Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.50702 * 109.47460 * 119.99954 * 2 1 3 5 5 N 1.29021 * 124.91940 * 119.99549 * 4 2 1 6 6 C 1.31777 * 117.12784 * 180.02562 * 5 4 2 7 7 C 1.50698 * 122.75191 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.47194 * 275.00123 * 7 6 5 9 9 C 1.46902 * 110.99800 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46626 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47127 * 299.99665 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99828 * 10 9 8 13 13 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 10 9 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 10 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47183 * 60.00274 * 17 15 13 19 19 H 1.48496 * 109.47425 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47216 * 300.00267 * 17 15 13 21 21 C 1.33640 * 114.50320 * 0.23707 * 6 5 4 22 22 S 1.70985 * 124.91312 * 300.00218 * 4 2 1 23 23 H 1.09006 * 109.46555 * 299.99755 * 1 2 3 24 24 H 1.08992 * 109.47214 * 60.00141 * 1 2 3 25 25 H 1.08999 * 109.46963 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47375 * 240.00041 * 2 1 3 27 27 H 1.08999 * 109.46919 * 59.99762 * 3 2 1 28 28 H 1.08993 * 109.47219 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46955 * 300.00465 * 3 2 1 30 30 H 1.09002 * 109.47213 * 155.00061 * 7 6 5 31 31 H 1.09001 * 109.47086 * 34.99817 * 7 6 5 32 32 H 1.00904 * 110.99696 * 56.04431 * 8 7 6 33 33 H 1.08993 * 109.47737 * 60.00169 * 9 8 7 34 34 H 1.09000 * 109.47263 * 299.99731 * 9 8 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 36 36 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 37 37 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 38 38 H 1.09000 * 109.47140 * 60.00051 * 12 10 9 39 39 H 1.09001 * 109.47230 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.47375 * 300.00034 * 12 10 9 41 41 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 42 42 H 1.07990 * 126.04429 * 179.76850 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2305 5 7 2.7773 -1.7638 1.2227 6 6 3.1279 -2.2605 2.3918 7 6 3.9938 -3.4861 2.5304 8 7 3.1546 -4.6895 2.4550 9 6 3.9666 -5.9066 2.5873 10 6 3.0598 -7.1362 2.5034 11 6 2.0277 -7.0866 3.6317 12 6 2.3397 -7.1476 1.1536 13 6 3.8928 -8.3847 2.6385 14 1 4.9621 -8.3088 2.7705 15 6 3.2900 -9.6239 2.5936 16 7 1.9880 -9.7163 2.4323 17 14 4.3226 -11.1715 2.7603 18 1 5.0229 -11.1607 4.0697 19 1 3.4426 -12.3649 2.6790 20 1 5.3233 -11.2195 1.6641 21 6 2.6483 -1.5915 3.4446 22 16 1.6977 -0.2370 2.8390 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 4.5077 -3.4611 3.4914 31 1 4.7287 -3.5047 1.7257 32 1 2.6182 -4.7034 1.6005 33 1 4.4800 -5.8983 3.5488 34 1 4.7017 -5.9422 1.7833 35 1 1.4253 -6.1835 3.5336 36 1 1.3820 -7.9627 3.5722 37 1 2.5408 -7.0784 4.5933 38 1 3.0751 -7.1830 0.3498 39 1 1.6941 -8.0238 1.0936 40 1 1.7373 -6.2445 1.0554 41 1 1.5639 -10.5880 2.4011 42 1 2.8155 -1.8363 4.4830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325021143.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = 25.924969 kcal Electronic energy + Delta-G solvation = -19912.844413 eV Core-core repulsion = 17019.054266 eV Total energy + Delta-G solvation = -2893.790148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94328 -36.91534 -35.82384 -33.74019 -31.16940 -29.64273 -27.48956 -26.34831 -25.51936 -25.17568 -24.67742 -22.91810 -20.91627 -19.75471 -18.40736 -17.45563 -16.04900 -15.78013 -15.20168 -14.90930 -14.58099 -14.36845 -14.01080 -13.78986 -13.23880 -13.04863 -12.70050 -12.52110 -12.32108 -12.24905 -11.92615 -11.60754 -11.49300 -11.43576 -11.18472 -11.02006 -10.94873 -10.62826 -10.55751 -10.14158 -10.03852 -9.61761 -9.36547 -9.34994 -9.09842 -8.70960 -8.58179 -8.26058 -7.68806 -5.88380 -3.98955 0.75556 1.37985 1.76211 2.83506 3.34602 3.39268 3.41891 3.89713 4.46406 4.59064 4.78925 4.81654 5.08125 5.23814 5.28409 5.29298 5.36839 5.38836 5.48138 5.53757 5.68087 5.78687 5.89111 5.93329 6.00498 6.23499 6.34644 6.43557 6.75188 6.92850 7.11408 7.20900 7.41101 7.49462 7.73580 7.78950 7.81203 7.85472 7.99230 8.24197 8.37306 8.58546 9.02320 9.65809 11.12169 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.003232 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.929163 B = 8660.461444 C = 8876.067574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.020 4.020 3 C -0.146 4.146 4 C 0.055 3.945 5 N -0.467 5.467 6 C 0.079 3.921 7 C 0.131 3.869 8 N -0.681 5.681 9 C 0.075 3.925 10 C 0.070 3.930 11 C -0.119 4.119 12 C -0.132 4.132 13 C -0.507 4.507 14 H 0.052 0.948 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C -0.239 4.239 22 S 0.100 5.900 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.342 0.658 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.019 0.981 36 H 0.074 0.926 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.258 0.742 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 21.582 -2.077 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.042 4.042 3 C -0.204 4.204 4 C -0.224 4.224 5 N -0.181 5.181 6 C -0.052 4.052 7 C -0.001 4.001 8 N -0.313 5.313 9 C -0.053 4.053 10 C 0.069 3.931 11 C -0.176 4.176 12 C -0.190 4.190 13 C -0.546 4.546 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.205 1.205 21 C -0.378 4.378 22 S 0.354 5.646 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.161 0.839 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.093 0.907 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.102 0.898 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.645 22.021 -1.459 22.228 hybrid contribution 1.591 -1.748 -0.573 2.432 sum -1.054 20.274 -2.033 20.403 Atomic orbital electron populations 1.21925 0.93160 1.02963 1.02502 1.19809 0.96128 0.95260 0.93049 1.21915 1.01714 0.94228 1.02553 1.27010 1.00051 0.96682 0.98647 1.66093 1.13106 1.09994 1.28877 1.20285 1.00371 0.98498 0.86086 1.20432 0.92413 0.86014 1.01289 1.60676 1.26241 1.00724 1.43677 1.22187 0.95062 0.89262 0.98795 1.18080 0.92328 0.89986 0.92682 1.21636 0.99270 0.99862 0.96871 1.21828 0.99537 1.00053 0.97545 1.21079 0.93441 0.90509 1.49591 0.93012 1.24886 0.94860 0.98695 0.95126 1.69829 1.08589 1.23759 1.50197 0.86713 0.80186 0.82818 0.78544 1.20402 1.21374 1.20465 1.26820 1.06163 1.00186 1.04653 1.83720 1.49633 1.29032 1.02195 0.92246 0.91265 0.91768 0.88166 0.92250 0.92088 0.91266 0.89915 0.94161 0.83851 0.92421 0.96681 0.96196 0.90741 0.96310 0.96190 0.89840 0.97116 0.93145 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.09 37.16 0.34 -0.84 16 2 C -0.02 -0.19 3.35 -91.77 -0.31 -0.50 16 3 C -0.15 -1.06 9.09 37.16 0.34 -0.72 16 4 C 0.05 0.68 6.03 -13.46 -0.08 0.60 16 5 N -0.47 -7.15 10.53 -8.06 -0.08 -7.24 16 6 C 0.08 1.20 6.25 -84.23 -0.53 0.67 16 7 C 0.13 2.10 6.12 -4.97 -0.03 2.07 16 8 N -0.68 -12.95 5.70 -115.05 -0.66 -13.61 16 9 C 0.08 1.61 4.59 -3.82 -0.02 1.60 16 10 C 0.07 1.73 0.57 -155.66 -0.09 1.64 16 11 C -0.12 -2.96 8.09 37.16 0.30 -2.66 16 12 C -0.13 -3.23 7.92 37.16 0.29 -2.94 16 13 C -0.51 -13.88 8.01 -34.44 -0.28 -14.16 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 15 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 16 N -0.88 -24.87 9.35 55.43 0.52 -24.36 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.24 -3.14 11.12 29.12 0.32 -2.82 16 22 S 0.10 1.10 22.53 -107.50 -2.42 -1.32 16 23 H 0.06 0.45 7.93 -51.93 -0.41 0.03 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.34 6.81 6.76 -39.29 -0.27 6.54 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 36 H 0.07 2.03 6.07 -51.93 -0.32 1.71 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 40 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -28.96 346.92 -9.33 -38.29 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.07 Total: 3.02 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 0.18 Total: -16.35 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.22 Total: -45.20 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.42 Total: -1.32 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.96 -9.33 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325021143.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.219 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds