Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99761 * 2 1 4 4 H 1.48498 * 109.47355 * 270.00365 * 3 2 1 5 5 H 1.48501 * 109.47207 * 30.00610 * 3 2 1 6 6 H 1.48508 * 109.46930 * 150.00626 * 3 2 1 7 7 C 1.37871 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00484 * 173.69341 * 7 2 1 9 9 C 1.50699 * 120.00117 * 353.69652 * 7 2 1 10 10 C 1.53004 * 115.54869 * 86.10593 * 9 7 2 11 11 O 1.45197 * 109.47107 * 65.11218 * 10 9 7 12 12 C 1.34229 * 116.99969 * 179.97438 * 11 10 9 13 13 O 1.20816 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99965 * 179.97438 * 12 11 10 15 15 C 1.52994 * 109.47314 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47219 * 304.99871 * 15 14 12 17 17 C 1.53002 * 109.47009 * 65.00290 * 15 14 12 18 18 C 1.53000 * 109.47309 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47013 * 300.00100 * 18 17 15 20 20 C 1.53001 * 109.47488 * 59.99612 * 19 18 17 21 21 C 1.52994 * 109.47010 * 300.00224 * 20 19 18 22 22 H 1.08994 * 109.47577 * 299.99623 * 21 20 19 23 23 O 1.42906 * 109.46952 * 179.97438 * 21 20 19 24 24 C 1.53000 * 117.49981 * 231.78088 * 9 7 2 25 25 C 1.53004 * 117.50056 * 300.44088 * 9 7 2 26 26 H 0.97001 * 119.99738 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47500 * 305.11054 * 10 9 7 28 28 H 1.09003 * 109.46995 * 185.10750 * 10 9 7 29 29 H 1.08997 * 109.47200 * 300.00661 * 14 12 11 30 30 H 1.09008 * 109.47305 * 59.99751 * 14 12 11 31 31 H 1.09003 * 109.46750 * 300.00076 * 17 15 14 32 32 H 1.08996 * 109.47473 * 59.99736 * 17 15 14 33 33 H 1.09004 * 109.46921 * 59.99736 * 18 17 15 34 34 H 1.08993 * 109.47367 * 179.97438 * 18 17 15 35 35 H 1.09009 * 109.46888 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46980 * 299.99600 * 19 18 17 37 37 H 1.09004 * 109.47020 * 60.00013 * 20 19 18 38 38 H 1.08995 * 109.47249 * 179.97438 * 20 19 18 39 39 H 0.96701 * 113.99851 * 60.00314 * 23 21 20 40 40 H 1.09004 * 117.49698 * 215.00128 * 24 9 7 41 41 H 1.08991 * 117.50168 * 0.02562 * 24 9 7 42 42 H 1.09000 * 117.49236 * 359.97252 * 25 9 7 43 43 H 1.08995 * 117.50160 * 144.96810 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0796 -1.1968 -0.1033 9 6 1.2580 -2.4952 0.1422 10 6 0.7192 -3.0930 -1.1591 11 8 1.8298 -3.4641 -2.0176 12 6 1.5258 -4.0079 -3.2065 13 8 0.3700 -4.1689 -3.5193 14 6 2.6262 -4.4177 -4.1512 15 6 2.0133 -5.0041 -5.4244 16 1 1.3403 -5.8200 -5.1612 17 6 1.2312 -3.9155 -6.1621 18 6 0.6177 -4.5020 -7.4351 19 6 1.7313 -5.0322 -8.3404 20 6 2.5135 -6.1207 -7.6028 21 6 3.1269 -5.5342 -6.3299 22 1 3.8001 -4.7185 -6.5934 23 8 3.8570 -6.5511 -5.6406 24 6 1.7343 -3.4682 1.2226 25 6 0.4255 -2.6968 1.4100 26 1 -0.4850 0.8401 0.0004 27 1 0.0976 -2.3561 -1.6675 28 1 0.1233 -3.9773 -0.9333 29 1 3.2291 -3.5463 -4.4065 30 1 3.2561 -5.1673 -3.6720 31 1 0.4375 -3.5381 -5.5172 32 1 1.9042 -3.0995 -6.4253 33 1 -0.0555 -5.3178 -7.1714 34 1 0.0601 -3.7266 -7.9603 35 1 1.2941 -5.4504 -9.2472 36 1 2.4045 -4.2164 -8.6040 37 1 1.8403 -6.9365 -7.3392 38 1 3.3065 -6.4987 -8.2479 39 1 4.5804 -6.9337 -6.1559 40 1 1.6639 -4.5342 1.0063 41 1 2.5874 -3.1670 1.8305 42 1 0.4183 -1.8883 2.1410 43 1 -0.5061 -3.2548 1.3170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330215871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = -141.310145 kcal Electronic energy + Delta-G solvation = -22756.867162 eV Core-core repulsion = 19380.779533 eV Total energy + Delta-G solvation = -3376.087628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13655 -38.90621 -36.76314 -35.69038 -35.12816 -32.72770 -31.94297 -29.80698 -27.86690 -26.24685 -25.12317 -22.83263 -21.94184 -21.13782 -20.10394 -19.74661 -19.21970 -17.38985 -16.94476 -16.44631 -15.74182 -15.37818 -15.32161 -14.70029 -14.52691 -14.09743 -14.01139 -13.56348 -13.30512 -13.05076 -12.82492 -12.24967 -12.17522 -11.99282 -11.58925 -11.55300 -11.44176 -11.06430 -10.97475 -10.83595 -10.78416 -10.54337 -10.48028 -10.36037 -10.24236 -9.96621 -9.84886 -9.70673 -9.44935 -8.79815 -8.45108 -8.18404 -6.05666 -4.10712 2.85935 3.28959 3.36013 3.39878 3.42262 4.02320 4.40025 4.48684 4.58533 4.82199 4.97220 5.07173 5.14855 5.21532 5.23863 5.26372 5.35503 5.38608 5.55356 5.64349 5.69226 5.81320 5.85733 5.94505 6.02325 6.05023 6.09685 6.13859 6.28368 6.35505 6.40239 6.41873 6.56872 6.70399 6.76831 7.05309 7.32852 7.39733 7.49171 7.52463 7.87577 8.39213 8.53416 8.90949 9.54938 11.03738 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.003953 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.804760 B = 7081.550794 C = 7509.248208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.116 3.884 11 O -0.339 6.339 12 C 0.454 3.546 13 O -0.524 6.524 14 C -0.109 4.109 15 C -0.064 4.064 16 H 0.085 0.915 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.149 4.149 21 C 0.109 3.891 22 H 0.057 0.943 23 O -0.565 6.565 24 C -0.205 4.205 25 C -0.145 4.145 26 H 0.261 0.739 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.375 0.625 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -10.357 -14.441 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.527 4.527 8 H 0.081 0.919 9 C 0.036 3.964 10 C 0.043 3.957 11 O -0.254 6.254 12 C 0.298 3.702 13 O -0.415 6.415 14 C -0.147 4.147 15 C -0.083 4.083 16 H 0.103 0.897 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.187 4.187 21 C 0.051 3.949 22 H 0.075 0.925 23 O -0.370 6.370 24 C -0.243 4.243 25 C -0.182 4.182 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.222 0.778 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.339 -10.102 -14.001 17.802 hybrid contribution 0.589 0.815 -0.465 1.108 sum 4.928 -9.287 -14.467 17.883 Atomic orbital electron populations 1.70006 1.05904 1.26646 1.49287 1.25010 0.94845 0.99049 0.94540 0.86596 0.79990 0.83289 0.78172 1.20648 1.21167 1.19719 1.20388 0.93099 0.88356 1.50812 0.91892 1.18782 0.98918 0.94198 0.84453 1.22863 0.85505 0.96808 0.90542 1.86524 1.41346 1.70617 1.26916 1.23586 0.90073 0.74384 0.82199 1.90562 1.22359 1.52525 1.76016 1.21351 0.96394 1.03166 0.93762 1.20929 0.95694 0.98734 0.92907 0.89669 1.21763 1.00589 0.96997 0.96747 1.21536 0.97580 1.00654 0.95906 1.21513 0.97776 0.98089 0.98170 1.22243 1.00392 0.99244 0.96838 1.21842 0.92581 0.89449 0.91053 0.92496 1.86552 1.49242 1.56114 1.45138 1.23008 0.98522 0.95739 1.07001 1.22530 0.92282 1.01206 1.02228 0.92944 0.90732 0.94435 0.88229 0.87303 0.89063 0.92121 0.91775 0.91803 0.91928 0.91902 0.91086 0.91883 0.77818 0.91562 0.90077 0.89440 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 12.88 55.43 0.71 -24.32 16 2 C 0.07 1.88 5.38 -17.82 -0.10 1.79 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.49 -13.47 8.77 -34.44 -0.30 -13.78 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.04 0.94 1.62 -155.66 -0.25 0.68 16 10 C 0.12 2.82 5.29 37.16 0.20 3.02 16 11 O -0.34 -7.62 10.16 -39.26 -0.40 -8.02 16 12 C 0.45 8.82 7.67 36.01 0.28 9.09 16 13 O -0.52 -11.08 13.72 -18.74 -0.26 -11.33 16 14 C -0.11 -1.59 5.21 -27.89 -0.15 -1.74 16 15 C -0.06 -0.82 1.58 -90.62 -0.14 -0.97 16 16 H 0.08 1.24 7.95 -51.93 -0.41 0.82 16 17 C -0.12 -1.57 4.94 -26.73 -0.13 -1.70 16 18 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 19 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 20 C -0.15 -1.26 5.54 -26.73 -0.15 -1.41 16 21 C 0.11 1.09 2.90 -26.73 -0.08 1.02 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 O -0.57 -5.72 12.56 -35.23 -0.44 -6.16 16 24 C -0.21 -4.58 9.96 -26.69 -0.27 -4.84 16 25 C -0.14 -3.42 9.37 -26.69 -0.25 -3.67 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.07 1.99 8.13 -51.93 -0.42 1.56 16 28 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.11 1.53 7.54 -51.92 -0.39 1.14 16 31 H 0.09 1.44 5.96 -51.93 -0.31 1.13 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 2.11 9.08 45.56 0.41 2.53 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 43 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -30.79 349.00 -8.39 -39.18 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.58 Total: 4.36 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.66 Total: -15.07 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.71 Total: -24.32 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.10 Total: -25.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.79 -8.39 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330215871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.134 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds