Wall clock time and date at job start Tue Mar 31 2020 07:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47066 * 2 1 4 4 C 1.53005 * 109.47301 * 240.00039 * 2 1 3 5 5 N 1.46501 * 109.47442 * 120.00070 * 2 1 3 6 6 C 1.34947 * 126.03929 * 75.25509 * 5 2 1 7 7 C 1.35309 * 107.74582 * 180.15190 * 6 5 2 8 8 C 1.50699 * 126.03738 * 179.88028 * 7 6 5 9 9 S 1.81401 * 109.46970 * 269.70889 * 8 7 6 10 10 C 1.81400 * 103.00097 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.47145 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00258 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99506 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00308 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.46854 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99441 * 17 15 13 20 20 H 1.48498 * 109.46692 * 239.99413 * 17 15 13 21 21 C 1.39870 * 107.91915 * 359.60950 * 7 6 5 22 22 N 1.30828 * 108.20241 * 0.24680 * 21 7 6 23 23 H 1.09002 * 109.47079 * 300.00037 * 1 2 3 24 24 H 1.08998 * 109.47592 * 59.99763 * 1 2 3 25 25 H 1.09002 * 109.47302 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47243 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46723 * 299.99802 * 3 2 1 28 28 H 1.08995 * 109.46883 * 60.00243 * 3 2 1 29 29 H 1.09002 * 109.46782 * 300.00122 * 4 2 1 30 30 H 1.09007 * 109.46726 * 59.99356 * 4 2 1 31 31 H 1.08994 * 109.47200 * 180.02562 * 4 2 1 32 32 H 1.07998 * 126.12364 * 0.02562 * 6 5 2 33 33 H 1.09007 * 109.47312 * 149.71243 * 8 7 6 34 34 H 1.08998 * 109.47487 * 29.71274 * 8 7 6 35 35 H 1.09001 * 109.46713 * 60.00360 * 10 9 8 36 36 H 1.08993 * 109.47294 * 299.99893 * 10 9 8 37 37 H 1.09001 * 109.46801 * 300.00406 * 11 10 9 38 38 H 1.09001 * 109.46998 * 60.00003 * 11 10 9 39 39 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 40 40 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 41 41 H 0.96999 * 119.99910 * 180.02562 * 16 15 13 42 42 H 1.08001 * 125.89388 * 180.21941 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0212 -2.0251 1.3969 7 6 2.5483 -2.2568 2.6214 8 6 2.7422 -3.6069 3.2622 9 16 1.2626 -4.0406 4.2179 10 6 1.6802 -5.6687 4.9002 11 6 0.5136 -6.1812 5.7473 12 6 0.8661 -7.5541 6.3233 13 6 -0.2831 -8.0591 7.1570 14 1 -1.1755 -7.4606 7.2656 15 6 -0.1950 -9.2849 7.7821 16 7 0.8919 -10.0135 7.6503 17 14 -1.6193 -9.9106 8.8162 18 1 -2.7161 -8.9097 8.8053 19 1 -2.1133 -11.1931 8.2539 20 1 -1.1602 -10.1262 10.2119 21 6 2.8872 -1.0222 3.1847 22 7 2.5699 -0.0827 2.3313 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6765 -0.2074 -2.1393 31 1 3.1300 -0.7216 -1.2490 32 1 1.6646 -2.7738 0.7051 33 1 3.6064 -3.5735 3.9257 34 1 2.9073 -4.3562 2.4880 35 1 2.5710 -5.5841 5.5226 36 1 1.8715 -6.3661 4.0848 37 1 0.3227 -5.4835 6.5627 38 1 -0.3775 -6.2656 5.1252 39 1 1.0573 -8.2518 5.5081 40 1 1.7571 -7.4691 6.9454 41 1 0.9538 -10.8760 8.0897 42 1 3.3333 -0.8706 4.1565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327693252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:42 Heat of formation + Delta-G solvation = 46.078601 kcal Electronic energy + Delta-G solvation = -18893.402596 eV Core-core repulsion = 16000.486376 eV Total energy + Delta-G solvation = -2892.916221 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49696 -37.18465 -34.39440 -32.19227 -31.97813 -30.80577 -28.01891 -27.86878 -27.47387 -26.34887 -23.34361 -22.68794 -20.51639 -20.02979 -19.55056 -17.09012 -16.38062 -15.76716 -15.37472 -14.87281 -14.65318 -14.52587 -14.46433 -14.17161 -13.68586 -13.58902 -13.18939 -12.79558 -12.66501 -12.60308 -12.45741 -12.27947 -12.19676 -11.74498 -11.63694 -11.58121 -11.47228 -10.87557 -10.85274 -10.65762 -10.48785 -9.77621 -9.74401 -9.51776 -9.24520 -9.06722 -8.37522 -8.34740 -7.30514 -5.99651 -4.01733 1.57762 2.02653 2.24620 2.88770 3.15177 3.32493 3.39822 3.44920 4.01417 4.29903 4.40607 4.47483 4.58575 4.74734 4.98522 5.02623 5.05898 5.10773 5.19572 5.26837 5.34118 5.36370 5.39726 5.51517 5.59311 5.59915 5.64905 5.73062 5.73190 5.85174 5.97429 6.21260 6.53024 6.61936 6.78346 6.88584 7.07393 7.59180 7.67085 7.79699 8.00024 8.42362 9.05145 9.62335 11.11771 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041025 B = 0.002378 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.339404 B =11773.212223 C =11963.930722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 C -0.143 4.143 4 C -0.160 4.160 5 N -0.362 5.362 6 C 0.075 3.925 7 C -0.219 4.219 8 C -0.004 4.004 9 S -0.281 6.281 10 C -0.075 4.075 11 C -0.094 4.094 12 C 0.027 3.973 13 C -0.518 4.518 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.063 3.937 22 N -0.295 5.295 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.171 0.829 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.260 0.740 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 20.669 -18.825 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.098 3.902 3 C -0.200 4.200 4 C -0.218 4.218 5 N -0.145 5.145 6 C -0.074 4.074 7 C -0.232 4.232 8 C -0.152 4.152 9 S -0.051 6.051 10 C -0.223 4.223 11 C -0.133 4.133 12 C -0.012 4.012 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.125 4.125 22 N -0.115 5.115 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.188 0.812 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.069 0.931 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.463 22.434 -18.997 29.600 hybrid contribution 0.399 -2.191 0.648 2.319 sum 3.862 20.243 -18.350 27.594 Atomic orbital electron populations 1.22272 0.92865 1.03366 1.03365 1.20716 0.94449 0.93681 0.81364 1.21902 1.02101 0.92964 1.03057 1.22254 1.02313 1.01171 0.96093 1.48807 1.47615 1.04077 1.14007 1.22173 1.00467 0.86560 0.98217 1.19385 1.13145 0.94693 0.95994 1.21430 0.98225 0.95227 1.00349 1.87097 1.27150 1.26410 1.64491 1.23605 1.03554 0.93220 1.01950 1.21448 0.94721 0.99707 0.97420 1.19110 0.97073 0.89348 0.95697 1.21275 1.01786 1.02899 1.29728 0.92514 1.25030 0.95917 0.96880 0.96706 1.69975 1.27051 1.12367 1.44182 0.86519 0.82595 0.78759 0.80065 1.19685 1.21012 1.21003 1.23783 0.99468 0.89961 0.99262 1.77305 1.17878 1.21961 0.94370 0.91499 0.90434 0.91607 0.91691 0.91027 0.90963 0.91483 0.90076 0.91510 0.81220 0.89703 0.90089 0.90676 0.90756 0.92468 0.92529 0.96479 0.96442 0.93058 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.73 37.16 0.32 -0.76 16 2 C 0.18 1.35 1.24 -131.82 -0.16 1.19 16 3 C -0.14 -0.99 8.09 37.16 0.30 -0.68 16 4 C -0.16 -0.87 8.29 37.16 0.31 -0.56 16 5 N -0.36 -3.80 3.43 -48.65 -0.17 -3.97 16 6 C 0.07 0.80 10.51 -17.23 -0.18 0.61 16 7 C -0.22 -2.62 5.36 -105.06 -0.56 -3.18 16 8 C 0.00 -0.04 6.42 36.01 0.23 0.19 16 9 S -0.28 -4.47 21.72 -107.50 -2.33 -6.81 16 10 C -0.08 -1.32 5.94 37.16 0.22 -1.10 16 11 C -0.09 -2.00 5.16 -26.73 -0.14 -2.14 16 12 C 0.03 0.69 4.97 -27.89 -0.14 0.55 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.06 0.75 11.96 -17.37 -0.21 0.55 16 22 N -0.30 -3.67 11.66 30.62 0.36 -3.31 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 29 H 0.07 0.35 7.36 -51.93 -0.38 -0.04 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.17 1.42 7.54 -52.49 -0.40 1.02 16 33 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.18 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -32.21 361.39 -8.90 -41.11 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.50 Total: -3.97 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -0.42 Total: -19.02 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.93 Total: -33.62 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -2.33 Total: -6.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.21 -8.90 -41.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327693252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.191 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds