Wall clock time and date at job start Tue Mar 31 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48503 * 109.46892 * 270.00277 * 3 2 1 5 5 H 1.48505 * 109.46969 * 29.99646 * 3 2 1 6 6 H 1.48498 * 109.47395 * 149.99897 * 3 2 1 7 7 C 1.37874 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99950 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00129 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.49558 * 60.06823 * 9 7 2 11 11 C 1.53045 * 109.52558 * 180.14668 * 9 7 2 12 12 C 1.53042 * 109.53759 * 181.33458 * 11 9 7 13 13 C 1.53620 * 109.24332 * 298.50928 * 12 11 9 14 14 N 1.46926 * 108.54011 * 54.85532 * 13 12 11 15 15 C 1.34783 * 120.62695 * 126.37277 * 14 13 12 16 16 S 1.71197 * 119.99902 * 4.77959 * 15 14 13 17 17 N 1.34778 * 120.00006 * 184.78753 * 15 14 13 18 18 C 1.46494 * 119.99947 * 174.91853 * 17 15 14 19 19 C 1.53007 * 109.46992 * 179.97438 * 18 17 15 20 20 C 1.53782 * 113.61184 * 184.99842 * 19 18 17 21 21 C 1.53786 * 87.07865 * 219.93583 * 20 19 18 22 22 C 1.53776 * 87.08128 * 25.43363 * 21 20 19 23 23 C 1.46918 * 118.74320 * 306.09533 * 14 13 12 24 24 H 0.97000 * 119.99977 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46093 * 301.35754 * 11 9 7 26 26 H 1.08999 * 109.45910 * 61.31109 * 11 9 7 27 27 H 1.09000 * 109.50034 * 58.58968 * 12 11 9 28 28 H 1.09008 * 109.49598 * 178.65141 * 12 11 9 29 29 H 1.09002 * 109.74248 * 295.12556 * 13 12 11 30 30 H 1.08991 * 109.66877 * 174.55089 * 13 12 11 31 31 H 0.97003 * 120.00002 * 354.91512 * 17 15 14 32 32 H 1.09000 * 109.47386 * 59.99737 * 18 17 15 33 33 H 1.08995 * 109.47511 * 299.99601 * 18 17 15 34 34 H 1.08996 * 112.84648 * 316.19665 * 19 18 17 35 35 H 1.09005 * 113.61217 * 105.38769 * 20 19 18 36 36 H 1.08995 * 113.61828 * 334.48308 * 20 19 18 37 37 H 1.09005 * 113.60870 * 139.98354 * 21 20 19 38 38 H 1.08994 * 113.61156 * 270.88325 * 21 20 19 39 39 H 1.09001 * 113.61048 * 89.11387 * 22 21 20 40 40 H 1.08999 * 113.61439 * 220.01520 * 22 21 20 41 41 H 1.09005 * 109.59212 * 173.64879 * 23 14 13 42 42 H 1.09001 * 109.58713 * 294.07319 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8750 -0.6811 0.8916 11 6 4.0231 -2.6364 -0.0021 12 6 5.5532 -2.6369 0.0321 13 6 6.0879 -1.9319 -1.2237 14 7 5.4868 -0.5934 -1.2997 15 6 6.2628 0.5021 -1.4191 16 16 7.9563 0.3350 -1.6066 17 7 5.7057 1.7290 -1.3907 18 6 6.5574 2.9208 -1.4083 19 6 5.6811 4.1745 -1.3700 20 6 6.4743 5.4848 -1.5076 21 6 5.5341 6.0737 -0.4426 22 6 5.3213 4.6336 0.0529 23 6 4.0234 -0.4722 -1.2494 24 1 -0.4850 0.8400 -0.0004 25 1 3.6401 -3.1594 0.8742 26 1 3.6798 -3.1414 -0.9049 27 1 5.8974 -2.1104 0.9223 28 1 5.9162 -3.6645 0.0540 29 1 5.8175 -2.5047 -2.1108 30 1 7.1723 -1.8424 -1.1605 31 1 4.7408 1.8229 -1.3587 32 1 7.1576 2.9251 -2.3182 33 1 7.2152 2.9102 -0.5393 34 1 4.8227 4.1113 -2.0387 35 1 6.3746 5.9548 -2.4861 36 1 7.5104 5.4046 -1.1790 37 1 6.0399 6.7139 0.2802 38 1 4.6355 6.5299 -0.8578 39 1 6.0423 4.3207 0.8080 40 1 4.2909 4.4164 0.3343 41 1 3.7453 0.5808 -1.2031 42 1 3.5882 -0.9284 -2.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327016502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:26 Heat of formation + Delta-G solvation = 31.700578 kcal Electronic energy + Delta-G solvation = -21093.155451 eV Core-core repulsion = 18199.615753 eV Total energy + Delta-G solvation = -2893.539698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92600 -39.00743 -36.40448 -33.80538 -32.42556 -30.89861 -28.58255 -25.99566 -25.73682 -25.30840 -23.18024 -21.99726 -21.70358 -19.75850 -19.27715 -18.06810 -17.25590 -16.84874 -15.84130 -15.14392 -14.91550 -14.64025 -14.41774 -14.29819 -14.04526 -13.79870 -13.39490 -12.91447 -12.63776 -12.51942 -12.27037 -12.12928 -11.63972 -11.48483 -11.33239 -10.89041 -10.80129 -10.76712 -10.71159 -10.55553 -10.39772 -10.30399 -10.06138 -9.57244 -9.43786 -8.95287 -8.52682 -7.46825 -7.14514 -6.40327 -4.40863 1.76238 2.23373 2.76237 2.91986 2.96041 3.02124 3.50074 4.01669 4.37485 4.43299 4.49109 4.65299 4.87989 5.03169 5.06758 5.27012 5.31046 5.32796 5.51914 5.55168 5.60246 5.62492 5.70980 5.75873 5.78146 5.82160 5.86669 5.99367 6.03502 6.10498 6.21190 6.23673 6.30254 6.48181 6.54569 6.67745 6.85728 7.05941 7.18451 7.38654 7.51070 8.20125 8.66359 9.18879 10.72617 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.008144 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.109435 B = 3437.194552 C = 5359.474291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.074 3.926 3 Si 0.859 3.141 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.007 3.993 10 H 0.034 0.966 11 C -0.103 4.103 12 C -0.135 4.135 13 C 0.104 3.896 14 N -0.557 5.557 15 C 0.569 3.431 16 S -0.689 6.689 17 N -0.694 5.694 18 C 0.136 3.864 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.141 4.141 22 C -0.144 4.144 23 C 0.086 3.914 24 H 0.268 0.732 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.395 0.605 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 6.772 -1.942 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.130 4.130 3 Si 0.688 3.312 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.012 4.012 10 H 0.052 0.948 11 C -0.141 4.141 12 C -0.173 4.173 13 C -0.019 4.019 14 N -0.264 5.264 15 C 0.207 3.793 16 S -0.561 6.561 17 N -0.328 5.328 18 C 0.013 3.987 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.178 4.178 22 C -0.181 4.181 23 C -0.038 4.038 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.236 0.764 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.902 6.796 -2.037 12.182 hybrid contribution -1.294 1.176 0.012 1.748 sum 8.609 7.972 -2.025 11.906 Atomic orbital electron populations 1.69845 1.06005 1.27185 1.49323 1.25047 0.94731 0.98575 0.94605 0.87310 0.81004 0.85104 0.77778 1.20576 1.20859 1.18499 1.20992 0.87938 0.94908 1.51384 0.89876 1.19488 0.97009 0.92921 0.91827 0.94811 1.21482 0.92569 0.98018 1.02024 1.22070 0.97734 1.00087 0.97398 1.22327 1.01634 0.79217 0.98681 1.47696 1.07393 1.05704 1.65624 1.22154 0.94575 0.81944 0.80582 1.93066 0.92661 1.93966 1.76442 1.45341 1.10539 1.04316 1.72577 1.21726 0.92255 0.80264 1.04504 1.22943 0.99579 0.94171 0.98762 1.22830 0.99016 0.94581 0.99711 1.22800 0.99916 0.96361 0.98740 1.23082 1.02261 0.96527 0.96219 1.23079 0.76021 1.00878 1.03802 0.92191 0.91721 0.92199 0.91763 0.90785 0.90757 0.86170 0.76448 0.89331 0.89679 0.88821 0.91026 0.89337 0.91088 0.90120 0.89407 0.91609 0.92531 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 13.96 55.43 0.77 -24.25 16 2 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 3 Si 0.86 19.09 23.15 -169.99 -3.94 15.15 16 4 H -0.28 -5.78 6.75 56.52 0.38 -5.40 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.26 -5.60 6.53 56.52 0.37 -5.23 16 7 C -0.51 -12.98 9.15 -34.45 -0.32 -13.29 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 9 C 0.01 0.16 1.84 -91.65 -0.17 -0.01 16 10 H 0.03 0.76 7.21 -51.93 -0.37 0.39 16 11 C -0.10 -1.82 5.11 -26.69 -0.14 -1.95 16 12 C -0.13 -2.03 6.10 -26.39 -0.16 -2.19 16 13 C 0.10 1.65 6.33 -3.49 -0.02 1.63 16 14 N -0.56 -10.07 2.97 -174.53 -0.52 -10.59 16 15 C 0.57 10.56 7.71 -86.91 -0.67 9.90 16 16 S -0.69 -13.77 27.03 -107.50 -2.91 -16.68 16 17 N -0.69 -11.75 5.47 -62.03 -0.34 -12.09 16 18 C 0.14 1.90 4.98 -4.04 -0.02 1.88 16 19 C -0.14 -1.60 3.75 -89.80 -0.34 -1.94 16 20 C -0.12 -1.15 7.64 -25.92 -0.20 -1.35 16 21 C -0.14 -1.33 8.08 -25.92 -0.21 -1.54 16 22 C -0.14 -1.69 7.64 -25.92 -0.20 -1.88 16 23 C 0.09 1.67 5.10 -3.72 -0.02 1.65 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.12 1.99 5.99 -50.47 -0.30 1.69 16 31 H 0.40 6.91 4.48 -40.82 -0.18 6.73 16 32 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 33 H 0.09 1.22 7.80 -51.93 -0.40 0.82 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.01 7.90 -51.93 -0.41 0.60 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.14 1.38 -51.93 -0.07 1.07 16 42 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -28.85 328.44 -11.36 -40.21 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.83 Total: 10.56 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -2.55 Total: -7.26 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.08 Total: -46.93 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -3.94 Total: 15.15 kcal Atomic # 16 Polarization: -13.77 SS G_CDS: -2.91 Total: -16.68 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.85 -11.36 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327016502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.914 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds