.18556 -11.65294 -11.52648 -11.47101 -11.19772 -10.82054 -10.57658 -10.34422 -10.26718 -9.68750 -9.34111 -8.21524 -6.31912 0.94848 1.43342 1.46201 1.53815 1.63150 1.74493 2.01658 2.25339 2.43784 3.13160 3.43479 3.48883 3.62863 4.03328 4.17114 4.28813 4.39691 4.47694 4.50704 4.55371 4.57241 4.63082 4.73019 4.79107 4.90661 4.93966 5.08491 5.36091 5.55228 5.62850 5.62907 5.66824 5.82360 6.10957 6.15541 6.20178 6.75114 6.81527 6.96096 7.17819 7.37304 7.66348 8.90337 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.002808 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.485609 B = 9968.859665 C =10225.621578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.074 3.926 4 C -0.252 4.252 5 C 0.248 3.752 6 H 0.097 0.903 7 C 0.076 3.924 8 O -0.575 6.575 9 N -0.721 5.721 10 C 0.701 3.299 11 O -0.637 6.637 12 N -0.736 5.736 13 C 0.162 3.838 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.928 5.928 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.070 3.930 24 N -0.337 5.337 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.209 0.791 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.390 0.610 32 H 0.405 0.595 33 H 0.405 0.595 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.526 -0.385 14.699 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.074 4.074 4 C -0.265 4.265 5 C 0.142 3.858 6 H 0.114 0.886 7 C -0.004 4.004 8 O -0.382 6.382 9 N -0.376 5.376 10 C 0.401 3.599 11 O -0.519 6.519 12 N -0.390 5.390 13 C 0.038 3.962 14 C -0.014 4.014 15 C -0.584 4.584 16 H 0.079 0.921 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.193 1.193 23 C -0.115 4.115 24 N -0.159 5.159 25 H 0.106 0.894 26 H 0.133 0.867 27 H 0.106 0.894 28 H 0.226 0.774 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.240 0.760 33 H 0.239 0.761 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -23.644 -0.620 14.224 27.600 hybrid contribution 1.682 0.238 -0.123 1.703 sum -21.963 -0.382 14.101 26.102 Atomic orbital electron populations 1.22195 0.71936 1.05893 1.04643 1.48792 1.07940 1.03285 1.56038 1.22775 0.90002 0.94812 0.99843 1.19858 0.93892 0.93873 1.18845 1.18967 0.83329 0.95908 0.87609 0.88562 1.22510 0.98880 0.84517 0.94461 1.86440 1.87836 1.27531 1.36345 1.44977 1.30565 1.11117 1.50950 1.16105 0.79931 0.84980 0.78895 1.90839 1.77525 1.15502 1.68043 1.45243 1.31088 1.12332 1.50364 1.21050 0.87655 0.92543 0.94963 1.19126 0.93373 0.95077 0.93830 1.21451 1.13149 0.95086 1.28754 0.92148 1.25896 1.00049 0.96540 0.96813 1.70064 1.36239 1.12803 1.37654 0.85486 0.78444 0.78552 0.78486 1.19257 1.20680 1.19283 1.23736 0.94976 0.94861 0.97962 1.77330 1.02292 1.09787 1.26468 0.89437 0.86698 0.89408 0.77428 0.94922 0.91102 0.76113 0.75970 0.76052 0.93759 0.93779 0.97447 0.97484 0.92582 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.47 127.77 1.47 2.19 16 2 N -0.38 -6.49 4.01 -369.56 -1.48 -7.97 16 3 C 0.07 1.17 11.40 83.54 0.95 2.12 16 4 C -0.25 -5.11 4.84 -20.14 -0.10 -5.20 16 5 C 0.25 5.62 2.80 44.25 0.12 5.75 16 6 H 0.10 2.31 7.57 -2.39 -0.02 2.29 16 7 C 0.08 1.55 6.84 71.98 0.49 2.04 16 8 O -0.57 -11.11 12.53 -148.98 -1.87 -12.98 16 9 N -0.72 -19.14 5.01 -461.42 -2.31 -21.45 16 10 C 0.70 24.80 8.53 179.05 1.53 26.33 16 11 O -0.64 -26.94 16.01 -3.97 -0.06 -27.01 16 12 N -0.74 -26.92 5.56 -478.54 -2.66 -29.58 16 13 C 0.16 7.20 5.61 86.38 0.48 7.68 16 14 C 0.02 1.21 5.09 29.85 0.15 1.36 16 15 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.01 0.32 5.46 84.66 0.46 0.78 16 18 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 19 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 C 0.07 1.57 10.50 85.24 0.89 2.46 16 24 N -0.34 -7.92 12.58 -57.02 -0.72 -8.64 16 25 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.39 4.54 9.12 -74.06 -0.68 3.86 16 32 H 0.40 9.37 7.65 -92.70 -0.71 8.66 16 33 H 0.40 12.94 8.49 -92.71 -0.79 12.15 16 34 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.18 3.74 7.72 -2.91 -0.02 3.71 16 Total: -1.00 -76.70 339.41 -1.18 -77.88 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -1.08 Total: 23.78 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.69 Total: 14.84 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -6.89 Total: -122.54 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.93 Total: -39.98 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -76.70 -1.18 -77.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320191723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.599 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds