Wall clock time and date at job start Tue Mar 31 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47421 * 2 1 4 4 O 1.42907 * 109.46910 * 119.99942 * 2 1 3 5 5 C 1.42901 * 113.99741 * 149.99766 * 4 2 1 6 6 C 1.52996 * 109.46882 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46768 * 60.00340 * 18 16 14 20 20 H 1.48498 * 109.47326 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47374 * 300.00617 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.08999 * 109.47206 * 300.00306 * 1 2 3 25 25 H 1.09007 * 109.47128 * 60.00121 * 1 2 3 26 26 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47206 * 239.99694 * 2 1 3 28 28 H 1.08996 * 109.47570 * 299.99928 * 3 2 1 29 29 H 1.08999 * 109.47180 * 59.99678 * 3 2 1 30 30 H 1.09004 * 109.47665 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47367 * 60.00305 * 5 4 2 32 32 H 1.08997 * 109.47462 * 300.00291 * 5 4 2 33 33 H 1.08998 * 109.47402 * 60.00298 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99892 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2659 -1.3246 0.9887 6 6 3.6759 -2.0081 2.2946 7 7 4.9675 -2.6749 2.1122 8 6 6.0706 -2.4885 2.8734 9 6 7.0268 -3.2943 2.3554 10 6 8.4422 -3.4470 2.8497 11 7 8.5192 -4.5879 3.7654 12 6 9.6968 -4.9203 4.3304 13 8 10.6951 -4.2695 4.0839 14 6 9.7750 -6.0639 5.2407 15 1 8.8890 -6.6417 5.4593 16 6 10.9988 -6.4096 5.8274 17 7 12.0707 -5.7109 5.5626 18 14 11.0983 -7.8686 6.9896 19 1 10.6831 -9.1013 6.2731 20 1 12.4942 -8.0226 7.4724 21 1 10.1968 -7.6416 8.1474 22 7 6.4667 -3.9326 1.3218 23 7 5.2462 -3.5435 1.2040 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 4.0200 -0.5875 0.7125 32 1 3.1808 -2.0707 0.1987 33 1 2.9220 -2.7452 2.5712 34 1 3.7612 -1.2616 3.0842 35 1 6.1690 -1.8277 3.7220 36 1 8.7442 -2.5399 3.3733 37 1 9.1067 -3.6157 2.0024 38 1 7.7235 -5.1069 3.9617 39 1 12.9182 -5.9501 5.9692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336879968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:06 Heat of formation + Delta-G solvation = 7.121377 kcal Electronic energy + Delta-G solvation = -20976.418041 eV Core-core repulsion = 17535.519294 eV Total energy + Delta-G solvation = -3440.898747 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.22749 -39.00869 -37.26306 -35.45370 -33.65743 -33.00936 -32.31082 -30.75943 -29.65633 -27.72086 -27.00409 -25.02976 -24.43499 -21.98098 -21.70034 -20.84354 -19.62847 -17.86836 -17.38953 -16.85039 -16.37951 -16.02301 -15.35384 -15.28385 -14.80311 -14.49023 -14.28796 -13.90412 -13.60172 -13.41443 -13.09768 -12.82229 -12.68125 -12.54166 -12.18224 -12.08767 -11.77720 -11.56789 -11.34512 -11.20994 -11.14155 -10.92195 -10.60428 -10.42232 -10.23779 -10.15364 -10.05334 -9.22337 -8.81045 -7.58117 -7.48346 -6.14968 -4.60161 1.56148 2.02955 2.60120 3.19208 3.23804 3.25988 3.26202 4.09858 4.15513 4.27664 4.42504 4.51724 4.55098 4.62675 4.70402 4.71177 4.90905 5.04797 5.07408 5.11886 5.16489 5.27019 5.29180 5.30761 5.36237 5.59511 5.67766 5.72257 5.85546 6.09990 6.43487 6.48233 6.53495 6.66542 7.47202 7.95178 8.10079 8.36317 8.57265 9.06033 9.55823 10.63193 10.81427 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.047729 B = 0.002403 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.498841 B =11649.249813 C =11873.798984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 C -0.177 4.177 4 O -0.380 6.380 5 C 0.053 3.947 6 C 0.122 3.878 7 N -0.297 5.297 8 C -0.035 4.035 9 C -0.017 4.017 10 C 0.216 3.784 11 N -0.762 5.762 12 C 0.557 3.443 13 O -0.581 6.581 14 C -0.544 4.544 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 N -0.251 5.251 23 N -0.093 5.093 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.193 0.807 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.381 0.619 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.301 12.509 -7.559 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 C -0.235 4.235 4 O -0.299 6.299 5 C -0.025 4.025 6 C 0.000 4.000 7 N -0.092 5.092 8 C -0.185 4.185 9 C -0.155 4.155 10 C 0.090 3.910 11 N -0.418 5.418 12 C 0.361 3.639 13 O -0.464 6.464 14 C -0.581 4.581 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 N -0.118 5.118 23 N -0.072 5.072 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.210 0.790 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.015 12.270 -8.760 26.682 hybrid contribution 0.002 -0.221 1.370 1.388 sum -22.013 12.049 -7.390 26.160 Atomic orbital electron populations 1.21871 0.93192 1.02953 1.02720 1.22136 0.95172 0.92422 0.87713 1.22317 1.01691 0.96589 1.02856 1.87827 1.35577 1.70111 1.36411 1.22599 0.86655 0.96525 0.96745 1.21707 0.81282 0.97901 0.99138 1.47130 1.11346 1.29060 1.21678 1.23498 0.86503 1.06768 1.01760 1.22386 0.99009 0.98205 0.95896 1.19061 0.86042 0.92103 0.93838 1.46161 1.12618 1.32673 1.50341 1.18205 0.80404 0.85040 0.80257 1.90603 1.34881 1.55566 1.65304 1.20830 0.95557 1.13455 1.28234 0.91491 1.25700 0.95145 0.96607 0.95762 1.70004 0.99544 1.34890 1.35240 0.86429 0.77685 0.81927 0.80657 1.19277 1.20580 1.19338 1.75131 0.99354 1.20474 1.16889 1.78277 1.11491 1.05549 1.11865 0.91640 0.91033 0.91796 0.91847 0.91392 0.91582 0.92408 0.92407 0.91226 0.87448 0.86793 0.78983 0.91417 0.91379 0.78761 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.56 37.15 0.36 -0.42 16 2 C 0.08 0.53 3.34 -26.74 -0.09 0.44 16 3 C -0.18 -1.00 9.53 37.15 0.35 -0.65 16 4 O -0.38 -3.06 9.99 -35.23 -0.35 -3.41 16 5 C 0.05 0.42 5.87 37.16 0.22 0.64 16 6 C 0.12 0.96 6.82 -4.05 -0.03 0.93 16 7 N -0.30 -3.59 3.44 -61.27 -0.21 -3.80 16 8 C -0.03 -0.44 11.50 -17.04 -0.20 -0.64 16 9 C -0.02 -0.29 6.61 -82.78 -0.55 -0.83 16 10 C 0.22 4.29 6.23 -5.19 -0.03 4.26 16 11 N -0.76 -17.58 5.54 -62.90 -0.35 -17.93 16 12 C 0.56 16.05 7.75 -12.99 -0.10 15.95 16 13 O -0.58 -18.90 15.02 5.20 0.08 -18.82 16 14 C -0.54 -15.58 9.54 -35.63 -0.34 -15.92 16 15 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 16 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 18 Si 0.91 20.38 29.56 -169.99 -5.02 15.35 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 N -0.25 -4.54 12.41 33.29 0.41 -4.13 16 23 N -0.09 -1.44 12.92 60.35 0.78 -0.66 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 31 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 32 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.19 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.38 8.08 8.44 -40.82 -0.34 7.74 16 39 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -36.53 341.72 -5.12 -41.65 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.75 Total: 3.01 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.50 Total: 6.13 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 1.29 Total: -49.06 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.27 Total: -22.23 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.53 -5.12 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336879968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.767 kcal (2) G-P(sol) polarization free energy of solvation -36.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds