Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99973 * 2 1 4 4 H 1.48509 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47220 * 300.00331 * 3 2 1 6 6 H 1.48502 * 109.46949 * 60.00634 * 3 2 1 7 7 C 1.37875 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.46280 * 180.02562 * 9 7 2 11 11 C 1.53185 * 109.31593 * 181.37415 * 10 9 7 12 12 N 1.46926 * 108.89162 * 305.29317 * 11 10 9 13 13 C 1.34775 * 120.63268 * 233.67366 * 12 11 10 14 14 S 1.71203 * 119.99900 * 354.92382 * 13 12 11 15 15 N 1.34779 * 120.00223 * 174.92976 * 13 12 11 16 16 C 1.46502 * 119.99811 * 185.07642 * 15 13 12 17 17 C 1.52993 * 109.46971 * 179.97438 * 16 15 13 18 18 C 1.53786 * 113.61528 * 274.13343 * 17 16 15 19 19 C 1.53957 * 87.02062 * 220.04938 * 18 17 16 20 20 C 1.53780 * 87.11193 * 25.36111 * 19 18 17 21 21 C 1.47208 * 118.55678 * 53.54269 * 12 11 10 22 22 C 1.53045 * 109.45179 * 300.06765 * 9 7 2 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.45748 * 60.03252 * 9 7 2 25 25 H 1.08999 * 109.49630 * 61.42146 * 10 9 7 26 26 H 1.08999 * 109.52297 * 301.34239 * 10 9 7 27 27 H 1.09002 * 109.58840 * 65.14473 * 11 10 9 28 28 H 1.08992 * 109.59195 * 185.43618 * 11 10 9 29 29 H 0.96990 * 119.99975 * 5.06935 * 15 13 12 30 30 H 1.09000 * 109.47226 * 299.99254 * 16 15 13 31 31 H 1.08996 * 109.47537 * 59.99661 * 16 15 13 32 32 H 1.09000 * 112.85395 * 45.33186 * 17 16 15 33 33 H 1.09002 * 113.60867 * 334.57188 * 18 17 16 34 34 H 1.09002 * 113.61222 * 105.47101 * 18 17 16 35 35 H 1.08997 * 113.53198 * 270.80754 * 19 18 17 36 36 H 1.08994 * 113.66364 * 139.93468 * 19 18 17 37 37 H 1.08999 * 113.61310 * 220.08762 * 20 19 18 38 38 H 1.08996 * 113.68978 * 89.19800 * 20 19 18 39 39 H 1.08998 * 109.53340 * 186.67650 * 21 12 11 40 40 H 1.09000 * 109.68314 * 66.36272 * 21 12 11 41 41 H 1.08997 * 109.49179 * 298.57279 * 22 9 7 42 42 H 1.09004 * 109.49187 * 58.66605 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2457 -3.6622 -0.0005 11 6 1.4767 -4.9866 -0.0352 12 7 0.5228 -5.0122 1.0820 13 6 0.5146 -6.0392 1.9546 14 16 1.5319 -7.3915 1.6947 15 7 -0.2945 -6.0018 3.0319 16 6 -0.2237 -7.0640 4.0383 17 6 -1.2387 -6.7834 5.1481 18 6 -0.7046 -5.8541 6.2509 19 6 -1.4320 -6.7635 7.2580 20 6 -1.3045 -7.8877 6.2164 21 6 -0.4201 -3.8912 1.2279 22 6 0.3705 -2.5793 1.2487 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5567 -0.8906 25 1 2.8557 -3.6192 0.9018 26 1 2.8886 -3.5917 -0.8779 27 1 0.9370 -5.0712 -0.9784 28 1 2.1754 -5.8175 0.0619 29 1 -0.9235 -5.2716 3.1408 30 1 -0.4510 -8.0225 3.5716 31 1 0.7794 -7.0957 4.4634 32 1 -2.2153 -6.4888 4.7641 33 1 0.3808 -5.8732 6.3501 34 1 -1.1086 -4.8429 6.2033 35 1 -2.4615 -6.4624 7.4517 36 1 -0.8649 -6.9473 8.1704 37 1 -2.1922 -8.5158 6.1411 38 1 -0.3841 -8.4647 6.3052 39 1 -0.9731 -3.9993 2.1610 40 1 -1.1162 -3.8854 0.3891 41 1 0.9985 -2.5466 2.1390 42 1 -0.3219 -1.7375 1.2602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325114256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = 23.678544 kcal Electronic energy + Delta-G solvation = -20345.817548 eV Core-core repulsion = 17451.929989 eV Total energy + Delta-G solvation = -2893.887560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83242 -38.94297 -36.32829 -33.83881 -31.52942 -30.62188 -28.64316 -26.38977 -25.86317 -23.97582 -23.35258 -22.35786 -21.44313 -19.79792 -19.12932 -17.89395 -16.98399 -16.38526 -15.88591 -15.12290 -14.86459 -14.63675 -14.41581 -14.19416 -13.80178 -13.27651 -12.97422 -12.76218 -12.70994 -12.31862 -12.22746 -11.81757 -11.54914 -11.21600 -11.01068 -10.88138 -10.82469 -10.70368 -10.63296 -10.53909 -10.43076 -10.23545 -9.76585 -9.31936 -9.10813 -8.54372 -8.43669 -7.41788 -7.07707 -6.15641 -4.21561 1.79229 2.27094 2.94829 3.20310 3.29399 3.33769 3.48888 4.30870 4.31997 4.36397 4.42681 4.58559 4.96819 5.08090 5.18425 5.21922 5.44045 5.49139 5.54815 5.59086 5.64328 5.65788 5.71599 5.78684 5.84144 5.92856 5.95845 6.04272 6.19107 6.28638 6.41195 6.53440 6.66051 6.83341 6.91651 7.07784 7.18288 7.50995 7.58110 7.74395 7.88329 8.26115 8.82339 9.44664 10.90202 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019373 B = 0.004191 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.959613 B = 6679.037090 C = 7689.118953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.122 4.122 11 C 0.101 3.899 12 N -0.549 5.549 13 C 0.570 3.430 14 S -0.690 6.690 15 N -0.693 5.693 16 C 0.138 3.862 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.127 4.127 21 C 0.092 3.908 22 C -0.122 4.122 23 H 0.261 0.739 24 H 0.030 0.970 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -9.857 10.416 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.028 3.972 10 C -0.160 4.160 11 C -0.021 4.021 12 N -0.256 5.256 13 C 0.208 3.792 14 S -0.563 6.563 15 N -0.326 5.326 16 C 0.015 3.985 17 C -0.148 4.148 18 C -0.177 4.177 19 C -0.180 4.180 20 C -0.165 4.165 21 C -0.032 4.032 22 C -0.161 4.161 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.235 0.765 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.512 -10.560 10.254 15.718 hybrid contribution -0.546 2.121 0.194 2.199 sum -6.058 -8.439 10.448 14.734 Atomic orbital electron populations 1.69820 1.05911 1.26531 1.51005 1.24965 0.94891 0.99205 0.94901 0.86531 0.80266 0.83607 0.77616 1.19709 1.20956 1.21047 1.21227 0.93121 0.90347 1.50219 0.92418 1.18680 0.92697 0.92182 0.93639 1.22025 0.98892 0.93447 1.01666 1.22391 0.91911 1.01811 0.86022 1.47626 1.34333 1.17344 1.26262 1.22082 0.86081 0.89426 0.81582 1.93162 1.50176 1.24923 1.88006 1.45075 1.38776 1.27885 1.20887 1.21659 0.99940 0.90242 0.86702 1.22881 0.99209 0.98688 0.94015 1.23066 1.00849 0.98167 0.95571 1.22833 1.00856 0.96900 0.97383 1.22839 1.02714 0.96065 0.94871 1.22376 0.92118 0.88027 1.00666 1.22068 1.00159 0.93621 1.00216 0.92946 0.95230 0.92663 0.91279 0.91212 0.86762 0.76453 0.89724 0.89981 0.88815 0.89643 0.91367 0.90233 0.91272 0.91170 0.89458 0.92230 0.90403 0.93955 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.54 11.31 55.43 0.63 -22.91 16 2 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 3 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.11 8.56 -34.44 -0.29 -13.40 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.05 2.07 -91.73 -0.19 0.86 16 10 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 11 C 0.10 1.79 6.29 -3.71 -0.02 1.77 16 12 N -0.55 -9.31 2.98 -174.57 -0.52 -9.83 16 13 C 0.57 9.54 7.71 -86.92 -0.67 8.87 16 14 S -0.69 -13.65 27.03 -107.50 -2.91 -16.56 16 15 N -0.69 -9.05 5.47 -62.03 -0.34 -9.39 16 16 C 0.14 1.56 4.97 -4.04 -0.02 1.54 16 17 C -0.13 -1.08 3.75 -89.81 -0.34 -1.42 16 18 C -0.14 -1.16 7.65 -25.82 -0.20 -1.36 16 19 C -0.14 -1.01 8.09 -25.83 -0.21 -1.22 16 20 C -0.13 -0.93 7.65 -25.92 -0.20 -1.13 16 21 C 0.09 1.50 6.44 -3.56 -0.02 1.48 16 22 C -0.12 -2.50 5.15 -26.61 -0.14 -2.63 16 23 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.11 2.11 5.99 -50.50 -0.30 1.81 16 29 H 0.40 4.50 5.95 -40.82 -0.24 4.26 16 30 H 0.08 1.05 7.89 -51.93 -0.41 0.64 16 31 H 0.08 1.03 7.82 -51.93 -0.41 0.63 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.06 0.80 5.59 -51.93 -0.29 0.51 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.11 2.52 6.03 -51.93 -0.31 2.20 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -28.73 337.47 -12.60 -41.33 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.99 Total: 4.69 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.53 Total: -7.68 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.23 Total: -42.13 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -13.65 SS G_CDS: -2.91 Total: -16.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.73 -12.60 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325114256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.009 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds