Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99623 * 2 1 4 4 H 1.48499 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47000 * 300.00114 * 3 2 1 6 6 H 1.48504 * 109.47383 * 59.99927 * 3 2 1 7 7 C 1.37874 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99919 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00038 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99730 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46850 * 179.97438 * 11 10 9 13 13 O 1.45193 * 109.47298 * 65.00141 * 12 11 10 14 14 C 1.34230 * 117.00428 * 179.97438 * 13 12 11 15 15 O 1.20829 * 119.99408 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00567 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47360 * 178.61589 * 16 14 13 18 18 C 1.52997 * 109.47507 * 66.33069 * 17 16 14 19 19 C 1.53004 * 117.49440 * 248.74916 * 18 17 16 20 20 C 1.52999 * 117.49816 * 180.08921 * 18 17 16 21 21 C 1.53001 * 109.46999 * 186.33075 * 17 16 14 22 22 C 1.52999 * 117.49869 * 134.80549 * 21 17 16 23 23 C 1.53005 * 117.50007 * 66.14594 * 21 17 16 24 24 H 0.97002 * 120.00804 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47056 * 59.99361 * 9 7 2 26 26 H 1.09004 * 109.46276 * 299.99472 * 9 7 2 27 27 H 1.09005 * 109.46897 * 60.00090 * 11 10 9 28 28 H 1.08997 * 109.47031 * 299.99866 * 11 10 9 29 29 H 1.09006 * 109.47622 * 305.00035 * 12 11 10 30 30 H 1.09004 * 109.47089 * 185.00559 * 12 11 10 31 31 H 1.09003 * 109.46604 * 298.61155 * 16 14 13 32 32 H 1.09005 * 109.47366 * 58.60598 * 16 14 13 33 33 H 1.09005 * 109.46921 * 306.32674 * 17 16 14 34 34 H 1.08995 * 115.55173 * 34.41403 * 18 17 16 35 35 H 1.08998 * 117.49753 * 359.97438 * 19 18 17 36 36 H 1.09003 * 117.49542 * 145.02218 * 19 18 17 37 37 H 1.09002 * 117.49678 * 214.97785 * 20 18 17 38 38 H 1.08997 * 117.49971 * 359.97192 * 20 18 17 39 39 H 1.09001 * 115.55214 * 280.47702 * 21 17 16 40 40 H 1.09001 * 117.50371 * 0.02562 * 22 21 17 41 41 H 1.09003 * 117.49531 * 145.01729 * 22 21 17 42 42 H 1.09000 * 117.49701 * 214.97444 * 23 21 17 43 43 H 1.08993 * 117.49866 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5654 -4.8753 0.0011 12 6 2.6484 -5.9560 0.0004 13 8 3.4006 -5.8883 1.2405 14 6 4.3948 -6.7759 1.3995 15 8 4.6292 -7.5825 0.5309 16 6 5.2188 -6.7665 2.6612 17 6 6.2535 -7.8920 2.6031 18 6 7.2639 -7.5992 1.4921 19 6 7.2418 -8.5063 0.2602 20 6 8.3858 -8.6158 1.2715 21 6 6.9832 -7.9838 3.9447 22 6 7.1837 -9.3763 4.5460 23 6 6.1667 -8.4142 5.1650 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6243 -2.5566 0.8904 27 1 0.9449 -4.9826 -0.8887 28 1 0.9456 -4.9821 0.8913 29 1 3.3214 -5.7955 -0.8419 30 1 2.1824 -6.9374 -0.0888 31 1 5.7295 -5.8080 2.7544 32 1 4.5670 -6.9161 3.5220 33 1 5.7510 -8.8372 2.3974 34 1 7.5010 -6.5466 1.3378 35 1 6.5079 -9.3119 0.2415 36 1 7.4650 -8.0505 -0.7045 37 1 9.3609 -8.2320 0.9718 38 1 8.4043 -9.4930 1.9182 39 1 7.7733 -7.2494 4.1014 40 1 6.7962 -10.2271 3.9857 41 1 8.1056 -9.5579 5.0986 42 1 6.4199 -7.9633 6.1245 43 1 5.1097 -8.6315 5.0121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324940589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = -99.467852 kcal Electronic energy + Delta-G solvation = -21845.969477 eV Core-core repulsion = 18471.696266 eV Total energy + Delta-G solvation = -3374.273210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46479 -38.83491 -36.98831 -36.29683 -35.84035 -32.78250 -32.19543 -30.03250 -27.01414 -25.98364 -22.84445 -22.46538 -22.40664 -22.10545 -21.54145 -20.80389 -19.79209 -17.54523 -16.63072 -16.55088 -16.21849 -15.90031 -15.43556 -15.20464 -14.72681 -14.46876 -14.27864 -14.14169 -13.45603 -13.08936 -12.75787 -12.42842 -12.30590 -11.89675 -11.82571 -11.68384 -11.51282 -11.40843 -11.31487 -10.89770 -10.87420 -10.72569 -10.58598 -10.49074 -10.31997 -10.21160 -10.11370 -10.02610 -9.78975 -9.11604 -8.87949 -8.21487 -6.12416 -4.14008 2.40226 2.84447 3.28695 3.35121 3.41834 3.53257 3.78945 4.30195 4.32599 4.53662 4.60121 4.73437 4.76490 4.86024 4.98141 5.00965 5.10689 5.17169 5.24267 5.26829 5.32903 5.38054 5.49185 5.50940 5.55216 5.62936 5.65708 5.77300 5.85310 5.88830 5.95579 5.97050 6.01230 6.12455 6.15289 6.26093 6.71637 7.05489 7.39680 7.78046 7.97595 8.12404 8.52666 8.99071 9.50880 10.99231 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020858 B = 0.002942 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.076203 B = 9516.163718 C = 9757.004663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.344 6.344 14 C 0.457 3.543 15 O -0.508 6.508 16 C -0.108 4.108 17 C -0.013 4.013 18 C -0.144 4.144 19 C -0.152 4.152 20 C -0.184 4.184 21 C -0.141 4.141 22 C -0.177 4.177 23 C -0.183 4.183 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.595 -19.041 7.280 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.260 6.260 14 C 0.300 3.700 15 O -0.397 6.397 16 C -0.145 4.145 17 C -0.031 4.031 18 C -0.162 4.162 19 C -0.189 4.189 20 C -0.221 4.221 21 C -0.160 4.160 22 C -0.214 4.214 23 C -0.220 4.220 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.675 -19.109 6.991 23.972 hybrid contribution -0.079 0.895 -0.159 0.913 sum 12.596 -18.213 6.832 23.175 Atomic orbital electron populations 1.69966 1.06111 1.27096 1.50651 1.24952 0.94988 0.99469 0.95127 0.86276 0.80041 0.82526 0.77631 1.19453 1.20837 1.20801 1.21092 0.94137 0.89291 1.50691 0.91458 1.20241 0.88762 0.83544 0.95487 1.87917 1.35302 1.12621 1.95215 1.22322 0.93343 0.85512 1.00450 1.23155 0.93613 0.98544 0.84487 1.86602 1.43602 1.54408 1.41402 1.23658 0.79081 0.78103 0.89127 1.90638 1.67448 1.38114 1.43454 1.21410 0.96925 1.02169 0.94019 1.20151 0.93168 0.97960 0.91846 1.22142 0.99386 0.96688 0.97985 1.22835 1.00106 1.02281 0.93639 1.22966 0.93834 1.01484 1.03841 1.22228 1.02217 0.98619 0.92893 1.22990 1.01024 0.93368 1.04052 1.23000 0.97514 1.04125 0.97318 0.92681 0.97635 0.97496 0.92083 0.93271 0.90632 0.90629 0.87393 0.87732 0.90223 0.88180 0.88682 0.89427 0.89349 0.89018 0.87413 0.88950 0.88891 0.88662 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -15.24 9.43 -34.44 -0.32 -15.57 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.19 5.34 5.69 36.01 0.20 5.55 16 10 O -0.39 -9.58 10.30 -38.80 -0.40 -9.98 16 11 C 0.06 1.14 6.33 37.16 0.24 1.37 16 12 C 0.08 1.22 5.84 37.16 0.22 1.43 16 13 O -0.34 -5.75 10.19 -42.03 -0.43 -6.18 16 14 C 0.46 6.52 7.73 36.00 0.28 6.80 16 15 O -0.51 -7.85 13.28 -18.75 -0.25 -8.10 16 16 C -0.11 -1.14 5.22 -27.89 -0.15 -1.28 16 17 C -0.01 -0.12 1.76 -90.62 -0.16 -0.28 16 18 C -0.14 -1.49 4.33 -90.62 -0.39 -1.88 16 19 C -0.15 -1.66 8.62 -26.69 -0.23 -1.89 16 20 C -0.18 -1.67 9.88 -26.69 -0.26 -1.94 16 21 C -0.14 -1.11 4.72 -90.62 -0.43 -1.54 16 22 C -0.18 -1.25 10.18 -26.69 -0.27 -1.52 16 23 C -0.18 -1.31 9.75 -26.69 -0.26 -1.57 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.95 7.54 -51.93 -0.39 0.55 16 33 H 0.08 0.83 7.50 -51.93 -0.39 0.44 16 34 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.68 7.98 -51.93 -0.41 0.26 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -32.31 361.85 -9.03 -41.33 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.48 Total: -2.41 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.64 Total: -10.79 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.08 Total: -24.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.31 -9.03 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324940589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.133 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds