Wall clock time and date at job start Tue Mar 31 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48503 * 109.46892 * 270.00277 * 3 2 1 5 5 H 1.48505 * 109.46969 * 29.99646 * 3 2 1 6 6 H 1.48498 * 109.47395 * 149.99897 * 3 2 1 7 7 C 1.37874 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99950 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00129 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.49558 * 60.06823 * 9 7 2 11 11 C 1.53045 * 109.52558 * 180.14668 * 9 7 2 12 12 C 1.53042 * 109.53759 * 181.33458 * 11 9 7 13 13 C 1.53620 * 109.24332 * 298.50928 * 12 11 9 14 14 N 1.46926 * 108.54011 * 54.85532 * 13 12 11 15 15 C 1.34783 * 120.62695 * 126.37277 * 14 13 12 16 16 S 1.71197 * 119.99902 * 4.77959 * 15 14 13 17 17 N 1.34778 * 120.00006 * 184.78753 * 15 14 13 18 18 C 1.46494 * 119.99947 * 174.91853 * 17 15 14 19 19 C 1.53007 * 109.46992 * 179.97438 * 18 17 15 20 20 C 1.53782 * 113.61184 * 184.99842 * 19 18 17 21 21 C 1.53786 * 87.07865 * 219.93583 * 20 19 18 22 22 C 1.53776 * 87.08128 * 25.43363 * 21 20 19 23 23 C 1.46918 * 118.74320 * 306.09533 * 14 13 12 24 24 H 0.97000 * 119.99977 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46093 * 301.35754 * 11 9 7 26 26 H 1.08999 * 109.45910 * 61.31109 * 11 9 7 27 27 H 1.09000 * 109.50034 * 58.58968 * 12 11 9 28 28 H 1.09008 * 109.49598 * 178.65141 * 12 11 9 29 29 H 1.09002 * 109.74248 * 295.12556 * 13 12 11 30 30 H 1.08991 * 109.66877 * 174.55089 * 13 12 11 31 31 H 0.97003 * 120.00002 * 354.91512 * 17 15 14 32 32 H 1.09000 * 109.47386 * 59.99737 * 18 17 15 33 33 H 1.08995 * 109.47511 * 299.99601 * 18 17 15 34 34 H 1.08996 * 112.84648 * 316.19665 * 19 18 17 35 35 H 1.09005 * 113.61217 * 105.38769 * 20 19 18 36 36 H 1.08995 * 113.61828 * 334.48308 * 20 19 18 37 37 H 1.09005 * 113.60870 * 139.98354 * 21 20 19 38 38 H 1.08994 * 113.61156 * 270.88325 * 21 20 19 39 39 H 1.09001 * 113.61048 * 89.11387 * 22 21 20 40 40 H 1.08999 * 113.61439 * 220.01520 * 22 21 20 41 41 H 1.09005 * 109.59212 * 173.64879 * 23 14 13 42 42 H 1.09001 * 109.58713 * 294.07319 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8750 -0.6811 0.8916 11 6 4.0231 -2.6364 -0.0021 12 6 5.5532 -2.6369 0.0321 13 6 6.0879 -1.9319 -1.2237 14 7 5.4868 -0.5934 -1.2997 15 6 6.2628 0.5021 -1.4191 16 16 7.9563 0.3350 -1.6066 17 7 5.7057 1.7290 -1.3907 18 6 6.5574 2.9208 -1.4083 19 6 5.6811 4.1745 -1.3700 20 6 6.4743 5.4848 -1.5076 21 6 5.5341 6.0737 -0.4426 22 6 5.3213 4.6336 0.0529 23 6 4.0234 -0.4722 -1.2494 24 1 -0.4850 0.8400 -0.0004 25 1 3.6401 -3.1594 0.8742 26 1 3.6798 -3.1414 -0.9049 27 1 5.8974 -2.1104 0.9223 28 1 5.9162 -3.6645 0.0540 29 1 5.8175 -2.5047 -2.1108 30 1 7.1723 -1.8424 -1.1605 31 1 4.7408 1.8229 -1.3587 32 1 7.1576 2.9251 -2.3182 33 1 7.2152 2.9102 -0.5393 34 1 4.8227 4.1113 -2.0387 35 1 6.3746 5.9548 -2.4861 36 1 7.5104 5.4046 -1.1790 37 1 6.0399 6.7139 0.2802 38 1 4.6355 6.5299 -0.8578 39 1 6.0423 4.3207 0.8080 40 1 4.2909 4.4164 0.3343 41 1 3.7453 0.5808 -1.2031 42 1 3.5882 -0.9284 -2.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327016502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:25 Heat of formation + Delta-G solvation = 16.356110 kcal Electronic energy + Delta-G solvation = -21093.820837 eV Core-core repulsion = 18199.615753 eV Total energy + Delta-G solvation = -2894.205084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27532 -40.02085 -37.73443 -35.49705 -33.99578 -32.51810 -29.71432 -27.60007 -26.85780 -26.54400 -24.29472 -23.35042 -23.21620 -20.99708 -20.45385 -19.42460 -19.07084 -18.28879 -16.90850 -16.50227 -16.34793 -16.05222 -15.83252 -15.65068 -15.23360 -15.05774 -15.01593 -14.54753 -13.90331 -13.44486 -13.37438 -13.34291 -13.09824 -13.01150 -12.60151 -12.38919 -12.36590 -12.18284 -11.88995 -11.64859 -11.62518 -11.39521 -11.26051 -11.24384 -11.16570 -10.91466 -9.90788 -8.99958 -8.69007 -8.43250 -6.48243 0.31565 0.75315 0.97006 1.16109 1.22320 1.57493 2.06615 2.14332 2.89727 3.48720 3.51478 3.53672 3.64273 3.86887 3.93352 4.03225 4.10123 4.17201 4.28973 4.36280 4.38003 4.53846 4.58008 4.72615 4.75262 4.78472 4.81443 4.85525 4.90444 4.98091 5.05556 5.10172 5.15437 5.21369 5.28321 5.39315 5.47548 5.51125 5.53229 5.77837 6.07289 6.20385 6.61046 7.15564 8.72845 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.008144 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.109435 B = 3437.194552 C = 5359.474291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.020 3.980 3 Si 0.915 3.085 4 H -0.254 1.254 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.514 4.514 8 H 0.049 0.951 9 C 0.009 3.991 10 H 0.021 0.979 11 C -0.100 4.100 12 C -0.122 4.122 13 C 0.102 3.898 14 N -0.557 5.557 15 C 0.570 3.430 16 S -0.717 6.717 17 N -0.691 5.691 18 C 0.136 3.864 19 C -0.139 4.139 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.154 4.154 23 C 0.095 3.905 24 H 0.269 0.731 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.394 0.606 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 7.790 -2.538 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.179 4.179 3 Si 0.742 3.258 4 H -0.179 1.179 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.553 4.553 8 H 0.067 0.933 9 C -0.011 4.011 10 H 0.039 0.961 11 C -0.138 4.138 12 C -0.160 4.160 13 C -0.020 4.020 14 N -0.264 5.264 15 C 0.206 3.794 16 S -0.590 6.590 17 N -0.323 5.323 18 C 0.014 3.986 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.170 4.170 22 C -0.192 4.192 23 C -0.029 4.029 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.233 0.767 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.730 7.812 -2.642 14.339 hybrid contribution -1.899 0.771 0.237 2.064 sum 9.831 8.584 -2.405 13.271 Atomic orbital electron populations 1.69996 1.07850 1.28148 1.51456 1.25811 0.95372 1.02275 0.94447 0.86395 0.79752 0.80550 0.79141 1.17949 1.21425 1.17629 1.21219 0.90290 0.93531 1.50248 0.93303 1.19391 0.94214 0.95460 0.92072 0.96100 1.21433 0.94571 0.95581 1.02219 1.21999 0.95335 1.02022 0.96676 1.22503 1.01304 0.78362 0.99827 1.47729 1.06614 1.06512 1.65557 1.22091 0.94058 0.82503 0.80716 1.93107 0.93883 1.94210 1.77780 1.45567 1.10721 1.04615 1.71411 1.21885 0.92390 0.80105 1.04248 1.23016 0.99744 0.94145 0.98908 1.22823 0.99095 0.92625 1.00504 1.22789 1.00293 0.95113 0.98820 1.23167 1.01296 0.98561 0.96169 1.22744 0.77034 1.00267 1.02894 0.92205 0.92039 0.91648 0.92584 0.87288 0.88867 0.86479 0.76674 0.89321 0.90044 0.88990 0.89662 0.88554 0.89746 0.89570 0.89459 0.93145 0.93056 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.15 13.96 21.45 0.30 -53.85 16 2 C 0.02 1.05 5.45 84.65 0.46 1.51 16 3 Si 0.92 39.36 23.15 68.60 1.59 40.95 16 4 H -0.25 -9.80 6.75 99.48 0.67 -9.13 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.25 -10.36 6.53 99.48 0.65 -9.71 16 7 C -0.51 -26.38 9.15 25.60 0.23 -26.15 16 8 H 0.05 2.78 7.99 -2.91 -0.02 2.75 16 9 C 0.01 0.35 1.84 -11.46 -0.02 0.33 16 10 H 0.02 0.92 7.21 -2.39 -0.02 0.91 16 11 C -0.10 -3.39 5.11 30.62 0.16 -3.23 16 12 C -0.12 -3.36 6.10 30.82 0.19 -3.17 16 13 C 0.10 2.95 6.33 86.51 0.55 3.50 16 14 N -0.56 -18.98 2.97 -706.10 -2.09 -21.08 16 15 C 0.57 20.07 7.71 179.05 1.38 21.45 16 16 S -0.72 -27.48 27.03 -56.49 -1.53 -29.01 16 17 N -0.69 -22.07 5.47 -350.17 -1.92 -23.99 16 18 C 0.14 3.56 4.98 86.38 0.43 3.99 16 19 C -0.14 -2.98 3.75 -10.26 -0.04 -3.02 16 20 C -0.11 -1.77 7.64 31.12 0.24 -1.53 16 21 C -0.13 -2.13 8.08 31.12 0.25 -1.88 16 22 C -0.15 -3.33 7.64 31.12 0.24 -3.09 16 23 C 0.09 3.54 5.10 86.36 0.44 3.99 16 24 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.12 3.58 5.99 -3.32 -0.02 3.56 16 31 H 0.39 12.91 4.48 -92.71 -0.42 12.50 16 32 H 0.09 2.33 7.89 -2.39 -0.02 2.32 16 33 H 0.08 2.21 7.80 -2.39 -0.02 2.19 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 37 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.86 7.90 -2.39 -0.02 1.84 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.97 1.38 -2.38 0.00 1.97 16 42 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -62.58 328.44 1.35 -61.24 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: 0.49 Total: 33.05 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.51 Total: -7.30 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.71 Total: -98.92 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.59 Total: 40.95 kcal Atomic # 16 Polarization: -27.48 SS G_CDS: -1.53 Total: -29.01 kcal Total: -62.58 1.35 -61.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327016502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.592 kcal (2) G-P(sol) polarization free energy of solvation -62.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds