Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.03669 * 2 1 4 4 C 1.35314 * 107.74841 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04240 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46959 * 339.99739 * 5 4 3 7 7 O 1.42898 * 109.46964 * 219.99768 * 5 4 3 8 8 C 1.52997 * 109.47078 * 99.99651 * 5 4 3 9 9 N 1.46497 * 109.47195 * 184.99754 * 8 5 4 10 10 C 1.34777 * 120.00267 * 179.97438 * 9 8 5 11 11 O 1.21589 * 119.99760 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00215 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00125 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47246 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47226 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99686 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99972 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99766 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99905 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47400 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47221 * 120.00232 * 19 17 15 22 22 H 1.48496 * 109.47347 * 239.99893 * 19 17 15 23 23 C 1.39873 * 107.91835 * 0.26186 * 4 3 2 24 24 N 1.30835 * 108.20244 * 359.55923 * 23 4 3 25 25 H 1.09007 * 109.47316 * 89.99941 * 1 2 3 26 26 H 1.09004 * 109.47024 * 209.99363 * 1 2 3 27 27 H 1.08998 * 109.47246 * 329.99475 * 1 2 3 28 28 H 1.08005 * 126.12899 * 359.96069 * 3 2 1 29 29 H 0.96698 * 113.99898 * 299.99550 * 7 5 4 30 30 H 1.09001 * 109.47630 * 305.00104 * 8 5 4 31 31 H 1.09004 * 109.47346 * 65.00234 * 8 5 4 32 32 H 0.96999 * 120.00041 * 0.02562 * 9 8 5 33 33 H 0.97006 * 119.99816 * 0.02562 * 12 10 9 34 34 H 1.09008 * 109.47182 * 299.99689 * 13 12 10 35 35 H 1.08994 * 109.47784 * 60.00021 * 13 12 10 36 36 H 1.09000 * 109.46454 * 299.99414 * 14 13 12 37 37 H 1.08993 * 109.47075 * 59.99661 * 14 13 12 38 38 H 0.97002 * 119.99282 * 180.02562 * 18 17 15 39 39 H 1.08000 * 125.89813 * 179.73483 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0013 6 1 4.5002 2.5418 -0.3502 7 8 5.7572 0.9847 -0.8642 8 6 5.3276 1.6391 1.4222 9 7 6.4447 2.5864 1.4456 10 6 7.0965 2.8316 2.5995 11 8 6.7574 2.2661 3.6211 12 7 8.1239 3.7036 2.6211 13 6 8.8326 3.9696 3.8753 14 6 9.9459 4.9891 3.6257 15 6 10.6746 5.2633 4.9161 16 1 10.3735 4.7609 5.8235 17 6 11.7256 6.1554 4.9381 18 7 12.0919 6.7674 3.8332 19 14 12.6283 6.4957 6.5377 20 1 12.0262 5.6867 7.6278 21 1 14.0601 6.1323 6.3851 22 1 12.5168 7.9383 6.8717 23 6 3.5347 -0.7321 -0.0051 24 7 2.2892 -1.1328 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9281 2.1194 -0.0006 29 1 6.0434 0.0965 -0.6111 30 1 4.5453 1.9830 2.0989 31 1 5.6774 0.6570 1.7405 32 1 6.7150 3.0378 0.6306 33 1 8.3941 4.1550 1.8061 34 1 8.1334 4.3685 4.6103 35 1 9.2659 3.0430 4.2516 36 1 10.6453 4.5906 2.8907 37 1 9.5124 5.9157 3.2497 38 1 12.8316 7.3948 3.8487 39 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325237691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = -40.208182 kcal Electronic energy + Delta-G solvation = -20957.314992 eV Core-core repulsion = 17514.363881 eV Total energy + Delta-G solvation = -3442.951111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.23941 -40.93391 -38.46750 -36.58662 -35.23457 -34.74891 -34.07943 -32.18781 -31.35071 -29.16842 -27.40816 -26.39741 -24.04983 -22.84456 -22.13986 -21.89830 -21.25075 -19.42596 -18.52582 -18.37598 -17.34380 -16.89190 -16.48895 -16.45455 -16.31272 -16.05772 -15.42915 -15.20236 -15.07806 -14.93844 -14.57413 -14.25070 -13.82623 -13.58897 -13.45387 -13.20767 -13.17606 -12.91349 -12.49500 -12.49307 -12.21047 -11.67741 -11.61334 -11.48897 -11.27668 -11.06455 -10.59068 -10.41494 -10.30890 -9.66808 -9.42319 -8.22165 -6.32086 0.91530 1.42546 1.43377 1.56342 1.61157 1.69264 1.93041 2.21421 2.43255 3.12602 3.39657 3.51498 3.70302 3.94427 3.97137 4.22444 4.29184 4.35369 4.44202 4.51205 4.55327 4.66134 4.70689 4.78758 4.88489 4.90619 5.22570 5.34941 5.52477 5.55841 5.62060 5.62705 5.81908 6.08626 6.10899 6.19896 6.67584 6.81331 6.81490 7.18768 7.37139 7.65074 8.89934 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.048953 B = 0.002290 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.840249 B =12226.197170 C =12428.894421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.381 5.381 3 C 0.076 3.924 4 C -0.287 4.287 5 C 0.198 3.802 6 H 0.123 0.877 7 O -0.562 6.562 8 C 0.117 3.883 9 N -0.727 5.727 10 C 0.697 3.303 11 O -0.644 6.644 12 N -0.733 5.733 13 C 0.160 3.840 14 C 0.023 3.977 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.052 3.948 24 N -0.338 5.338 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.210 0.790 29 H 0.387 0.613 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.412 0.588 33 H 0.407 0.593 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.009 0.991 37 H 0.010 0.990 38 H 0.265 0.735 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.622 -10.859 -12.854 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.162 5.162 3 C -0.072 4.072 4 C -0.299 4.299 5 C 0.137 3.863 6 H 0.141 0.859 7 O -0.369 6.369 8 C -0.008 4.008 9 N -0.384 5.384 10 C 0.396 3.604 11 O -0.526 6.526 12 N -0.388 5.388 13 C 0.036 3.964 14 C -0.014 4.014 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.134 4.134 24 N -0.159 5.159 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.227 0.773 29 H 0.237 0.763 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.249 0.751 33 H 0.243 0.757 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -23.869 -11.714 -12.298 29.295 hybrid contribution 1.429 0.729 0.424 1.659 sum -22.440 -10.985 -11.874 27.662 Atomic orbital electron populations 1.22210 0.72045 1.05938 1.04675 1.48868 1.08048 1.03448 1.55858 1.22912 0.90292 0.94864 0.99089 1.20651 0.95515 0.94350 1.19405 1.20036 0.83294 0.96260 0.86684 0.85921 1.86573 1.58759 1.37080 1.54468 1.21947 0.87844 0.92412 0.98558 1.44846 1.35883 1.48283 1.09362 1.16189 0.80036 0.79988 0.84168 1.90860 1.70699 1.56468 1.34573 1.45209 1.34221 1.46155 1.13235 1.21059 0.93058 0.98011 0.84276 1.19136 0.92353 0.93266 0.96667 1.21501 1.15987 1.25071 0.95765 0.92329 1.25878 0.97877 0.95454 1.00097 1.70069 1.28907 1.28830 1.28785 0.85384 0.78194 0.78081 0.79301 1.19003 1.20267 1.20209 1.24047 0.95648 0.95051 0.98647 1.77325 1.02497 1.09980 1.26125 0.89425 0.89411 0.86675 0.77340 0.76322 0.91834 0.92391 0.75121 0.75748 0.93879 0.93966 0.97278 0.97206 0.92571 0.78522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.47 127.77 1.47 2.04 16 2 N -0.38 -5.63 4.01 -369.55 -1.48 -7.11 16 3 C 0.08 0.95 11.40 83.54 0.95 1.91 16 4 C -0.29 -4.34 5.12 -20.14 -0.10 -4.44 16 5 C 0.20 2.83 3.45 29.85 0.10 2.93 16 6 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 7 O -0.56 -8.61 13.21 -148.98 -1.97 -10.58 16 8 C 0.12 2.38 5.29 86.38 0.46 2.84 16 9 N -0.73 -17.40 5.51 -478.54 -2.64 -20.04 16 10 C 0.70 24.35 8.57 179.05 1.53 25.88 16 11 O -0.64 -28.27 16.34 -3.99 -0.07 -28.34 16 12 N -0.73 -26.13 5.56 -478.53 -2.66 -28.79 16 13 C 0.16 7.08 5.61 86.38 0.48 7.57 16 14 C 0.02 1.19 5.09 29.85 0.15 1.34 16 15 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 17 C 0.01 0.31 5.46 84.65 0.46 0.78 16 18 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.05 0.89 11.44 85.24 0.97 1.86 16 24 N -0.34 -6.89 12.58 -57.02 -0.72 -7.61 16 25 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 29 H 0.39 4.04 8.35 -74.06 -0.62 3.42 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.41 7.72 8.49 -92.71 -0.79 6.93 16 33 H 0.41 12.28 8.49 -92.70 -0.79 11.49 16 34 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.20 2.37 7.75 -2.91 -0.02 2.35 16 Total: -1.00 -78.78 341.95 -1.61 -80.39 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -1.10 Total: 18.09 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.72 Total: 12.23 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -7.21 Total: -117.72 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -2.03 Total: -38.92 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -78.78 -1.61 -80.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325237691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.182 kcal (2) G-P(sol) polarization free energy of solvation -78.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds