Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.46503 * 120.00249 * 60.00308 * 12 2 1 14 14 C 1.34779 * 119.99876 * 240.00324 * 12 2 1 15 15 O 1.21275 * 120.00050 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99897 * 180.02562 * 14 12 2 17 17 O 1.42898 * 109.46980 * 179.97438 * 16 14 12 18 18 C 1.42897 * 114.00168 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47504 * 180.02562 * 18 17 16 20 20 N 1.30517 * 126.34289 * 90.02524 * 19 18 17 21 21 N 1.28600 * 109.67211 * 179.97438 * 20 19 18 22 22 C 1.30526 * 109.67346 * 0.02562 * 21 20 19 23 23 N 1.35492 * 126.34642 * 269.71515 * 19 18 17 24 24 C 1.46499 * 126.97969 * 0.03280 * 23 19 18 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46807 * 89.99603 * 13 12 2 30 30 H 1.08998 * 109.47196 * 209.99887 * 13 12 2 31 31 H 1.09000 * 109.46808 * 330.00267 * 13 12 2 32 32 H 1.08992 * 109.46945 * 299.99747 * 16 14 12 33 33 H 1.09003 * 109.47186 * 60.00197 * 16 14 12 34 34 H 1.08998 * 109.47248 * 300.00568 * 18 17 16 35 35 H 1.09004 * 109.46808 * 60.00009 * 18 17 16 36 36 H 1.07995 * 126.34653 * 179.97438 * 22 21 20 37 37 H 1.09006 * 109.46898 * 89.99944 * 24 23 19 38 38 H 1.08994 * 109.47266 * 210.00028 * 24 23 19 39 39 H 1.08994 * 109.47319 * 330.00158 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0356 2.0834 15 8 3.0865 1.1253 1.8913 16 6 3.2959 -0.7463 3.3135 17 8 4.0901 0.1517 4.0912 18 6 4.6182 -0.4257 5.2869 19 6 5.4339 0.6045 6.0246 20 7 4.9942 1.4363 6.9292 21 7 5.9624 2.1717 7.3482 22 6 7.0637 1.8428 6.7294 23 7 6.7608 0.8349 5.8760 24 6 7.6805 0.1384 4.9731 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4843 29 1 2.4158 -2.7377 0.9715 30 1 1.6239 -2.2854 2.5001 31 1 0.6905 -2.3003 0.9844 32 1 2.4484 -1.0892 3.9068 33 1 3.9018 -1.6024 3.0165 34 1 3.7978 -0.7614 5.9212 35 1 5.2509 -1.2757 5.0311 36 1 8.0367 2.2885 6.8741 37 1 7.7066 0.6535 4.0128 38 1 8.6798 0.1297 5.4081 39 1 7.3392 -0.8863 4.8265 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324505587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = 14.701524 kcal Electronic energy + Delta-G solvation = -21989.813337 eV Core-core repulsion = 18549.243290 eV Total energy + Delta-G solvation = -3440.570047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.27820 -39.32712 -37.60584 -35.33518 -35.21453 -32.93301 -31.79456 -29.91280 -28.15561 -27.68139 -26.28632 -25.94697 -25.20996 -22.57812 -21.27408 -21.14185 -18.53399 -17.54345 -17.17302 -16.69753 -16.38436 -16.24766 -15.82277 -15.28489 -15.22971 -14.75138 -14.23898 -14.11795 -13.70287 -13.32258 -12.87543 -12.73299 -12.63133 -12.09693 -11.93971 -11.68246 -11.57335 -11.50260 -11.08628 -10.85174 -10.72809 -10.55612 -10.41059 -10.28877 -10.18959 -9.87607 -9.52873 -9.21361 -8.93581 -8.44888 -7.64971 -6.09377 -4.18012 1.46887 2.22466 2.63490 3.25059 3.26223 3.31158 3.32628 3.35602 3.97112 4.24014 4.33613 4.35449 4.49962 4.57446 4.71229 4.91013 5.03682 5.09123 5.14905 5.22298 5.26123 5.34496 5.62872 5.64383 5.89857 5.98176 6.21871 6.56794 6.71177 6.78198 6.87167 7.03533 7.40340 7.49023 7.68298 7.99251 8.16174 8.46210 8.54948 8.80150 9.00053 9.48408 10.95952 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027869 B = 0.003338 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.471442 B = 8386.758277 C = 8672.572079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.084 3.916 14 C 0.504 3.496 15 O -0.530 6.530 16 C 0.046 3.954 17 O -0.355 6.355 18 C 0.148 3.852 19 C 0.179 3.821 20 N -0.272 5.272 21 N -0.297 5.297 22 C 0.153 3.847 23 N -0.468 5.468 24 C 0.071 3.929 25 H 0.031 0.969 26 H 0.013 0.987 27 H 0.094 0.906 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.221 0.779 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.042 -8.376 14.307 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.326 5.326 13 C -0.060 4.060 14 C 0.289 3.711 15 O -0.407 6.407 16 C -0.034 4.034 17 O -0.272 6.272 18 C 0.069 3.931 19 C -0.088 4.088 20 N -0.115 5.115 21 N -0.137 5.137 22 C -0.135 4.135 23 N -0.159 5.159 24 C -0.072 4.072 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.201 -6.740 14.888 19.265 hybrid contribution 1.313 -1.503 -1.765 2.665 sum 11.514 -8.243 13.123 19.306 Atomic orbital electron populations 1.22103 0.98098 0.99405 1.01012 1.18960 0.90919 0.94551 0.79611 0.91839 1.21266 1.32038 1.13046 0.90274 0.92328 1.24901 0.94943 0.94977 0.98975 1.69869 1.36198 1.22496 1.23936 0.86537 0.79188 0.79544 0.81994 1.20225 1.21143 1.20285 1.48205 1.49086 1.11733 1.23549 1.21601 1.02026 0.83167 0.99201 1.19901 0.79969 0.87340 0.83884 1.90697 1.57188 1.16739 1.76072 1.22423 0.95409 0.92690 0.92838 1.88115 1.68344 1.37179 1.33534 1.20483 0.95884 0.90041 0.86714 1.24316 0.82304 1.01995 1.00215 1.74271 1.22474 1.04100 1.10645 1.74283 0.96157 1.20593 1.22708 1.26476 1.02295 0.91543 0.93148 1.46184 1.09380 1.28489 1.31892 1.22181 0.92839 0.98304 0.93905 0.95038 0.96828 0.88721 0.92561 0.93140 0.93071 0.90527 0.90284 0.90528 0.89304 0.91284 0.76307 0.89206 0.88808 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.95 37.16 0.33 -3.18 16 2 C 0.26 6.60 2.63 -69.08 -0.18 6.42 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.08 8.37 -34.44 -0.29 -14.37 16 5 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.59 -12.35 2.75 -175.26 -0.48 -12.83 16 13 C 0.08 1.30 9.48 59.85 0.57 1.86 16 14 C 0.50 10.50 7.75 -10.98 -0.09 10.41 16 15 O -0.53 -13.82 15.83 -14.35 -0.23 -14.05 16 16 C 0.05 0.66 4.97 36.01 0.18 0.84 16 17 O -0.35 -5.64 9.86 -55.14 -0.54 -6.19 16 18 C 0.15 1.65 6.29 36.01 0.23 1.87 16 19 C 0.18 2.38 7.66 -154.99 -1.19 1.19 16 20 N -0.27 -4.44 12.21 32.79 0.40 -4.04 16 21 N -0.30 -4.47 12.21 29.69 0.36 -4.10 16 22 C 0.15 1.60 12.74 -89.94 -1.15 0.45 16 23 N -0.47 -4.80 3.15 -122.69 -0.39 -5.18 16 24 C 0.07 0.39 11.04 59.85 0.66 1.05 16 25 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 31 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 32 H 0.08 0.91 7.40 -51.93 -0.38 0.52 16 33 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.51 7.21 -51.93 -0.37 0.13 16 36 H 0.22 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.39 7.19 -51.93 -0.37 0.01 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -37.78 330.52 -6.62 -44.40 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.31 Total: -2.51 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.02 Total: 8.22 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.52 Total: -50.57 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.77 Total: -20.23 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.78 -6.62 -44.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324505587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.101 kcal (2) G-P(sol) polarization free energy of solvation -37.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds