Wall clock time and date at job start Tue Mar 31 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00212 * 2 1 4 4 H 1.48493 * 109.47084 * 275.00121 * 3 2 1 5 5 H 1.48501 * 109.46772 * 35.00093 * 3 2 1 6 6 H 1.48500 * 109.46931 * 154.99864 * 3 2 1 7 7 C 1.37878 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99483 * 175.10238 * 7 2 1 9 9 C 1.50692 * 120.00305 * 355.10872 * 7 2 1 10 10 H 1.09003 * 109.52668 * 305.26380 * 9 7 2 11 11 C 1.53043 * 109.49920 * 185.18334 * 9 7 2 12 12 C 1.53038 * 109.53663 * 178.68499 * 11 9 7 13 13 C 1.52755 * 109.38809 * 61.24124 * 12 11 9 14 14 N 1.46934 * 109.00573 * 305.58576 * 13 12 11 15 15 C 1.34773 * 120.63093 * 233.58761 * 14 13 12 16 16 S 1.71202 * 120.00173 * 174.43281 * 15 14 13 17 17 N 1.34776 * 120.00014 * 354.69881 * 15 14 13 18 18 C 1.46502 * 120.00294 * 184.70444 * 17 15 14 19 19 C 1.53005 * 109.47312 * 180.02562 * 18 17 15 20 20 C 1.53774 * 113.61397 * 272.50016 * 19 18 17 21 21 C 1.53779 * 87.08158 * 220.01887 * 20 19 18 22 22 C 1.53779 * 113.61119 * 175.00012 * 19 18 17 23 23 C 1.46925 * 118.73586 * 53.31114 * 14 13 12 24 24 H 0.97006 * 120.00110 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.45866 * 298.70144 * 11 9 7 26 26 H 1.08995 * 109.46211 * 58.67532 * 11 9 7 27 27 H 1.09003 * 109.49746 * 181.31787 * 12 11 9 28 28 H 1.09002 * 109.50017 * 301.37657 * 12 11 9 29 29 H 1.08999 * 109.51379 * 185.70831 * 13 12 11 30 30 H 1.08999 * 109.43630 * 65.41797 * 13 12 11 31 31 H 0.96999 * 119.99933 * 4.71233 * 17 15 14 32 32 H 1.08994 * 109.47100 * 300.00649 * 18 17 15 33 33 H 1.09005 * 109.46659 * 60.00627 * 18 17 15 34 34 H 1.09002 * 112.84526 * 43.81064 * 19 18 17 35 35 H 1.08992 * 113.61879 * 334.56847 * 20 19 18 36 36 H 1.09006 * 113.61263 * 105.47137 * 20 19 18 37 37 H 1.09003 * 113.61942 * 270.88942 * 21 20 19 38 38 H 1.09003 * 113.69345 * 139.99446 * 21 20 19 39 39 H 1.08996 * 113.61565 * 254.52828 * 22 19 18 40 40 H 1.08996 * 113.61668 * 25.35621 * 22 19 18 41 41 H 1.08996 * 109.58687 * 66.43230 * 23 14 13 42 42 H 1.09001 * 109.58063 * 186.85581 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4119 0.5917 7 6 2.0044 -1.1941 0.0005 8 1 3.0815 -1.1958 -0.0793 9 6 1.2551 -2.4967 0.1124 10 1 0.6231 -2.4784 1.0003 11 6 2.2527 -3.6524 0.2192 12 6 1.4927 -4.9726 0.3658 13 6 0.6229 -5.1969 -0.8698 14 7 -0.2385 -4.0232 -1.0681 15 6 -1.5739 -4.1632 -1.1838 16 16 -2.5755 -2.7776 -1.2713 17 7 -2.1214 -5.3941 -1.2252 18 6 -3.5601 -5.5486 -1.4543 19 6 -3.9197 -7.0358 -1.4543 20 6 -3.7787 -7.7036 -2.8323 21 6 -5.0735 -8.4670 -2.5075 22 6 -5.4298 -7.3043 -1.5660 23 6 0.3832 -2.6935 -1.1318 24 1 -0.4850 0.8401 0.0004 25 1 2.8678 -3.6854 -0.6800 26 1 2.8906 -3.5022 1.0902 27 1 2.2038 -5.7927 0.4653 28 1 0.8589 -4.9312 1.2517 29 1 0.0051 -6.0831 -0.7241 30 1 1.2612 -5.3333 -1.7427 31 1 -1.5628 -6.1777 -1.1032 32 1 -4.1106 -5.0421 -0.6616 33 1 -3.8238 -5.1107 -2.4170 34 1 -3.4365 -7.5881 -0.6484 35 1 -3.8788 -7.0091 -3.6664 36 1 -2.9027 -8.3465 -2.9183 37 1 -4.9055 -9.4117 -1.9904 38 1 -5.7497 -8.5638 -3.3570 39 1 -5.8866 -7.6250 -0.6298 40 1 -5.9815 -6.5001 -2.0527 41 1 1.0015 -2.6216 -2.0265 42 1 -0.3928 -1.9284 -1.1589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327016503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:30 Heat of formation + Delta-G solvation = 29.723651 kcal Electronic energy + Delta-G solvation = -20456.504396 eV Core-core repulsion = 17562.878971 eV Total energy + Delta-G solvation = -2893.625424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69297 -38.85638 -36.19066 -33.32425 -32.37198 -30.06213 -28.48486 -25.89939 -25.49285 -24.80258 -22.97009 -22.39384 -21.16252 -19.73734 -19.08279 -17.72057 -16.69342 -16.26043 -15.72439 -15.06716 -14.60630 -14.50560 -14.21005 -14.06117 -13.88406 -13.36555 -12.84275 -12.68999 -12.65917 -12.27516 -12.18381 -11.97939 -11.15938 -11.12749 -10.89557 -10.84469 -10.62766 -10.60687 -10.47128 -10.45298 -10.32968 -10.11861 -9.87946 -9.16951 -8.98510 -8.48848 -8.13814 -6.95228 -6.42676 -5.90587 -4.02846 2.11494 2.65442 3.30124 3.36502 3.43627 3.45458 3.72473 4.34372 4.41191 4.46410 4.48210 4.61520 4.91210 5.05310 5.20843 5.26383 5.35083 5.39018 5.45731 5.51970 5.64058 5.66147 5.73061 5.75125 5.89916 5.94617 6.01397 6.14620 6.21373 6.38109 6.50121 6.60402 6.65861 6.83498 6.92721 7.24339 7.45714 7.65936 7.82717 7.94557 8.16008 8.41043 8.99805 9.62843 11.12449 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.004214 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.779653 B = 6642.168426 C = 7423.475735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.057 0.943 9 C 0.046 3.954 10 H 0.033 0.967 11 C -0.114 4.114 12 C -0.132 4.132 13 C 0.098 3.902 14 N -0.555 5.555 15 C 0.557 3.443 16 S -0.648 6.648 17 N -0.703 5.703 18 C 0.140 3.860 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.128 4.128 23 C 0.095 3.905 24 H 0.265 0.735 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.388 0.612 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -18.530 -3.414 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.026 3.974 10 H 0.051 0.949 11 C -0.151 4.151 12 C -0.171 4.171 13 C -0.029 4.029 14 N -0.262 5.262 15 C 0.198 3.802 16 S -0.519 6.519 17 N -0.338 5.338 18 C 0.016 3.984 19 C -0.147 4.147 20 C -0.175 4.175 21 C -0.180 4.180 22 C -0.166 4.166 23 C -0.025 4.025 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.226 0.774 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.671 -17.501 -3.496 18.726 hybrid contribution 1.362 -0.311 0.154 1.406 sum -4.309 -17.812 -3.341 18.628 Atomic orbital electron populations 1.69947 1.05301 1.26943 1.47081 1.25076 0.94906 0.99082 0.94778 0.86649 0.79857 0.83934 0.77973 1.20746 1.21136 1.20049 1.20920 0.92978 0.89866 1.53280 0.92463 1.18949 0.92245 0.92283 0.93882 0.94896 1.21695 0.98789 0.93826 1.00828 1.21868 0.98624 0.99811 0.96760 1.21771 0.93655 0.87646 0.99778 1.48051 1.02281 1.11122 1.64764 1.22390 0.86611 0.90138 0.81077 1.93369 1.56707 1.27126 1.74723 1.45091 1.10383 1.05041 1.73306 1.21588 0.78720 0.94573 1.03552 1.22866 0.98030 0.95284 0.98474 1.23024 0.98024 0.99407 0.97056 1.22807 0.97846 0.97584 0.99783 1.22850 0.94918 0.98660 1.00162 1.23254 0.99952 0.79967 0.99334 0.92459 0.93093 0.92552 0.91699 0.91929 0.91867 0.90800 0.77395 0.89830 0.90162 0.88979 0.89663 0.91687 0.90334 0.91338 0.91194 0.89392 0.93213 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 11.60 55.43 0.64 -24.36 16 2 C 0.07 1.85 5.36 -17.82 -0.10 1.75 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.26 8.49 -34.44 -0.29 -14.55 16 8 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 9 C 0.05 1.11 2.20 -91.65 -0.20 0.91 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.31 16 12 C -0.13 -2.00 6.06 -26.84 -0.16 -2.16 16 13 C 0.10 1.40 6.36 -3.93 -0.03 1.38 16 14 N -0.55 -10.64 2.98 -175.05 -0.52 -11.16 16 15 C 0.56 10.74 7.71 -86.92 -0.67 10.07 16 16 S -0.65 -15.69 27.01 -107.50 -2.90 -18.59 16 17 N -0.70 -9.89 5.46 -62.03 -0.34 -10.23 16 18 C 0.14 1.74 4.98 -4.04 -0.02 1.72 16 19 C -0.13 -1.12 3.75 -89.81 -0.34 -1.46 16 20 C -0.14 -1.10 7.63 -25.92 -0.20 -1.29 16 21 C -0.14 -1.00 8.08 -25.92 -0.21 -1.21 16 22 C -0.13 -1.00 7.64 -25.92 -0.20 -1.20 16 23 C 0.09 2.24 5.38 -3.71 -0.02 2.22 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.70 5.65 -51.93 -0.29 0.41 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.39 4.36 5.96 -40.82 -0.24 4.12 16 32 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 33 H 0.08 1.10 7.79 -51.93 -0.40 0.69 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.74 7.90 -51.93 -0.41 0.33 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.16 4.37 4.27 -49.62 -0.21 4.16 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -31.82 338.01 -12.62 -44.44 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.01 Total: 4.68 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.57 Total: -6.13 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.22 Total: -45.75 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -15.69 SS G_CDS: -2.90 Total: -18.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.82 -12.62 -44.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327016503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.167 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds