Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99925 * 2 1 4 4 C 1.52996 * 109.47183 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47148 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47148 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46768 * 120.00068 * 18 16 14 21 21 H 1.48498 * 109.47283 * 240.00320 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.08994 * 109.47012 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47063 * 299.99786 * 1 2 3 26 26 H 1.08997 * 109.47462 * 59.99584 * 1 2 3 27 27 H 1.09008 * 109.46789 * 59.99921 * 3 2 1 28 28 H 1.08997 * 109.47337 * 300.00434 * 3 2 1 29 29 H 1.08996 * 109.46922 * 60.00131 * 4 3 2 30 30 H 1.09000 * 109.47186 * 299.99923 * 4 3 2 31 31 H 1.09006 * 109.47270 * 60.00237 * 5 4 3 32 32 H 1.08997 * 109.47293 * 300.00386 * 5 4 3 33 33 H 1.08998 * 109.47402 * 60.00253 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99848 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6829 2.4617 0.0013 7 7 6.2787 3.8000 0.0025 8 6 7.1804 4.2657 0.8976 9 6 7.4558 5.5383 0.5281 10 6 8.4034 6.4906 1.2111 11 7 9.7143 6.4254 0.5604 12 6 10.7250 7.2001 1.0018 13 8 10.5500 7.9500 1.9441 14 6 12.0331 7.1395 0.3479 15 1 12.1884 6.4742 -0.4886 16 6 13.0832 7.9449 0.8063 17 7 12.8953 8.7502 1.8180 18 14 14.7528 7.8670 -0.0278 19 1 14.7055 6.8832 -1.1393 20 1 15.0996 9.2064 -0.5673 21 1 15.7805 7.4497 0.9596 22 7 6.7257 5.7828 -0.5658 23 7 6.0393 4.7330 -0.8513 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6885 1.8464 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8567 0.6440 0.8909 31 1 3.8357 3.1232 0.8913 32 1 3.8364 3.1237 -0.8886 33 1 6.0046 1.9213 -0.8889 34 1 6.0045 1.9205 0.8910 35 1 7.5949 3.7305 1.7391 36 1 8.5043 6.2128 2.2603 37 1 8.0125 7.5055 1.1400 38 1 9.8538 5.8279 -0.1909 39 1 13.6226 9.3077 2.1357 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333538608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = -27.366031 kcal Electronic energy + Delta-G solvation = -20678.805831 eV Core-core repulsion = 17236.411598 eV Total energy + Delta-G solvation = -3442.394233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.29015 -39.36481 -39.02196 -37.11086 -35.53787 -34.51526 -34.00957 -32.18595 -30.01569 -28.91204 -27.34154 -26.77892 -25.13955 -22.90767 -22.64411 -21.90616 -21.49990 -19.37415 -18.16241 -17.68098 -17.43223 -17.26740 -17.04598 -16.18934 -16.08078 -15.97676 -15.79109 -15.70324 -15.14334 -14.52779 -14.17037 -13.91533 -13.72698 -13.47565 -13.09621 -12.96150 -12.76912 -12.72271 -12.66453 -12.56027 -12.43107 -12.00429 -11.96768 -11.86925 -11.66956 -11.04945 -10.92699 -10.64668 -10.42323 -9.79432 -9.49266 -8.27464 -6.83931 0.59151 1.33288 1.41952 1.42547 1.43091 1.60333 2.27705 2.48603 2.77897 3.18387 3.37924 3.56343 3.66217 3.77590 3.88394 4.06313 4.12802 4.19992 4.26996 4.37054 4.43260 4.50688 4.51965 4.60161 4.62393 4.74375 4.84467 4.87374 4.97352 5.04839 5.18522 5.25343 5.34122 5.66790 5.88292 6.17789 6.19312 6.27209 6.88489 7.46649 7.52337 8.49252 8.68545 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.054035 B = 0.002202 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.053835 B =12714.880480 C =12906.788507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.055 3.945 4 C -0.106 4.106 5 C -0.122 4.122 6 C 0.107 3.893 7 N -0.282 5.282 8 C -0.010 4.010 9 C -0.048 4.048 10 C 0.224 3.776 11 N -0.749 5.749 12 C 0.540 3.460 13 O -0.629 6.629 14 C -0.572 4.572 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.820 5.820 18 Si 0.998 3.002 19 H -0.249 1.249 20 H -0.270 1.270 21 H -0.265 1.265 22 N -0.298 5.298 23 N -0.105 5.105 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.144 0.856 35 H 0.233 0.767 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.391 0.609 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.397 -21.036 -2.943 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.021 4.021 4 C -0.144 4.144 5 C -0.161 4.161 6 C -0.011 4.011 7 N -0.075 5.075 8 C -0.162 4.162 9 C -0.186 4.186 10 C 0.098 3.902 11 N -0.403 5.403 12 C 0.345 3.655 13 O -0.516 6.516 14 C -0.609 4.609 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.449 5.449 18 Si 0.818 3.182 19 H -0.172 1.172 20 H -0.195 1.195 21 H -0.190 1.190 22 N -0.165 5.165 23 N -0.085 5.085 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.224 0.776 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.219 -20.177 -3.407 28.767 hybrid contribution 0.824 0.105 0.363 0.906 sum -19.396 -20.072 -3.044 28.078 Atomic orbital electron populations 1.22908 0.79668 1.03804 1.00722 1.87814 1.21312 1.28851 1.95606 1.22607 0.94407 0.84332 1.00792 1.21315 0.92778 0.95647 1.04688 1.21663 0.92475 0.98192 1.03734 1.22608 0.94210 0.76132 1.08190 1.47748 1.28217 1.13925 1.17625 1.23915 0.96918 0.95413 0.99939 1.21929 1.03116 0.96165 0.97412 1.18895 0.81059 0.95270 0.94978 1.45830 1.09889 1.46946 1.37666 1.18581 0.84857 0.78948 0.83130 1.90555 1.84387 1.43785 1.32910 1.21432 0.94948 1.26342 1.18189 0.89706 1.26956 1.04797 0.92479 0.94349 1.70180 1.33929 1.18693 1.22132 0.84965 0.75292 0.79167 0.78804 1.17238 1.19464 1.18989 1.75062 1.08199 1.18743 1.14479 1.78157 1.21222 0.93340 1.15752 0.88523 0.93326 0.93436 0.92771 0.93036 0.90060 0.89472 0.91036 0.91240 0.86611 0.83803 0.75105 0.90781 0.94248 0.77596 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.01 10.70 -148.98 -1.59 -7.60 16 3 C 0.06 0.61 5.94 71.98 0.43 1.03 16 4 C -0.11 -0.87 5.58 30.59 0.17 -0.70 16 5 C -0.12 -1.24 5.34 30.59 0.16 -1.07 16 6 C 0.11 1.07 6.46 86.38 0.56 1.63 16 7 N -0.28 -5.94 3.44 -347.75 -1.20 -7.14 16 8 C -0.01 -0.22 11.50 83.49 0.96 0.74 16 9 C -0.05 -1.59 6.61 41.60 0.28 -1.31 16 10 C 0.22 9.17 6.23 85.63 0.53 9.70 16 11 N -0.75 -35.30 5.54 -471.15 -2.61 -37.91 16 12 C 0.54 32.07 7.75 86.36 0.67 32.74 16 13 O -0.63 -42.66 15.02 -4.33 -0.06 -42.72 16 14 C -0.57 -33.12 9.54 24.83 0.24 -32.88 16 15 H 0.08 4.45 7.85 -2.91 -0.02 4.42 16 16 C 0.03 1.66 5.50 85.31 0.47 2.13 16 17 N -0.82 -50.58 11.83 21.84 0.26 -50.32 16 18 Si 1.00 41.44 29.56 68.60 2.03 43.47 16 19 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 N -0.30 -10.92 12.41 -48.60 -0.60 -11.52 16 23 N -0.11 -3.17 12.91 37.02 0.48 -2.69 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 33 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.14 0.45 8.07 -2.39 -0.02 0.43 16 35 H 0.23 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.39 16.71 8.44 -92.71 -0.78 15.92 16 39 H 0.28 15.27 8.29 -92.71 -0.77 14.50 16 Total: -1.00 -85.13 342.59 2.68 -82.45 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.27 Total: 20.50 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.71 Total: 13.49 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.67 Total: -109.58 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -1.66 Total: -50.32 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -85.13 2.68 -82.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333538608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.083 kcal (2) G-P(sol) polarization free energy of solvation -85.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds