Wall clock time and date at job start Tue Mar 31 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.50672 * 2 1 4 4 O 1.43367 * 109.63597 * 120.31831 * 2 1 3 5 5 C 1.44184 * 107.29109 * 119.21188 * 4 2 1 6 6 C 1.54913 * 103.07789 * 338.56153 * 5 4 2 7 7 H 1.09002 * 110.97974 * 277.45628 * 6 5 4 8 8 C 1.53003 * 110.97804 * 153.70845 * 6 5 4 9 9 N 1.46498 * 109.47106 * 178.11603 * 8 6 5 10 10 C 1.35316 * 125.87012 * 124.71533 * 9 8 6 11 11 C 1.35347 * 106.17531 * 179.90430 * 10 9 8 12 12 C 1.50696 * 126.75107 * 180.12420 * 11 10 9 13 13 N 1.46504 * 109.46983 * 95.24537 * 12 11 10 14 14 C 1.36938 * 119.99875 * 180.02562 * 13 12 11 15 15 H 1.08006 * 120.00273 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00024 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99786 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00207 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47004 * 89.99843 * 18 16 14 20 20 H 1.48494 * 109.47174 * 209.99978 * 18 16 14 21 21 H 1.48511 * 109.46957 * 329.99876 * 18 16 14 22 22 N 1.33776 * 106.49856 * 0.35362 * 11 10 9 23 23 N 1.28631 * 108.88413 * 359.77152 * 22 11 10 24 24 O 1.43755 * 109.63389 * 239.68299 * 2 1 3 25 25 H 1.09002 * 109.46879 * 301.13651 * 1 2 3 26 26 H 1.08996 * 109.47134 * 61.13876 * 1 2 3 27 27 H 1.08998 * 109.46773 * 181.14057 * 1 2 3 28 28 H 1.09000 * 109.46985 * 178.86379 * 3 2 1 29 29 H 1.09001 * 109.47310 * 298.86333 * 3 2 1 30 30 H 1.08995 * 109.47033 * 58.86256 * 3 2 1 31 31 H 1.09011 * 110.69378 * 220.17099 * 5 4 2 32 32 H 1.08994 * 110.84797 * 97.03210 * 5 4 2 33 33 H 1.08997 * 109.46712 * 298.11477 * 8 6 5 34 34 H 1.09000 * 109.47048 * 58.10986 * 8 6 5 35 35 H 1.08001 * 126.90844 * 0.02562 * 10 9 8 36 36 H 1.09000 * 109.47447 * 215.24613 * 12 11 10 37 37 H 1.08998 * 109.47146 * 335.24798 * 12 11 10 38 38 H 0.96996 * 120.00137 * 0.02562 * 13 12 11 39 39 H 0.96999 * 120.00017 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0118 -0.6816 1.1656 5 6 2.7886 -1.8087 0.7126 6 6 2.2653 -2.0391 -0.7272 7 1 1.3458 -2.6244 -0.7192 8 6 3.3308 -2.7099 -1.5965 9 7 2.7871 -2.9526 -2.9350 10 6 3.3291 -2.5279 -4.0999 11 6 2.5095 -2.9721 -5.0811 12 6 2.6805 -2.7608 -6.5634 13 7 3.3585 -3.9209 -7.1471 14 6 3.6245 -3.9544 -8.4899 15 1 3.3341 -3.1258 -9.1189 16 6 4.2665 -5.0538 -9.0431 17 7 4.6200 -6.0638 -8.2767 18 14 4.6288 -5.0999 -10.8751 19 1 5.9646 -4.5038 -11.1306 20 1 4.6166 -6.5079 -11.3468 21 1 3.5930 -4.3246 -11.6041 22 7 1.5151 -3.6314 -4.4761 23 7 1.7088 -3.6017 -3.2048 24 8 2.0130 -0.6835 -1.1688 25 1 -0.3633 0.5314 0.8796 26 1 -0.3633 0.4960 -0.9000 27 1 -0.3633 -1.0275 0.0205 28 1 3.1307 1.4416 0.0204 29 1 1.6946 1.9504 -0.9000 30 1 1.6613 1.9621 0.8796 31 1 2.5989 -2.6827 1.3358 32 1 3.8516 -1.5681 0.7022 33 1 4.2018 -2.0588 -1.6706 34 1 3.6234 -3.6581 -1.1456 35 1 4.2346 -1.9521 -4.2222 36 1 1.7021 -2.6398 -7.0284 37 1 3.2780 -1.8658 -6.7362 38 1 3.6190 -4.6652 -6.5823 39 1 5.0689 -6.8319 -8.6632 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336894983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:20 Heat of formation + Delta-G solvation = -0.660090 kcal Electronic energy + Delta-G solvation = -21993.581290 eV Core-core repulsion = 18552.345113 eV Total energy + Delta-G solvation = -3441.236177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.22211 -41.71861 -37.11315 -36.42625 -35.68989 -33.98396 -33.53040 -31.62788 -30.91877 -28.45720 -27.70601 -27.27215 -24.79721 -23.83964 -22.76020 -22.25126 -21.70620 -19.35531 -18.84259 -18.00679 -17.60362 -17.25588 -16.62541 -16.28636 -15.92189 -15.73903 -15.61578 -15.10568 -14.92881 -14.49543 -14.36830 -13.95016 -13.87187 -13.70901 -13.25521 -13.18991 -13.14251 -13.01575 -12.78475 -12.76055 -12.52158 -12.46347 -12.08679 -11.88054 -11.79314 -11.31725 -11.02086 -10.94835 -10.73389 -10.18869 -9.01689 -7.92833 -5.23334 0.63127 1.36973 1.47215 1.52552 1.53070 1.61989 2.19507 2.60171 2.78327 3.19284 3.37327 3.43554 3.58830 3.64398 3.82162 3.86610 3.97461 4.07411 4.17340 4.20904 4.26966 4.32566 4.52065 4.58830 4.60697 4.69179 4.70514 4.75530 4.86012 4.89170 5.07943 5.15116 5.17526 5.18897 5.51361 5.66719 6.01271 6.26951 7.33746 7.51970 8.04735 8.31348 9.31202 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041169 B = 0.002976 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.967094 B = 9406.544342 C = 9597.153067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.244 3.756 3 C -0.151 4.151 4 O -0.389 6.389 5 C 0.035 3.965 6 C 0.031 3.969 7 H 0.085 0.915 8 C 0.117 3.883 9 N -0.282 5.282 10 C -0.014 4.014 11 C -0.040 4.040 12 C 0.236 3.764 13 N -0.739 5.739 14 C -0.245 4.245 15 H 0.084 0.916 16 C -0.078 4.078 17 N -0.973 5.973 18 Si 0.980 3.020 19 H -0.282 1.282 20 H -0.298 1.298 21 H -0.268 1.268 22 N -0.299 5.299 23 N -0.110 5.110 24 O -0.384 6.384 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.226 0.774 36 H 0.027 0.973 37 H 0.062 0.938 38 H 0.371 0.629 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 14.712 23.301 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.168 3.832 3 C -0.208 4.208 4 O -0.311 6.311 5 C -0.042 4.042 6 C -0.027 4.027 7 H 0.103 0.897 8 C -0.002 4.002 9 N -0.076 5.076 10 C -0.166 4.166 11 C -0.179 4.179 12 C 0.109 3.891 13 N -0.381 5.381 14 C -0.376 4.376 15 H 0.102 0.898 16 C -0.269 4.269 17 N -0.624 5.624 18 Si 0.808 3.192 19 H -0.209 1.209 20 H -0.225 1.225 21 H -0.193 1.193 22 N -0.166 5.166 23 N -0.089 5.089 24 O -0.306 6.306 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.242 0.758 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.202 0.798 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.407 14.180 23.755 27.770 hybrid contribution 0.901 -0.269 -1.254 1.568 sum -1.505 13.911 22.500 26.496 Atomic orbital electron populations 1.22391 0.93670 1.03032 1.03889 1.23574 0.93350 0.92110 0.74186 1.22072 1.02607 0.92240 1.03925 1.88890 1.70053 1.42498 1.29619 1.24313 0.97646 0.90344 0.91885 1.24295 0.99086 0.84717 0.94582 0.89723 1.22582 0.96659 1.05009 0.75988 1.47432 1.16740 1.34212 1.09173 1.23809 1.03314 1.05598 0.83891 1.22270 0.94644 1.02641 0.98318 1.18942 0.95797 0.90902 0.83489 1.42510 1.70127 1.19439 1.06072 1.19707 1.30143 1.02228 0.85538 0.89830 1.25649 1.02191 0.96497 1.02609 1.69856 1.47463 1.08856 1.36184 0.85046 0.78240 0.76308 0.79574 1.20872 1.22489 1.19293 1.75003 1.24088 1.18745 0.98775 1.78068 1.04382 1.15991 1.10485 1.89336 1.86204 1.21857 1.33200 0.89270 0.90829 0.92776 0.91130 0.90603 0.89212 0.85431 0.87635 0.83403 0.83568 0.75750 0.95552 0.92055 0.79780 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.19 71.98 0.66 -2.21 16 2 C 0.24 4.20 1.47 30.60 0.04 4.24 16 3 C -0.15 -2.05 9.24 71.98 0.66 -1.39 16 4 O -0.39 -6.35 10.87 -126.22 -1.37 -7.72 16 5 C 0.03 0.36 7.54 72.64 0.55 0.90 16 6 C 0.03 0.50 3.56 31.25 0.11 0.61 16 7 H 0.08 1.65 8.04 -2.39 -0.02 1.64 16 8 C 0.12 1.66 6.22 86.38 0.54 2.20 16 9 N -0.28 -7.55 3.44 -347.74 -1.20 -8.75 16 10 C -0.01 -0.42 11.50 83.49 0.96 0.54 16 11 C -0.04 -1.58 6.61 41.59 0.28 -1.30 16 12 C 0.24 10.24 6.82 85.63 0.58 10.82 16 13 N -0.74 -39.71 5.59 -347.17 -1.94 -41.65 16 14 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 17 N -0.97 -61.35 13.06 21.65 0.28 -61.07 16 18 Si 0.98 46.75 29.55 68.60 2.03 48.77 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 N -0.30 -12.76 12.41 -48.60 -0.60 -13.36 16 23 N -0.11 -3.92 12.86 37.02 0.48 -3.45 16 24 O -0.38 -7.93 10.73 -126.22 -1.35 -9.28 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.11 0.60 8.03 -2.39 -0.02 0.58 16 33 H 0.15 1.18 8.07 -2.39 -0.02 1.16 16 34 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.23 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.37 21.71 7.66 -92.71 -0.71 21.00 16 39 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.30 334.90 2.35 -76.94 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.34 Total: 22.39 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.69 Total: -2.83 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -2.98 Total: -128.28 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -2.73 Total: -17.00 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -79.30 2.35 -76.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336894983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.284 kcal (2) G-P(sol) polarization free energy of solvation -79.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds