Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99925 * 2 1 4 4 C 1.52996 * 109.47183 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47148 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46768 * 120.00068 * 18 16 14 21 21 H 1.48498 * 109.47283 * 240.00320 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.08994 * 109.47012 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47063 * 299.99786 * 1 2 3 26 26 H 1.08997 * 109.47462 * 59.99584 * 1 2 3 27 27 H 1.09008 * 109.46789 * 59.99921 * 3 2 1 28 28 H 1.08997 * 109.47337 * 300.00434 * 3 2 1 29 29 H 1.08996 * 109.46922 * 60.00131 * 4 3 2 30 30 H 1.09000 * 109.47186 * 299.99923 * 4 3 2 31 31 H 1.09006 * 109.47270 * 60.00237 * 5 4 3 32 32 H 1.08997 * 109.47293 * 300.00386 * 5 4 3 33 33 H 1.08998 * 109.47402 * 60.00253 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99848 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6829 2.4617 0.0013 7 7 6.2787 3.8000 0.0025 8 6 7.1804 4.2657 0.8976 9 6 7.4558 5.5383 0.5281 10 6 8.4034 6.4906 1.2111 11 7 9.7143 6.4254 0.5604 12 6 10.7250 7.2001 1.0018 13 8 10.5500 7.9500 1.9441 14 6 12.0331 7.1395 0.3479 15 1 12.1884 6.4742 -0.4886 16 6 13.0832 7.9449 0.8063 17 7 12.8953 8.7502 1.8180 18 14 14.7528 7.8670 -0.0278 19 1 14.7055 6.8832 -1.1393 20 1 15.0996 9.2064 -0.5673 21 1 15.7805 7.4497 0.9596 22 7 6.7257 5.7828 -0.5658 23 7 6.0393 4.7330 -0.8513 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6885 1.8464 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6440 0.8909 31 1 3.8357 3.1232 0.8913 32 1 3.8364 3.1237 -0.8886 33 1 6.0046 1.9213 -0.8889 34 1 6.0045 1.9205 0.8910 35 1 7.5949 3.7305 1.7391 36 1 8.5043 6.2128 2.2603 37 1 8.0125 7.5055 1.1400 38 1 9.8538 5.8279 -0.1909 39 1 13.6226 9.3077 2.1357 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333538608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = 2.306584 kcal Electronic energy + Delta-G solvation = -20677.519130 eV Core-core repulsion = 17236.411598 eV Total energy + Delta-G solvation = -3441.107532 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.16512 -38.54308 -37.27612 -36.32787 -33.92880 -33.06480 -32.30001 -30.70516 -29.33588 -27.06422 -26.78878 -25.01010 -24.47138 -22.03547 -21.77903 -20.73986 -19.62084 -17.62332 -16.98986 -16.96530 -16.78538 -16.25368 -15.44737 -15.36662 -15.15879 -14.78053 -14.47215 -13.97765 -13.61950 -13.40273 -13.24321 -12.81524 -12.44848 -12.29357 -12.12634 -11.96422 -11.60902 -11.52066 -11.35611 -11.24939 -11.09966 -10.94883 -10.56476 -10.43099 -10.17686 -10.17168 -10.01015 -9.17451 -8.82471 -7.57142 -7.47359 -6.15131 -4.59971 1.63973 2.25142 2.64716 3.15996 3.23198 3.24221 3.28976 4.08580 4.15416 4.25191 4.44593 4.52654 4.62087 4.63802 4.70286 4.85342 4.85978 4.91512 4.97304 5.04070 5.09203 5.18608 5.19884 5.30527 5.32474 5.54029 5.64477 5.72299 5.86719 6.14156 6.45840 6.53725 6.60582 6.63481 7.47532 7.95912 8.10940 8.37211 8.63327 9.06390 9.56440 10.63291 10.81684 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.054035 B = 0.002202 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.053835 B =12714.880480 C =12906.788507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.115 4.115 5 C -0.131 4.131 6 C 0.119 3.881 7 N -0.298 5.298 8 C -0.040 4.040 9 C -0.018 4.018 10 C 0.216 3.784 11 N -0.761 5.761 12 C 0.556 3.444 13 O -0.581 6.581 14 C -0.543 4.543 15 H 0.068 0.932 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.255 5.255 23 N -0.092 5.092 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.191 0.809 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.381 0.619 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.908 -18.439 -2.436 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.153 4.153 5 C -0.169 4.169 6 C -0.002 4.002 7 N -0.092 5.092 8 C -0.191 4.191 9 C -0.156 4.156 10 C 0.090 3.910 11 N -0.418 5.418 12 C 0.360 3.640 13 O -0.463 6.463 14 C -0.580 4.580 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 N -0.122 5.122 23 N -0.071 5.071 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.208 0.792 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.663 -17.522 -2.855 27.243 hybrid contribution 1.145 -0.599 0.194 1.307 sum -19.518 -18.121 -2.661 26.766 Atomic orbital electron populations 1.22751 0.80750 1.02878 1.00129 1.87856 1.19955 1.28013 1.95476 1.22512 0.93744 0.84730 1.00620 1.21400 0.93531 0.96374 1.04028 1.21774 0.92718 0.97790 1.04646 1.22048 0.94203 0.78485 1.05483 1.47347 1.29438 1.13135 1.19235 1.23481 0.98559 0.97041 0.99977 1.22365 1.02048 0.94814 0.96393 1.19051 0.82056 0.95522 0.94410 1.46158 1.09531 1.48231 1.37842 1.18226 0.83415 0.78854 0.83474 1.90602 1.83266 1.41628 1.30842 1.20907 0.94295 1.25423 1.17422 0.91398 1.25701 0.99850 0.93665 0.93983 1.70027 1.31828 1.17640 1.20180 0.86324 0.82001 0.78679 0.79785 1.18813 1.20153 1.20196 1.75125 1.06900 1.16924 1.13273 1.78245 1.21100 0.93045 1.14697 0.89518 0.93983 0.93953 0.93108 0.92950 0.90378 0.90527 0.90696 0.89648 0.88208 0.87536 0.79186 0.91494 0.91448 0.78776 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.11 10.70 -35.23 -0.38 -3.48 16 3 C 0.06 0.38 5.94 37.16 0.22 0.60 16 4 C -0.12 -0.61 5.58 -26.73 -0.15 -0.76 16 5 C -0.13 -0.81 5.34 -26.73 -0.14 -0.96 16 6 C 0.12 0.81 6.46 -4.05 -0.03 0.78 16 7 N -0.30 -3.53 3.44 -61.27 -0.21 -3.74 16 8 C -0.04 -0.51 11.50 -17.04 -0.20 -0.71 16 9 C -0.02 -0.31 6.61 -82.78 -0.55 -0.85 16 10 C 0.22 4.33 6.23 -5.19 -0.03 4.30 16 11 N -0.76 -17.67 5.54 -62.90 -0.35 -18.02 16 12 C 0.56 16.09 7.75 -12.99 -0.10 15.99 16 13 O -0.58 -18.94 15.02 5.20 0.08 -18.87 16 14 C -0.54 -15.62 9.54 -35.63 -0.34 -15.96 16 15 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 16 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -23.22 11.83 55.55 0.66 -22.57 16 18 Si 0.91 20.39 29.56 -169.99 -5.02 15.36 16 19 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 N -0.25 -4.65 12.41 33.29 0.41 -4.24 16 23 N -0.09 -1.42 12.91 60.35 0.78 -0.64 16 24 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.45 8.07 -51.93 -0.42 0.03 16 35 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.38 8.13 8.44 -40.82 -0.34 7.79 16 39 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -37.66 342.59 -4.97 -42.63 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.80 Total: 2.31 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.30 Total: 6.09 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 1.29 Total: -49.21 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.30 Total: -22.35 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.66 -4.97 -42.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333538608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.941 kcal (2) G-P(sol) polarization free energy of solvation -37.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds