Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34945 * 126.04306 * 2 1 4 4 C 1.35305 * 107.74780 * 180.14567 * 3 2 1 5 5 C 1.50708 * 126.03883 * 179.87238 * 4 3 2 6 6 H 1.08994 * 109.47143 * 24.71679 * 5 4 3 7 7 O 1.42909 * 109.46810 * 144.71576 * 5 4 3 8 8 C 1.53003 * 109.46949 * 264.71205 * 5 4 3 9 9 N 1.46499 * 109.46708 * 179.97438 * 8 5 4 10 10 C 1.34784 * 119.99893 * 180.02562 * 9 8 5 11 11 O 1.21588 * 119.99858 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99935 * 179.72905 * 10 9 8 13 13 C 1.46496 * 119.99973 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47401 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47134 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99857 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99888 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47350 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46833 * 120.00589 * 19 17 15 22 22 H 1.48506 * 109.46889 * 240.00142 * 19 17 15 23 23 C 1.39872 * 107.92244 * 359.61187 * 4 3 2 24 24 N 1.30836 * 108.20234 * 0.23951 * 23 4 3 25 25 H 1.08997 * 109.47381 * 270.26267 * 1 2 3 26 26 H 1.09006 * 109.46948 * 30.26266 * 1 2 3 27 27 H 1.09001 * 109.47463 * 150.26042 * 1 2 3 28 28 H 1.08002 * 126.12500 * 359.97438 * 3 2 1 29 29 H 0.96700 * 114.00152 * 60.00667 * 7 5 4 30 30 H 1.08998 * 109.46692 * 60.00339 * 8 5 4 31 31 H 1.08994 * 109.47584 * 300.00203 * 8 5 4 32 32 H 0.97005 * 120.00261 * 0.02562 * 9 8 5 33 33 H 0.97004 * 120.00018 * 359.97438 * 12 10 9 34 34 H 1.09007 * 109.47081 * 299.99672 * 13 12 10 35 35 H 1.08997 * 109.47795 * 59.99548 * 13 12 10 36 36 H 1.09002 * 109.46321 * 299.99746 * 14 13 12 37 37 H 1.08993 * 109.47232 * 59.99541 * 14 13 12 38 38 H 0.96995 * 119.99958 * 179.97438 * 18 17 15 39 39 H 1.07999 * 125.89852 * 180.26367 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0911 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5451 -0.0072 6 1 4.5201 2.5156 0.4226 7 8 5.7984 0.9297 0.7686 8 6 5.2559 1.7336 -1.4451 9 7 6.4457 2.5882 -1.4489 10 6 7.0524 2.8936 -2.6131 11 8 6.6124 2.4593 -3.6601 12 7 8.1438 3.6843 -2.6171 13 6 8.8029 4.0166 -3.8825 14 6 10.0061 4.9212 -3.6087 15 6 10.6844 5.2625 -4.9104 16 1 10.2965 4.8729 -5.8400 17 6 11.8004 6.0723 -4.9146 18 7 12.2732 6.5463 -3.7826 19 14 12.6417 6.4948 -6.5281 20 1 11.9198 5.8407 -7.6489 21 1 12.6277 7.9669 -6.7229 22 1 14.0461 6.0131 -6.4950 23 6 3.5346 -0.7323 0.0037 24 7 2.2891 -1.1329 0.0057 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5098 28 1 1.9283 2.1193 -0.0004 29 1 6.0700 0.0606 0.4431 30 1 4.4700 2.2029 -2.0367 31 1 5.5038 0.7631 -1.8748 32 1 6.7970 2.9344 -0.6135 33 1 8.4925 4.0340 -1.7821 34 1 9.1395 3.1007 -4.3683 35 1 8.0993 4.5356 -4.5334 36 1 9.6690 5.8370 -3.1231 37 1 10.7099 4.4026 -2.9578 38 1 13.0585 7.1156 -3.7856 39 1 4.4053 -1.3712 0.0072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325237690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = -9.724400 kcal Electronic energy + Delta-G solvation = -20963.945235 eV Core-core repulsion = 17522.316001 eV Total energy + Delta-G solvation = -3441.629235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.65634 -39.55267 -37.67138 -34.89010 -34.00245 -33.57703 -32.77421 -31.40053 -29.68050 -28.31659 -26.67570 -24.63184 -23.11409 -21.53729 -21.00825 -20.78938 -20.34399 -18.05922 -17.89023 -16.44248 -16.28313 -15.87055 -15.81099 -15.31222 -14.90895 -14.76770 -14.50601 -14.25354 -13.81422 -13.47008 -13.34780 -13.20698 -13.10724 -12.92922 -12.26379 -12.24883 -11.83332 -11.14140 -11.02438 -11.01894 -10.59291 -10.50118 -10.28344 -9.89490 -9.82323 -9.52393 -9.21333 -8.96577 -8.81960 -8.45287 -8.18794 -6.06372 -4.08681 1.47521 2.11181 2.33552 3.12873 3.30576 3.38164 3.43838 3.65621 4.04487 4.19356 4.41370 4.43174 4.60400 4.67851 4.73242 4.80280 4.88040 4.94587 4.98104 5.30757 5.32068 5.46588 5.70244 5.89448 6.19762 6.34861 6.44512 6.55645 6.65167 6.82463 7.06404 7.25707 7.31048 7.36501 7.61673 7.67693 7.93397 8.30014 8.50783 8.96806 9.06537 9.55887 11.05353 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.049811 B = 0.002293 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.991951 B =12209.933269 C =12443.025940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.375 5.375 3 C 0.072 3.928 4 C -0.270 4.270 5 C 0.179 3.821 6 H 0.109 0.891 7 O -0.552 6.552 8 C 0.116 3.884 9 N -0.749 5.749 10 C 0.698 3.302 11 O -0.601 6.601 12 N -0.738 5.738 13 C 0.140 3.860 14 C 0.012 3.988 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.062 3.938 24 N -0.295 5.295 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.377 0.623 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.398 0.602 33 H 0.394 0.606 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.940 -11.216 12.406 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.157 5.157 3 C -0.075 4.075 4 C -0.282 4.282 5 C 0.118 3.882 6 H 0.126 0.874 7 O -0.357 6.357 8 C -0.010 4.010 9 N -0.407 5.407 10 C 0.397 3.603 11 O -0.480 6.480 12 N -0.392 5.392 13 C 0.017 3.983 14 C -0.025 4.025 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.125 4.125 24 N -0.116 5.116 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.194 0.806 29 H 0.225 0.775 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.227 0.773 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -23.223 -11.969 11.810 28.671 hybrid contribution 1.303 0.850 -0.391 1.605 sum -21.920 -11.119 11.419 27.102 Atomic orbital electron populations 1.21896 0.73992 1.04736 1.03478 1.48524 1.06805 1.03810 1.56579 1.22327 0.90592 0.93653 1.00969 1.20597 0.94998 0.94619 1.18001 1.20235 0.83138 0.94745 0.90039 0.87356 1.86594 1.55752 1.37400 1.55919 1.21789 0.87542 0.95234 0.96404 1.45000 1.31628 1.55824 1.08224 1.16071 0.80680 0.79780 0.83721 1.90886 1.67404 1.58908 1.30842 1.45520 1.29434 1.52449 1.11794 1.21577 0.94913 0.99132 0.82640 1.19333 0.91083 0.94106 0.98010 1.21101 1.11586 1.30158 0.92949 0.92175 1.25005 0.97045 0.95822 0.96528 1.69966 1.23782 1.34092 1.25500 0.86458 0.79315 0.78095 0.83697 1.19581 1.20983 1.20966 1.23666 0.95395 0.94222 0.99169 1.77393 1.01603 1.08192 1.24439 0.90634 0.89269 0.89163 0.80586 0.77533 0.91111 0.91550 0.76760 0.77335 0.92838 0.92857 0.95959 0.95930 0.92943 0.79966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.47 59.85 0.69 1.09 16 2 N -0.38 -3.04 4.01 -68.16 -0.27 -3.32 16 3 C 0.07 0.52 11.40 -17.23 -0.20 0.33 16 4 C -0.27 -2.25 5.15 -105.05 -0.54 -2.79 16 5 C 0.18 1.46 3.51 -27.88 -0.10 1.36 16 6 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 7 O -0.55 -4.71 12.97 -35.23 -0.46 -5.17 16 8 C 0.12 1.25 5.32 -4.04 -0.02 1.23 16 9 N -0.75 -9.53 5.45 -65.23 -0.36 -9.89 16 10 C 0.70 12.43 8.57 -86.91 -0.74 11.69 16 11 O -0.60 -13.20 16.34 5.29 0.09 -13.11 16 12 N -0.74 -13.34 5.56 -65.22 -0.36 -13.70 16 13 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 16 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.06 0.55 11.40 -17.36 -0.20 0.36 16 24 N -0.30 -3.08 12.58 30.62 0.39 -2.69 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.38 2.24 8.24 45.56 0.38 2.62 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 4.21 8.36 -40.82 -0.34 3.87 16 33 H 0.39 6.13 8.49 -40.82 -0.35 5.79 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.18 1.13 7.64 -52.49 -0.40 0.73 16 LS Contribution 341.41 15.07 5.14 5.14 Total: -1.00 -36.70 341.41 -6.71 -43.41 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.90 Total: 5.24 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.69 Total: 3.13 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.13 Total: -55.16 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.37 Total: -18.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.70 -6.71 -43.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325237690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.684 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds