Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.46919 * 2 1 4 4 C 1.42901 * 113.99990 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47318 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47148 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46867 * 90.00451 * 18 16 14 20 20 H 1.48501 * 109.47216 * 210.00308 * 18 16 14 21 21 H 1.48499 * 109.47135 * 330.00649 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.08997 * 109.47144 * 60.00255 * 1 2 3 25 25 H 1.09001 * 109.47231 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47157 * 300.00334 * 1 2 3 27 27 H 1.08993 * 109.47213 * 239.99739 * 2 1 3 28 28 H 1.08999 * 109.46473 * 119.99434 * 2 1 3 29 29 H 1.08996 * 109.46942 * 59.99658 * 4 3 2 30 30 H 1.09000 * 109.46996 * 299.99554 * 4 3 2 31 31 H 1.09006 * 109.47270 * 60.00109 * 5 4 3 32 32 H 1.08997 * 109.47293 * 300.00258 * 5 4 3 33 33 H 1.08998 * 109.47402 * 60.00253 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99848 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3505 3.0592 0.0012 7 7 5.7283 4.4746 0.0011 8 6 6.5446 5.0774 0.8963 9 6 6.6166 6.3771 0.5253 10 6 7.4019 7.4675 1.2077 11 7 8.7073 7.6087 0.5581 12 6 9.5830 8.5334 0.9993 13 8 9.2913 9.2475 1.9405 14 6 10.8850 8.6786 0.3464 15 1 11.1438 8.0451 -0.4891 16 6 11.7947 9.6398 0.8045 17 7 11.4815 10.4066 1.8150 18 14 13.4566 9.8247 -0.0283 19 1 13.3500 10.8124 -1.1320 20 1 14.4572 10.2959 0.9627 21 1 13.8837 8.5128 -0.5775 22 7 5.8581 6.5023 -0.5694 23 7 5.3457 5.3573 -0.8541 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8340 0.9764 -0.8891 30 1 3.8332 0.9768 0.8909 31 1 3.4222 3.4225 0.8894 32 1 3.4230 3.4214 -0.8905 33 1 5.7541 2.5751 -0.8881 34 1 5.7525 2.5763 0.8918 35 1 7.0374 4.6151 1.7388 36 1 7.5443 7.2102 2.2574 37 1 6.8561 8.4081 1.1351 38 1 8.9398 7.0397 -0.1923 39 1 12.1117 11.0721 2.1326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330784637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = 3.932394 kcal Electronic energy + Delta-G solvation = -20702.139649 eV Core-core repulsion = 17261.102617 eV Total energy + Delta-G solvation = -3441.037032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.17166 -38.68254 -37.26187 -35.90810 -33.68926 -32.63408 -32.28781 -30.98773 -30.65126 -27.10699 -26.54788 -25.00930 -23.28696 -22.82359 -21.77508 -20.72553 -19.61998 -17.83392 -17.18516 -16.97242 -16.73108 -16.26738 -15.33453 -15.07592 -14.96984 -14.72760 -14.34071 -13.97853 -13.62915 -13.39716 -13.25893 -12.78118 -12.56545 -12.26782 -12.19902 -12.01781 -11.61967 -11.49415 -11.42897 -11.30302 -11.11283 -10.93061 -10.56262 -10.42248 -10.20374 -10.11636 -10.03178 -9.17603 -8.81436 -7.57076 -7.47065 -6.14711 -4.59772 1.62647 2.19461 2.64968 3.15181 3.17535 3.24115 3.27439 4.09304 4.15560 4.38046 4.43816 4.51201 4.55060 4.62589 4.66134 4.72238 4.81911 4.86625 4.88528 4.98917 5.18186 5.21583 5.30025 5.38129 5.44298 5.56168 5.64814 5.71366 5.86829 6.14048 6.46108 6.53686 6.58070 6.69901 7.47568 7.96063 8.11095 8.37084 8.63133 9.06469 9.56733 10.63656 10.82009 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.053814 B = 0.002225 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.189717 B =12581.855649 C =12777.276972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.068 3.932 5 C -0.134 4.134 6 C 0.122 3.878 7 N -0.298 5.298 8 C -0.039 4.039 9 C -0.017 4.017 10 C 0.216 3.784 11 N -0.761 5.761 12 C 0.556 3.444 13 O -0.580 6.580 14 C -0.544 4.544 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.908 3.092 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.266 1.266 22 N -0.253 5.253 23 N -0.089 5.089 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.192 0.808 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.381 0.619 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 -23.406 -2.412 27.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.307 6.307 4 C -0.009 4.009 5 C -0.172 4.172 6 C 0.001 3.999 7 N -0.092 5.092 8 C -0.190 4.190 9 C -0.155 4.155 10 C 0.090 3.910 11 N -0.418 5.418 12 C 0.361 3.639 13 O -0.463 6.463 14 C -0.581 4.581 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.190 1.190 22 N -0.121 5.121 23 N -0.069 5.069 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.209 0.791 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.278 -22.316 -2.826 27.767 hybrid contribution 1.693 -0.898 0.182 1.925 sum -14.585 -23.214 -2.645 27.543 Atomic orbital electron populations 1.21755 0.93565 1.02352 1.03343 1.22483 0.95803 0.83458 1.00160 1.87900 1.20605 1.26755 1.95456 1.22293 0.81976 0.96015 1.00664 1.21750 0.93189 0.96531 1.05753 1.21863 0.96603 0.76004 1.05464 1.47259 1.32141 1.10417 1.19345 1.23474 1.01188 0.94417 0.99923 1.22370 1.01955 0.94863 0.96354 1.19056 0.84420 0.93149 0.94423 1.46157 1.15055 1.42606 1.37948 1.18216 0.83994 0.78275 0.83464 1.90603 1.78518 1.46304 1.30902 1.20868 0.99166 1.20529 1.17525 0.91455 1.25698 0.99246 0.94276 0.93970 1.70016 1.34350 1.15159 1.20139 0.86376 0.81736 0.79178 0.79464 1.19730 1.20480 1.18985 1.75134 1.09701 1.13953 1.13302 1.78273 1.20716 0.93257 1.14620 0.91722 0.90990 0.91755 0.93253 0.93293 0.92713 0.92855 0.90031 0.88974 0.88163 0.87486 0.79142 0.91470 0.91406 0.78785 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.33 6.66 37.16 0.25 0.58 16 3 O -0.39 -3.25 10.34 -35.23 -0.36 -3.61 16 4 C 0.07 0.40 5.94 37.16 0.22 0.62 16 5 C -0.13 -0.98 5.71 -26.73 -0.15 -1.14 16 6 C 0.12 0.83 6.46 -4.05 -0.03 0.81 16 7 N -0.30 -3.58 3.44 -61.27 -0.21 -3.79 16 8 C -0.04 -0.51 11.50 -17.04 -0.20 -0.70 16 9 C -0.02 -0.30 6.61 -82.78 -0.55 -0.85 16 10 C 0.22 4.34 6.23 -5.19 -0.03 4.31 16 11 N -0.76 -17.68 5.54 -62.90 -0.35 -18.03 16 12 C 0.56 16.11 7.75 -12.99 -0.10 16.01 16 13 O -0.58 -18.96 15.02 5.20 0.08 -18.88 16 14 C -0.54 -15.62 9.54 -35.63 -0.34 -15.96 16 15 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 16 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -23.23 11.83 55.55 0.66 -22.58 16 18 Si 0.91 20.39 29.56 -169.99 -5.02 15.36 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 N -0.25 -4.68 12.41 33.29 0.41 -4.27 16 23 N -0.09 -1.42 12.92 60.35 0.78 -0.64 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.11 0.41 8.07 -51.93 -0.42 -0.01 16 35 H 0.19 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.38 8.12 8.44 -40.82 -0.34 7.78 16 39 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -37.80 342.95 -5.30 -43.10 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.80 Total: 2.52 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.64 Total: 5.66 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 1.29 Total: -49.31 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.29 Total: -22.50 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.80 -5.30 -43.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330784637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.034 kcal (2) G-P(sol) polarization free energy of solvation -37.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds