Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.46919 * 2 1 4 4 C 1.42901 * 113.99990 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47318 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47148 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46867 * 90.00451 * 18 16 14 20 20 H 1.48501 * 109.47216 * 210.00308 * 18 16 14 21 21 H 1.48499 * 109.47135 * 330.00649 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.08997 * 109.47144 * 60.00255 * 1 2 3 25 25 H 1.09001 * 109.47231 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47157 * 300.00334 * 1 2 3 27 27 H 1.08993 * 109.47213 * 239.99739 * 2 1 3 28 28 H 1.08999 * 109.46473 * 119.99434 * 2 1 3 29 29 H 1.08996 * 109.46942 * 59.99658 * 4 3 2 30 30 H 1.09000 * 109.46996 * 299.99554 * 4 3 2 31 31 H 1.09006 * 109.47270 * 60.00109 * 5 4 3 32 32 H 1.08997 * 109.47293 * 300.00258 * 5 4 3 33 33 H 1.08998 * 109.47402 * 60.00253 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99848 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3505 3.0592 0.0012 7 7 5.7283 4.4746 0.0011 8 6 6.5446 5.0774 0.8963 9 6 6.6166 6.3771 0.5253 10 6 7.4019 7.4675 1.2077 11 7 8.7073 7.6087 0.5581 12 6 9.5830 8.5334 0.9993 13 8 9.2913 9.2475 1.9405 14 6 10.8850 8.6786 0.3464 15 1 11.1438 8.0451 -0.4891 16 6 11.7947 9.6398 0.8045 17 7 11.4815 10.4066 1.8150 18 14 13.4566 9.8247 -0.0283 19 1 13.3500 10.8124 -1.1320 20 1 14.4572 10.2959 0.9627 21 1 13.8837 8.5128 -0.5775 22 7 5.8581 6.5023 -0.5694 23 7 5.3457 5.3573 -0.8541 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8340 0.9764 -0.8891 30 1 3.8332 0.9768 0.8909 31 1 3.4222 3.4225 0.8894 32 1 3.4230 3.4214 -0.8905 33 1 5.7541 2.5751 -0.8881 34 1 5.7525 2.5763 0.8918 35 1 7.0374 4.6151 1.7388 36 1 7.5443 7.2102 2.2574 37 1 6.8561 8.4081 1.1351 38 1 8.9398 7.0397 -0.1923 39 1 12.1117 11.0721 2.1326 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330784637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = -25.948746 kcal Electronic energy + Delta-G solvation = -20703.435392 eV Core-core repulsion = 17261.102617 eV Total energy + Delta-G solvation = -3442.332775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.30955 -39.37182 -39.16389 -36.81523 -35.41749 -34.47045 -33.36195 -32.19748 -31.53172 -28.96869 -27.33739 -26.76787 -23.70064 -23.55828 -22.91257 -21.93224 -21.50261 -19.38850 -18.41636 -17.67387 -17.46614 -17.34086 -17.06288 -16.23833 -16.02689 -15.92258 -15.62444 -15.31855 -15.10244 -14.48429 -14.17576 -13.90011 -13.73378 -13.44111 -13.14762 -13.04240 -12.82616 -12.69483 -12.65295 -12.58960 -12.50680 -12.00269 -11.98404 -11.95748 -11.75266 -11.10030 -10.91333 -10.56082 -10.43510 -9.79769 -9.49309 -8.27068 -6.83748 0.56994 1.31991 1.38123 1.42757 1.43931 1.59113 2.27878 2.48905 2.67898 3.17074 3.37344 3.57835 3.67435 3.84377 3.88435 4.00076 4.13700 4.17551 4.19667 4.28298 4.38085 4.46842 4.50335 4.50879 4.69603 4.84460 4.87797 4.97169 5.01630 5.03299 5.12651 5.26346 5.34025 5.63660 5.88361 6.17749 6.26955 6.27159 6.88548 7.45055 7.52592 8.49447 8.68718 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.053814 B = 0.002225 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.189717 B =12581.855649 C =12777.276972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 O -0.420 6.420 4 C 0.068 3.932 5 C -0.128 4.128 6 C 0.113 3.887 7 N -0.283 5.283 8 C -0.007 4.007 9 C -0.048 4.048 10 C 0.224 3.776 11 N -0.748 5.748 12 C 0.540 3.460 13 O -0.629 6.629 14 C -0.573 4.573 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.820 5.820 18 Si 0.998 3.002 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.249 1.249 22 N -0.297 5.297 23 N -0.107 5.107 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.150 0.850 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.391 0.609 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.825 -26.459 -2.888 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 O -0.340 6.340 4 C -0.009 4.009 5 C -0.166 4.166 6 C -0.006 4.006 7 N -0.076 5.076 8 C -0.159 4.159 9 C -0.186 4.186 10 C 0.098 3.902 11 N -0.403 5.403 12 C 0.345 3.655 13 O -0.517 6.517 14 C -0.609 4.609 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.449 5.449 18 Si 0.818 3.182 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.172 1.172 22 N -0.164 5.164 23 N -0.086 5.086 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.168 0.832 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.224 0.776 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.026 -25.442 -3.349 29.737 hybrid contribution 1.151 -0.075 0.343 1.203 sum -13.876 -25.517 -3.006 29.201 Atomic orbital electron populations 1.21795 0.93606 1.03329 1.02421 1.22649 0.95919 0.82575 1.01276 1.87862 1.22053 1.28409 1.95720 1.22374 0.81138 0.94842 1.02516 1.21648 0.93582 0.97590 1.03792 1.22416 0.96281 0.73168 1.08695 1.47673 1.30487 1.11726 1.17732 1.23936 0.99397 0.92770 0.99826 1.21952 1.03495 0.95833 0.97369 1.18895 0.82906 0.93377 0.95016 1.45825 1.15514 1.41199 1.37775 1.18580 0.85136 0.78676 0.83123 1.90556 1.79709 1.48406 1.32989 1.21403 0.99717 1.21523 1.18301 0.89665 1.26960 1.04134 0.93171 0.94326 1.70175 1.36564 1.16068 1.22117 0.85014 0.75157 0.79888 0.78179 1.18922 1.19512 1.17199 1.75067 1.11020 1.15755 1.14579 1.78185 1.21286 0.93302 1.15841 0.92709 0.89086 0.92599 0.92204 0.91984 0.91177 0.90534 0.91444 0.91578 0.86033 0.83194 0.74833 0.90703 0.94300 0.77572 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 2 C 0.05 0.50 6.66 71.98 0.48 0.98 16 3 O -0.42 -6.48 10.34 -148.98 -1.54 -8.02 16 4 C 0.07 0.63 5.94 71.98 0.43 1.05 16 5 C -0.13 -1.64 5.71 30.59 0.17 -1.47 16 6 C 0.11 1.12 6.46 86.38 0.56 1.68 16 7 N -0.28 -6.10 3.44 -347.75 -1.20 -7.30 16 8 C -0.01 -0.16 11.50 83.49 0.96 0.80 16 9 C -0.05 -1.61 6.61 41.60 0.28 -1.34 16 10 C 0.22 9.23 6.23 85.63 0.53 9.76 16 11 N -0.75 -35.32 5.54 -471.15 -2.61 -37.94 16 12 C 0.54 32.10 7.75 86.36 0.67 32.77 16 13 O -0.63 -42.75 15.02 -4.33 -0.06 -42.81 16 14 C -0.57 -33.12 9.54 24.83 0.24 -32.88 16 15 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 16 C 0.03 1.65 5.50 85.31 0.47 2.12 16 17 N -0.82 -50.62 11.83 21.84 0.26 -50.36 16 18 Si 1.00 41.39 29.56 68.60 2.03 43.41 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 N -0.30 -11.11 12.41 -48.60 -0.60 -11.72 16 23 N -0.11 -3.32 12.92 37.02 0.48 -2.84 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.15 0.30 8.07 -2.39 -0.02 0.28 16 35 H 0.24 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.39 16.69 8.44 -92.71 -0.78 15.91 16 39 H 0.28 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -86.81 342.95 2.54 -84.27 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.27 Total: 20.51 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 5.52 Total: 12.79 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -3.67 Total: -110.15 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -1.61 Total: -50.83 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -86.81 2.54 -84.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330784637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.318 kcal (2) G-P(sol) polarization free energy of solvation -86.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds