Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99672 * 2 1 4 4 C 1.53006 * 109.46858 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 3 7 7 C 1.53002 * 109.47233 * 65.00509 * 5 4 3 8 8 N 1.46499 * 109.46840 * 185.00008 * 5 4 3 9 9 C 1.35307 * 125.87199 * 275.00306 * 8 5 4 10 10 C 1.35347 * 106.18010 * 180.02562 * 9 8 5 11 11 C 1.50701 * 126.75807 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.47060 * 94.99679 * 11 10 9 13 13 C 1.34780 * 120.00306 * 180.02562 * 12 11 10 14 14 O 1.21693 * 119.99743 * 359.97438 * 13 12 11 15 15 C 1.46371 * 120.00255 * 180.02562 * 13 12 11 16 16 H 1.08000 * 119.99837 * 359.97438 * 15 13 12 17 17 C 1.40049 * 119.99844 * 180.02562 * 15 13 12 18 18 N 1.30673 * 120.00144 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99778 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47614 * 89.99540 * 19 17 15 21 21 H 1.48508 * 109.46795 * 209.99649 * 19 17 15 22 22 H 1.48496 * 109.47223 * 329.99188 * 19 17 15 23 23 N 1.33777 * 106.49746 * 0.02562 * 10 9 8 24 24 N 1.28643 * 108.87842 * 359.73444 * 23 10 9 25 25 H 1.08999 * 109.47529 * 60.00109 * 1 2 3 26 26 H 1.09003 * 109.47220 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47231 * 300.00312 * 1 2 3 28 28 H 1.09002 * 109.47269 * 60.00199 * 3 2 1 29 29 H 1.09001 * 109.47412 * 299.99925 * 3 2 1 30 30 H 1.09002 * 109.46824 * 60.00164 * 4 3 2 31 31 H 1.08991 * 109.47210 * 300.00249 * 4 3 2 32 32 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 33 33 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 34 34 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 35 35 H 1.08003 * 126.91299 * 359.97323 * 9 8 5 36 36 H 1.08996 * 109.47381 * 214.99979 * 11 10 9 37 37 H 1.09004 * 109.46525 * 335.00110 * 11 10 9 38 38 H 0.97001 * 120.00249 * 0.02562 * 12 11 10 39 39 H 0.97000 * 120.00138 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0000 6 1 3.7672 3.1537 -0.8423 7 6 3.8077 3.2971 1.3068 8 7 5.6133 2.4689 -0.1198 9 6 6.4800 2.2741 0.9008 10 6 7.7135 2.2313 0.3452 11 6 9.0213 2.0324 1.0670 12 7 9.3849 0.6135 1.0367 13 6 10.5238 0.1970 1.6247 14 8 11.2505 0.9995 2.1804 15 6 10.8874 -1.2206 1.5940 16 1 10.2427 -1.9328 1.1004 17 6 12.0706 -1.6534 2.2054 18 7 12.8504 -0.7918 2.8030 19 14 12.5342 -3.4626 2.1668 20 1 13.3509 -3.7387 0.9577 21 1 13.3193 -3.7984 3.3818 22 1 11.3009 -4.2889 2.1304 23 7 7.5433 2.4004 -0.9709 24 7 6.2872 2.5331 -1.2145 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8574 0.6437 -0.8892 31 1 3.8567 0.6440 0.8908 32 1 2.7247 3.3816 1.3960 33 1 4.1981 2.7259 2.1491 34 1 4.2506 4.2931 1.3062 35 1 6.2367 2.1739 1.9483 36 1 9.7995 2.6174 0.5769 37 1 8.9184 2.3591 2.1019 38 1 8.8059 -0.0262 0.5935 39 1 13.6701 -1.0915 3.2262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331884117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = 8.672464 kcal Electronic energy + Delta-G solvation = -21388.423926 eV Core-core repulsion = 17947.592440 eV Total energy + Delta-G solvation = -3440.831487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.20162 -38.69047 -37.27964 -36.67082 -33.77313 -32.38765 -32.04350 -30.73501 -29.42623 -27.15858 -26.80368 -25.31745 -24.78432 -22.75342 -21.25577 -20.62742 -19.60363 -17.82706 -17.15736 -16.71143 -16.51596 -16.14097 -15.36099 -15.26325 -14.92826 -14.71577 -14.33952 -13.98431 -13.61666 -13.55935 -13.28868 -12.85133 -12.43589 -12.29395 -12.08061 -12.05452 -11.61613 -11.56036 -11.48013 -11.29808 -11.10207 -10.91067 -10.55098 -10.40665 -10.18880 -10.15765 -10.01204 -9.15290 -8.80097 -7.55794 -7.45569 -6.13492 -4.58333 1.63779 2.18720 2.66562 3.18839 3.25375 3.25928 3.28974 3.95868 4.16785 4.31734 4.37240 4.45189 4.59188 4.63709 4.66083 4.79773 4.88941 4.90827 4.98615 5.07592 5.09758 5.20261 5.23032 5.32258 5.34825 5.48137 5.61415 5.71062 5.88862 6.15458 6.47447 6.55443 6.59959 6.67129 7.48974 7.97643 8.12694 8.38690 8.65390 9.07846 9.58213 10.64931 10.83338 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.003163 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.760343 B = 8851.030963 C = 9832.998792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.114 0.886 7 C -0.170 4.170 8 N -0.293 5.293 9 C -0.037 4.037 10 C -0.018 4.018 11 C 0.216 3.784 12 N -0.761 5.761 13 C 0.557 3.443 14 O -0.581 6.581 15 C -0.543 4.543 16 H 0.067 0.933 17 C 0.087 3.913 18 N -0.769 5.769 19 Si 0.908 3.092 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 N -0.254 5.254 24 N -0.092 5.092 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.189 0.811 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.381 0.619 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.689 5.493 -2.657 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.132 0.868 7 C -0.228 4.228 8 N -0.087 5.087 9 C -0.188 4.188 10 C -0.156 4.156 11 C 0.090 3.910 12 N -0.417 5.417 13 C 0.361 3.639 14 O -0.464 6.464 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.733 3.267 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 N -0.121 5.121 24 N -0.071 5.071 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.212 0.788 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.941 6.175 -3.667 25.954 hybrid contribution -0.456 -1.097 0.887 1.483 sum -25.397 5.078 -2.780 26.049 Atomic orbital electron populations 1.22771 0.80567 1.03104 1.00049 1.87904 1.20024 1.27432 1.95430 1.22453 0.92637 0.85289 1.00741 1.21900 0.94179 0.95584 1.05564 1.21441 0.74309 0.97861 1.01732 0.86821 1.22299 1.03463 1.01471 0.95534 1.47411 1.08482 1.47108 1.05660 1.23346 0.89597 1.09252 0.96575 1.22352 0.96432 1.05900 0.90884 1.19047 0.87983 0.86918 0.97075 1.46155 1.27043 1.05305 1.63246 1.18212 0.78320 0.89678 0.77699 1.90601 1.51571 1.56181 1.48028 1.20866 1.07432 0.91732 1.37980 0.91455 1.25702 0.95516 0.98749 0.93234 1.70023 1.09628 1.34597 1.25490 0.86373 0.79083 0.83150 0.78136 1.19737 1.20497 1.18949 1.75124 1.06614 1.15374 1.14999 1.78289 0.99175 1.20136 1.09487 0.93923 0.89371 0.93918 0.92526 0.92760 0.89575 0.89581 0.89497 0.90615 0.90824 0.79390 0.91445 0.91522 0.78766 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.37 10.70 -35.23 -0.38 -3.75 16 3 C 0.07 0.41 5.69 37.16 0.21 0.62 16 4 C -0.13 -1.05 5.38 -26.73 -0.14 -1.19 16 5 C 0.15 1.13 3.32 -67.93 -0.23 0.91 16 6 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 7 C -0.17 -0.87 8.59 37.16 0.32 -0.55 16 8 N -0.29 -3.60 3.25 -54.76 -0.18 -3.78 16 9 C -0.04 -0.49 10.62 -17.05 -0.18 -0.67 16 10 C -0.02 -0.31 6.61 -82.78 -0.55 -0.85 16 11 C 0.22 4.38 6.23 -5.19 -0.03 4.35 16 12 N -0.76 -17.85 5.54 -62.90 -0.35 -18.20 16 13 C 0.56 16.20 7.75 -12.99 -0.10 16.10 16 14 O -0.58 -19.05 15.02 5.19 0.08 -18.97 16 15 C -0.54 -15.69 9.54 -35.63 -0.34 -16.03 16 16 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 17 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 18 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 19 Si 0.91 20.53 29.56 -169.99 -5.02 15.50 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 N -0.25 -4.72 12.41 33.29 0.41 -4.30 16 24 N -0.09 -1.48 13.17 60.35 0.79 -0.68 16 25 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.25 6.57 -51.93 -0.34 -0.09 16 33 H 0.07 0.39 7.17 -51.93 -0.37 0.02 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.19 1.88 7.30 -52.48 -0.38 1.50 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.38 8.25 8.44 -40.82 -0.34 7.91 16 39 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -37.79 336.65 -4.49 -42.29 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.56 Total: 3.18 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.02 Total: 6.35 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 1.34 Total: -49.67 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.30 Total: -22.72 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.79 -4.49 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331884117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.958 kcal (2) G-P(sol) polarization free energy of solvation -37.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds