Wall clock time and date at job start Tue Mar 31 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47421 * 2 1 4 4 O 1.42907 * 109.46910 * 119.99942 * 2 1 3 5 5 C 1.42901 * 113.99741 * 149.99766 * 4 2 1 6 6 C 1.52996 * 109.46882 * 179.97438 * 5 4 2 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46768 * 60.00340 * 18 16 14 20 20 H 1.48498 * 109.47326 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47374 * 300.00617 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.08999 * 109.47206 * 300.00306 * 1 2 3 25 25 H 1.09007 * 109.47128 * 60.00121 * 1 2 3 26 26 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47206 * 239.99694 * 2 1 3 28 28 H 1.08996 * 109.47570 * 299.99928 * 3 2 1 29 29 H 1.08999 * 109.47180 * 59.99678 * 3 2 1 30 30 H 1.09004 * 109.47665 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47367 * 60.00305 * 5 4 2 32 32 H 1.08997 * 109.47462 * 300.00291 * 5 4 2 33 33 H 1.08998 * 109.47402 * 60.00298 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99892 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 3.2659 -1.3246 0.9887 6 6 3.6759 -2.0081 2.2946 7 7 4.9675 -2.6749 2.1122 8 6 6.0706 -2.4885 2.8734 9 6 7.0268 -3.2943 2.3554 10 6 8.4422 -3.4470 2.8497 11 7 8.5192 -4.5879 3.7654 12 6 9.6968 -4.9203 4.3304 13 8 10.6951 -4.2695 4.0839 14 6 9.7750 -6.0639 5.2407 15 1 8.8890 -6.6417 5.4593 16 6 10.9988 -6.4096 5.8274 17 7 12.0707 -5.7109 5.5626 18 14 11.0983 -7.8686 6.9896 19 1 10.6831 -9.1013 6.2731 20 1 12.4942 -8.0226 7.4724 21 1 10.1968 -7.6416 8.1474 22 7 6.4667 -3.9326 1.3218 23 7 5.2462 -3.5435 1.2040 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 4.0200 -0.5875 0.7125 32 1 3.1808 -2.0707 0.1987 33 1 2.9220 -2.7452 2.5712 34 1 3.7612 -1.2616 3.0842 35 1 6.1690 -1.8277 3.7220 36 1 8.7442 -2.5399 3.3733 37 1 9.1067 -3.6157 2.0024 38 1 7.7235 -5.1069 3.9617 39 1 12.9182 -5.9501 5.9692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336879968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:06 Heat of formation + Delta-G solvation = -21.161274 kcal Electronic energy + Delta-G solvation = -20977.644468 eV Core-core repulsion = 17535.519294 eV Total energy + Delta-G solvation = -3442.125175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.36774 -39.59489 -39.34076 -36.50467 -35.30765 -34.45823 -33.68208 -32.23216 -30.50962 -28.91721 -28.13815 -26.80181 -25.25894 -22.99424 -22.34646 -22.08109 -21.56367 -19.37857 -18.52821 -17.84350 -17.41111 -17.29311 -16.70517 -16.24618 -15.98520 -15.92958 -15.78217 -15.16741 -14.86969 -14.53219 -14.16094 -13.79889 -13.64999 -13.39257 -13.25325 -13.11567 -13.02090 -12.80759 -12.67011 -12.60494 -12.55406 -12.27190 -12.03654 -11.83636 -11.69388 -11.18061 -10.89737 -10.68462 -10.47098 -9.80502 -9.49374 -8.26863 -6.83510 0.50343 1.16927 1.29896 1.42749 1.45769 1.57530 2.28007 2.49017 2.64313 3.13749 3.35748 3.53579 3.65721 3.70532 3.85422 3.97217 4.08596 4.12598 4.14107 4.24752 4.26576 4.49161 4.54737 4.72802 4.73647 4.84471 4.87240 4.93246 4.94427 5.02298 5.25933 5.30663 5.33972 5.55104 5.88418 6.09014 6.17712 6.27051 6.88642 7.39622 7.52422 8.49506 8.68712 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.047729 B = 0.002403 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.498841 B =11649.249813 C =11873.798984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.175 4.175 4 O -0.388 6.388 5 C 0.058 3.942 6 C 0.115 3.885 7 N -0.282 5.282 8 C -0.003 4.003 9 C -0.045 4.045 10 C 0.224 3.776 11 N -0.749 5.749 12 C 0.541 3.459 13 O -0.629 6.629 14 C -0.573 4.573 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.820 5.820 18 Si 0.998 3.002 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.253 1.253 22 N -0.291 5.291 23 N -0.106 5.106 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.120 0.880 34 H 0.147 0.853 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.391 0.609 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.490 12.624 -6.224 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.232 4.232 4 O -0.307 6.307 5 C -0.020 4.020 6 C -0.004 4.004 7 N -0.077 5.077 8 C -0.155 4.155 9 C -0.183 4.183 10 C 0.098 3.902 11 N -0.404 5.404 12 C 0.346 3.654 13 O -0.517 6.517 14 C -0.609 4.609 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.449 5.449 18 Si 0.817 3.183 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.176 1.176 22 N -0.158 5.158 23 N -0.085 5.085 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.224 0.776 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.295 12.395 -7.461 28.276 hybrid contribution 0.547 -0.145 0.882 1.048 sum -23.748 12.250 -6.579 27.519 Atomic orbital electron populations 1.21879 0.92270 1.02923 1.03450 1.22333 0.95952 0.92714 0.87258 1.22299 1.01268 0.96167 1.03463 1.87811 1.35403 1.70244 1.37257 1.22476 0.86852 0.96218 0.96458 1.22113 0.79509 0.98761 1.00046 1.47423 1.12391 1.27683 1.20192 1.23934 0.85178 1.04938 1.01431 1.21942 0.98331 1.00785 0.97276 1.18910 0.88109 0.90937 0.92260 1.45829 1.11402 1.33359 1.49792 1.18556 0.81132 0.85133 0.80610 1.90557 1.36921 1.57115 1.67060 1.21369 0.96887 1.13937 1.28748 0.89695 1.26960 0.94209 1.00042 0.97421 1.70167 1.00553 1.37358 1.36823 0.85068 0.78251 0.76989 0.77949 1.18209 1.19780 1.17643 1.75073 1.00608 1.22044 1.18095 1.78201 1.10537 1.06691 1.13065 0.91750 0.89487 0.92198 0.91789 0.90108 0.91684 0.93022 0.92475 0.92415 0.86232 0.83500 0.74888 0.90651 0.94066 0.77568 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.56 71.98 0.69 -0.61 16 2 C 0.07 0.84 3.34 30.59 0.10 0.95 16 3 C -0.17 -1.69 9.53 71.98 0.69 -1.00 16 4 O -0.39 -5.51 9.99 -148.98 -1.49 -7.00 16 5 C 0.06 0.82 5.87 71.98 0.42 1.24 16 6 C 0.12 1.47 6.82 86.38 0.59 2.06 16 7 N -0.28 -6.15 3.44 -347.75 -1.20 -7.34 16 8 C 0.00 -0.07 11.50 83.49 0.96 0.89 16 9 C -0.05 -1.48 6.61 41.60 0.28 -1.21 16 10 C 0.22 9.06 6.23 85.63 0.53 9.59 16 11 N -0.75 -35.06 5.54 -471.15 -2.61 -37.67 16 12 C 0.54 31.97 7.75 86.36 0.67 32.64 16 13 O -0.63 -42.51 15.02 -4.33 -0.06 -42.58 16 14 C -0.57 -33.02 9.54 24.83 0.24 -32.78 16 15 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 16 C 0.03 1.63 5.50 85.31 0.47 2.10 16 17 N -0.82 -50.51 11.83 21.84 0.26 -50.26 16 18 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 22 N -0.29 -10.55 12.41 -48.60 -0.60 -11.15 16 23 N -0.11 -3.19 12.92 37.02 0.48 -2.71 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.71 7.79 -2.39 -0.02 0.69 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 31 H 0.06 0.82 7.87 -2.38 -0.02 0.80 16 32 H 0.06 0.95 8.06 -2.39 -0.02 0.93 16 33 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.15 0.98 8.07 -2.39 -0.02 0.96 16 35 H 0.23 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.39 16.57 8.44 -92.71 -0.78 15.79 16 39 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -82.10 341.72 2.71 -79.40 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.27 Total: 22.05 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 5.63 Total: 13.87 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.67 Total: -109.13 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -1.55 Total: -49.58 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -82.10 2.71 -79.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336879968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.238 kcal (2) G-P(sol) polarization free energy of solvation -82.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds