Wall clock time and date at job start Tue Mar 31 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.50672 * 2 1 4 4 O 1.43367 * 109.63597 * 120.31831 * 2 1 3 5 5 C 1.44184 * 107.29109 * 119.21188 * 4 2 1 6 6 C 1.54913 * 103.07789 * 338.56153 * 5 4 2 7 7 H 1.09002 * 110.97974 * 277.45628 * 6 5 4 8 8 C 1.53003 * 110.97804 * 153.70845 * 6 5 4 9 9 N 1.46498 * 109.47106 * 178.11603 * 8 6 5 10 10 C 1.35316 * 125.87012 * 124.71533 * 9 8 6 11 11 C 1.35347 * 106.17531 * 179.90430 * 10 9 8 12 12 C 1.50696 * 126.75107 * 180.12420 * 11 10 9 13 13 N 1.46504 * 109.46983 * 95.24537 * 12 11 10 14 14 C 1.36938 * 119.99875 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00273 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99786 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00207 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47004 * 89.99843 * 18 16 14 20 20 H 1.48494 * 109.47174 * 209.99978 * 18 16 14 21 21 H 1.48511 * 109.46957 * 329.99876 * 18 16 14 22 22 N 1.33776 * 106.49856 * 0.35362 * 11 10 9 23 23 N 1.28631 * 108.88413 * 359.77152 * 22 11 10 24 24 O 1.43755 * 109.63389 * 239.68299 * 2 1 3 25 25 H 1.09002 * 109.46879 * 301.13651 * 1 2 3 26 26 H 1.08996 * 109.47134 * 61.13876 * 1 2 3 27 27 H 1.08998 * 109.46773 * 181.14057 * 1 2 3 28 28 H 1.09000 * 109.46985 * 178.86379 * 3 2 1 29 29 H 1.09001 * 109.47310 * 298.86333 * 3 2 1 30 30 H 1.08995 * 109.47033 * 58.86256 * 3 2 1 31 31 H 1.09011 * 110.69378 * 220.17099 * 5 4 2 32 32 H 1.08994 * 110.84797 * 97.03210 * 5 4 2 33 33 H 1.08997 * 109.46712 * 298.11477 * 8 6 5 34 34 H 1.09000 * 109.47048 * 58.10986 * 8 6 5 35 35 H 1.08001 * 126.90844 * 0.02562 * 10 9 8 36 36 H 1.09000 * 109.47447 * 215.24613 * 12 11 10 37 37 H 1.08998 * 109.47146 * 335.24798 * 12 11 10 38 38 H 0.96996 * 120.00137 * 0.02562 * 13 12 11 39 39 H 0.96999 * 120.00017 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0118 -0.6816 1.1656 5 6 2.7886 -1.8087 0.7126 6 6 2.2653 -2.0391 -0.7272 7 1 1.3458 -2.6244 -0.7192 8 6 3.3308 -2.7099 -1.5965 9 7 2.7871 -2.9526 -2.9350 10 6 3.3291 -2.5279 -4.0999 11 6 2.5095 -2.9721 -5.0811 12 6 2.6805 -2.7608 -6.5634 13 7 3.3585 -3.9209 -7.1471 14 6 3.6245 -3.9544 -8.4899 15 1 3.3341 -3.1258 -9.1189 16 6 4.2665 -5.0538 -9.0431 17 7 4.6200 -6.0638 -8.2767 18 14 4.6288 -5.0999 -10.8751 19 1 5.9646 -4.5038 -11.1306 20 1 4.6166 -6.5079 -11.3468 21 1 3.5930 -4.3246 -11.6041 22 7 1.5151 -3.6314 -4.4761 23 7 1.7088 -3.6017 -3.2048 24 8 2.0130 -0.6835 -1.1688 25 1 -0.3633 0.5314 0.8796 26 1 -0.3633 0.4960 -0.9000 27 1 -0.3633 -1.0275 0.0205 28 1 3.1307 1.4416 0.0204 29 1 1.6946 1.9504 -0.9000 30 1 1.6613 1.9621 0.8796 31 1 2.5989 -2.6827 1.3358 32 1 3.8516 -1.5681 0.7022 33 1 4.2018 -2.0588 -1.6706 34 1 3.6234 -3.6581 -1.1456 35 1 4.2346 -1.9521 -4.2222 36 1 1.7021 -2.6398 -7.0284 37 1 3.2780 -1.8658 -6.7362 38 1 3.6190 -4.6652 -6.5823 39 1 5.0689 -6.8319 -8.6632 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336894983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:20 Heat of formation + Delta-G solvation = 26.349416 kcal Electronic energy + Delta-G solvation = -21992.410069 eV Core-core repulsion = 18552.345113 eV Total energy + Delta-G solvation = -3440.064957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.92816 -41.04750 -35.99355 -35.15084 -34.50670 -33.01640 -31.78466 -30.24054 -29.73468 -27.83132 -26.65963 -25.72871 -23.12571 -22.70932 -21.58971 -21.51144 -20.42542 -18.11986 -17.38380 -16.81328 -16.77835 -16.33210 -15.55557 -15.13964 -14.61652 -14.54177 -14.29887 -13.93915 -13.63161 -13.34006 -13.29408 -12.99714 -12.71033 -12.61440 -12.57069 -12.46631 -12.12983 -12.00028 -11.74130 -11.22699 -10.87609 -10.78328 -10.65565 -10.40728 -10.11772 -10.06432 -9.84696 -9.67834 -8.85538 -8.78424 -6.88569 -5.71289 -3.00672 1.86620 2.35240 2.82116 2.96690 3.41675 3.47536 3.52610 3.54878 3.86959 4.18388 4.25634 4.44382 4.50885 4.59880 4.65922 4.71393 4.77930 4.90244 5.12182 5.19985 5.24018 5.28798 5.33429 5.38430 5.49149 5.52290 5.67184 5.70251 5.78899 5.87444 6.21319 6.45429 6.64870 6.70846 6.78018 6.83195 7.73887 8.46145 8.87644 9.57864 10.13964 10.50136 11.51602 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041169 B = 0.002976 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.967094 B = 9406.544342 C = 9597.153067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.250 3.750 3 C -0.154 4.154 4 O -0.376 6.376 5 C 0.031 3.969 6 C 0.033 3.967 7 H 0.104 0.896 8 C 0.129 3.871 9 N -0.298 5.298 10 C -0.035 4.035 11 C -0.006 4.006 12 C 0.233 3.767 13 N -0.726 5.726 14 C -0.239 4.239 15 H 0.073 0.927 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 N -0.251 5.251 23 N -0.098 5.098 24 O -0.361 6.361 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.188 0.812 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 13.316 22.287 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.174 3.826 3 C -0.211 4.211 4 O -0.297 6.297 5 C -0.046 4.046 6 C -0.026 4.026 7 H 0.122 0.878 8 C 0.007 3.993 9 N -0.092 5.092 10 C -0.185 4.185 11 C -0.144 4.144 12 C 0.104 3.896 13 N -0.371 5.371 14 C -0.370 4.370 15 H 0.091 0.909 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.207 1.207 22 N -0.119 5.119 23 N -0.077 5.077 24 O -0.282 6.282 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.205 0.795 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.219 0.781 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.727 12.743 22.704 26.301 hybrid contribution 1.345 0.099 -1.091 1.735 sum -2.382 12.843 21.613 25.253 Atomic orbital electron populations 1.22379 0.93507 1.03610 1.03434 1.23431 0.93264 0.91448 0.74488 1.22073 1.02456 0.93174 1.03404 1.88910 1.69486 1.41726 1.29565 1.24114 0.96781 0.90252 0.93452 1.24291 0.99603 0.85647 0.93014 0.87806 1.21952 0.96009 1.02656 0.78685 1.47022 1.18197 1.36496 1.07446 1.23379 1.03423 1.07206 0.84536 1.22439 0.93044 1.00288 0.98615 1.18940 0.96726 0.91918 0.82021 1.42313 1.69755 1.18422 1.06594 1.19243 1.31247 1.02124 0.84357 0.90882 1.24758 1.01600 0.96668 0.97964 1.69683 1.46024 1.08172 1.34253 0.86153 0.78022 0.76732 0.85061 1.21759 1.21812 1.20661 1.75076 1.22410 1.17007 0.97381 1.78185 1.02821 1.15039 1.11634 1.89358 1.85993 1.20880 1.31965 0.90654 0.90389 0.91655 0.91399 0.90470 0.90395 0.87498 0.90029 0.86689 0.86514 0.79504 0.94343 0.94474 0.78120 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.19 37.16 0.34 -1.13 16 2 C 0.25 2.33 1.47 -26.73 -0.04 2.29 16 3 C -0.15 -1.17 9.24 37.16 0.34 -0.83 16 4 O -0.38 -3.46 10.87 -59.04 -0.64 -4.10 16 5 C 0.03 0.21 7.54 38.17 0.29 0.49 16 6 C 0.03 0.29 3.56 -25.72 -0.09 0.20 16 7 H 0.10 1.04 8.04 -51.93 -0.42 0.62 16 8 C 0.13 1.12 6.22 -4.04 -0.03 1.10 16 9 N -0.30 -4.26 3.44 -61.26 -0.21 -4.47 16 10 C -0.03 -0.55 11.50 -17.05 -0.20 -0.75 16 11 C -0.01 -0.12 6.61 -82.78 -0.55 -0.67 16 12 C 0.23 5.05 6.82 -5.19 -0.04 5.01 16 13 N -0.73 -19.35 5.59 -61.08 -0.34 -19.69 16 14 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 15 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 18 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 N -0.25 -5.26 12.41 33.29 0.41 -4.85 16 23 N -0.10 -1.75 12.86 60.35 0.78 -0.97 16 24 O -0.36 -4.00 10.73 -59.04 -0.63 -4.63 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.40 8.03 -51.93 -0.42 -0.02 16 33 H 0.11 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.39 11.04 7.66 -40.82 -0.31 10.72 16 39 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -35.94 334.90 -5.86 -41.80 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.76 Total: 4.22 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.21 Total: -1.78 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 1.36 Total: -58.26 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.27 Total: -8.73 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.94 -5.86 -41.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336894983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.149 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds