Wall clock time and date at job start Tue Mar 31 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33632 * 122.74783 * 2 1 4 4 S 1.76200 * 107.92324 * 179.97438 * 3 2 1 5 5 C 1.70976 * 90.28294 * 0.02562 * 4 3 2 6 6 C 1.50701 * 124.91763 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.46854 * 270.02237 * 6 5 4 8 8 C 1.53006 * 109.47074 * 179.97438 * 7 6 5 9 9 N 1.46903 * 109.47219 * 179.97438 * 8 7 6 10 10 C 1.46892 * 111.00235 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47486 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47153 * 54.99924 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00155 * 11 10 9 14 14 C 1.53000 * 109.47060 * 175.00243 * 11 10 9 15 15 C 1.50703 * 109.46801 * 184.99876 * 14 11 10 16 16 H 1.07998 * 120.00413 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99680 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00285 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99651 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47220 * 60.00221 * 19 17 15 21 21 H 1.48500 * 109.47168 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47296 * 300.00052 * 19 17 15 23 23 N 1.29028 * 110.16587 * 0.23580 * 5 4 3 24 24 H 1.08998 * 109.47159 * 89.97332 * 1 2 3 25 25 H 1.09003 * 109.47312 * 209.97168 * 1 2 3 26 26 H 1.08998 * 109.47543 * 329.97230 * 1 2 3 27 27 H 1.08007 * 126.04190 * 0.04382 * 3 2 1 28 28 H 1.08991 * 109.47179 * 150.02504 * 6 5 4 29 29 H 1.09001 * 109.46996 * 30.02177 * 6 5 4 30 30 H 1.09001 * 109.47714 * 59.99912 * 7 6 5 31 31 H 1.09001 * 109.47270 * 299.99772 * 7 6 5 32 32 H 1.08991 * 109.46963 * 60.00265 * 8 7 6 33 33 H 1.09001 * 109.46992 * 300.00072 * 8 7 6 34 34 H 1.00902 * 111.00150 * 303.95822 * 9 8 7 35 35 H 1.09000 * 109.46781 * 59.99783 * 10 9 8 36 36 H 1.09008 * 109.47124 * 300.00142 * 10 9 8 37 37 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 38 38 H 1.09000 * 109.46986 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 40 40 H 1.09002 * 109.47069 * 304.99600 * 14 11 10 41 41 H 1.08991 * 109.47625 * 64.99919 * 14 11 10 42 42 H 0.96998 * 119.99928 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6731 0.0007 5 6 3.5039 -0.9819 0.0002 6 6 4.4835 -2.1271 -0.0001 7 6 4.8154 -2.5138 -1.4426 8 6 5.8104 -3.6762 -1.4430 9 7 6.1287 -4.0479 -2.8281 10 6 7.0841 -5.1630 -2.8677 11 6 7.3909 -5.5204 -4.3233 12 1 7.7382 -4.6316 -4.8502 13 6 6.1230 -6.0496 -4.9966 14 6 8.4781 -6.5961 -4.3661 15 6 8.8675 -6.8601 -5.7978 16 1 8.3879 -6.3149 -6.5972 17 6 9.8368 -7.7970 -6.0870 18 7 10.4219 -8.4599 -5.1135 19 14 10.3200 -8.1237 -7.8616 20 1 10.8367 -6.8726 -8.4723 21 1 11.3750 -9.1679 -7.9032 22 1 9.1319 -8.5907 -8.6202 23 7 2.2199 -1.1083 -0.0054 24 1 -0.3633 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3634 0.8897 0.5142 27 1 1.8391 2.1308 0.0007 28 1 4.0431 -2.9820 0.5130 29 1 5.3958 -1.8250 0.5143 30 1 5.2558 -1.6590 -1.9559 31 1 3.9031 -2.8159 -1.9570 32 1 5.3705 -4.5311 -0.9297 33 1 6.7227 -3.3737 -0.9288 34 1 5.2909 -4.2706 -3.3444 35 1 6.6536 -6.0283 -2.3637 36 1 8.0054 -4.8702 -2.3638 37 1 5.3485 -5.2832 -4.9662 38 1 6.3415 -6.3038 -6.0338 39 1 5.7758 -6.9384 -4.4698 40 1 9.3504 -6.2534 -3.8095 41 1 8.0987 -7.5142 -3.9176 42 1 11.1036 -9.1193 -5.3170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331054021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:16 Heat of formation + Delta-G solvation = -10.048369 kcal Electronic energy + Delta-G solvation = -18735.253215 eV Core-core repulsion = 15839.903146 eV Total energy + Delta-G solvation = -2895.350069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84701 -38.64182 -36.60791 -34.92841 -33.67216 -31.88371 -29.09794 -28.54530 -27.93989 -26.36311 -24.37694 -23.20478 -22.30155 -20.67075 -20.57720 -18.56095 -18.51397 -17.14634 -16.63595 -16.28702 -16.03400 -15.81827 -15.52646 -15.18315 -14.63192 -14.42051 -14.23404 -13.98789 -13.70018 -13.58458 -13.32440 -13.28295 -12.95343 -12.77148 -12.69425 -12.55378 -12.33918 -12.21917 -12.19314 -11.90019 -11.74577 -11.45188 -11.06164 -10.92641 -10.60653 -10.51898 -10.36397 -9.61896 -9.33127 -8.16300 -6.25394 -0.25860 0.43830 0.81002 1.40844 1.43706 1.51323 1.78804 2.42951 3.02123 3.16809 3.33709 3.85515 4.03676 4.18530 4.25736 4.26753 4.33072 4.35197 4.43625 4.50326 4.54939 4.72938 4.75526 4.77187 4.82126 4.85659 4.88195 4.99337 5.04848 5.18745 5.22113 5.28428 5.36902 5.40210 5.49053 5.56648 5.81271 5.90516 6.11280 6.32705 6.51456 6.80315 6.90328 7.42562 8.95465 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042027 B = 0.002152 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.085831 B =13009.199010 C =13148.860510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 C -0.267 4.267 4 S 0.138 5.862 5 C 0.044 3.956 6 C -0.040 4.040 7 C -0.097 4.097 8 C 0.060 3.940 9 N -0.694 5.694 10 C 0.077 3.923 11 C -0.077 4.077 12 H 0.056 0.944 13 C -0.127 4.127 14 C 0.032 3.968 15 C -0.530 4.530 16 H 0.061 0.939 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.962 3.038 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.267 1.267 23 N -0.504 5.504 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.201 0.799 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.343 0.657 35 H 0.023 0.977 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.040 0.960 40 H -0.013 1.013 41 H -0.010 1.010 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.172 20.078 12.671 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.406 4.406 4 S 0.393 5.607 5 C -0.234 4.234 6 C -0.082 4.082 7 C -0.136 4.136 8 C -0.069 4.069 9 N -0.326 5.326 10 C -0.052 4.052 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.184 4.184 14 C -0.005 4.005 15 C -0.568 4.568 16 H 0.079 0.921 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.786 3.214 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.192 1.192 23 N -0.220 5.220 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.218 0.782 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.006 0.994 41 H 0.008 0.992 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.834 20.468 12.647 29.365 hybrid contribution -0.823 -1.336 -0.505 1.649 sum -17.657 19.132 12.141 28.727 Atomic orbital electron populations 1.20433 0.85577 1.04065 1.03549 1.20789 0.99594 0.86573 1.01927 1.27173 0.94994 1.04878 1.13539 1.83972 1.07469 1.01936 1.67311 1.27264 0.94027 0.99476 1.02599 1.20280 0.95897 0.93644 0.98337 1.21395 0.98594 0.98535 0.95126 1.21967 0.98971 0.96713 0.89274 1.60484 1.17586 1.40383 1.14127 1.21835 0.95721 0.91116 0.96521 1.21029 0.96044 0.97841 0.94638 0.92508 1.21654 0.96510 0.99783 1.00497 1.19005 0.92909 0.93089 0.95504 1.21616 1.20409 1.20934 0.93807 0.92121 1.25970 0.96438 0.96006 1.01706 1.70093 1.27349 1.26358 1.33765 0.85551 0.78031 0.77992 0.79780 1.19289 1.21039 1.19230 1.66165 1.05387 1.32998 1.17431 0.90134 0.91241 0.88574 0.78168 0.88708 0.87630 0.91051 0.92290 0.94818 0.90483 0.83804 0.95874 0.92214 0.91581 0.93612 0.94112 0.99424 0.99200 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.31 71.24 0.73 -0.20 16 2 C 0.04 0.77 6.74 41.52 0.28 1.05 16 3 C -0.27 -3.90 11.13 66.77 0.74 -3.16 16 4 S 0.14 2.14 23.18 -56.49 -1.31 0.83 16 5 C 0.04 0.85 6.64 88.52 0.59 1.44 16 6 C -0.04 -0.66 5.80 29.85 0.17 -0.49 16 7 C -0.10 -1.84 5.46 30.59 0.17 -1.68 16 8 C 0.06 1.32 5.69 86.30 0.49 1.81 16 9 N -0.69 -19.44 6.50 -513.89 -3.34 -22.78 16 10 C 0.08 2.67 5.14 86.30 0.44 3.11 16 11 C -0.08 -3.17 2.55 -10.79 -0.03 -3.19 16 12 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.13 -4.69 8.77 71.98 0.63 -4.06 16 14 C 0.03 1.73 4.45 29.85 0.13 1.86 16 15 C -0.53 -30.24 8.41 25.60 0.22 -30.03 16 16 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 17 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 18 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 19 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 N -0.50 -11.25 10.53 -179.40 -1.89 -13.14 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.69 8.12 -2.39 -0.02 0.67 16 27 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.34 9.03 6.99 -89.69 -0.63 8.40 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.07 1.97 6.68 -2.39 -0.02 1.96 16 38 H 0.04 1.83 6.95 -2.39 -0.02 1.81 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -67.66 357.03 1.16 -66.50 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.36 Total: 12.33 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 5.03 Total: -33.30 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -4.94 Total: -93.22 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.31 Total: 0.83 kcal Total: -67.66 1.16 -66.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331054021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.454 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds