Wall clock time and date at job start Tue Mar 31 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.62703 * 2 1 4 4 O 1.43748 * 109.63341 * 120.39333 * 2 1 3 5 5 C 1.44789 * 104.81912 * 95.56817 * 4 2 1 6 6 C 1.54919 * 101.71914 * 36.10098 * 5 4 2 7 7 H 1.09002 * 110.69169 * 83.01142 * 6 5 4 8 8 C 1.53001 * 110.69524 * 206.04460 * 6 5 4 9 9 N 1.46497 * 109.47257 * 184.99910 * 8 6 5 10 10 C 1.35312 * 125.86658 * 124.99526 * 9 8 6 11 11 C 1.35352 * 106.17284 * 180.02562 * 10 9 8 12 12 C 1.50703 * 126.75158 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47474 * 95.00248 * 12 11 10 14 14 C 1.36931 * 120.00458 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00103 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00429 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14 21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14 22 22 N 1.33767 * 106.49833 * 0.26609 * 11 10 9 23 23 N 1.28637 * 108.88747 * 359.56348 * 22 11 10 24 24 O 1.43373 * 109.63034 * 239.75763 * 2 1 3 25 25 H 1.08995 * 109.47117 * 301.05632 * 1 2 3 26 26 H 1.08997 * 109.47491 * 61.05887 * 1 2 3 27 27 H 1.09008 * 109.47051 * 181.06056 * 1 2 3 28 28 H 1.09008 * 109.46936 * 178.93766 * 3 2 1 29 29 H 1.08994 * 109.47068 * 298.94124 * 3 2 1 30 30 H 1.08999 * 109.47140 * 58.94036 * 3 2 1 31 31 H 1.09001 * 110.97358 * 277.99948 * 5 4 2 32 32 H 1.08990 * 110.98544 * 154.21211 * 5 4 2 33 33 H 1.09003 * 109.47116 * 65.00349 * 8 6 5 34 34 H 1.08998 * 109.47171 * 305.00243 * 8 6 5 35 35 H 1.07995 * 126.91310 * 359.97438 * 10 9 8 36 36 H 1.08998 * 109.46706 * 335.00037 * 12 11 10 37 37 H 1.09000 * 109.47088 * 215.00822 * 12 11 10 38 38 H 0.97000 * 119.99459 * 359.97438 * 13 12 11 39 39 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0129 -0.6850 1.1678 5 6 2.2653 -2.0400 0.7245 6 6 2.7885 -1.8078 -0.7150 7 1 3.8516 -1.5672 -0.7043 8 6 2.5223 -3.0335 -1.5914 9 7 3.1313 -2.8335 -2.9086 10 6 4.0132 -3.6659 -3.5089 11 6 4.3137 -3.1005 -4.7014 12 6 5.2551 -3.6437 -5.7453 13 7 4.4951 -4.4055 -6.7393 14 6 5.1432 -4.9974 -7.7904 15 1 6.2148 -4.9030 -7.8864 16 6 4.4231 -5.7197 -8.7319 17 7 3.1172 -5.8353 -8.6147 18 14 5.3070 -6.5266 -10.1662 19 1 4.3200 -7.2319 -11.0225 20 1 6.0029 -5.4873 -10.9667 21 1 6.3011 -7.5015 -9.6496 22 7 3.6148 -1.9619 -4.7688 23 7 2.9200 -1.8355 -3.6936 24 8 2.0116 -0.6801 -1.1666 25 1 -0.3633 0.5301 0.8803 26 1 -0.3634 0.4973 -0.8993 27 1 -0.3633 -1.0276 0.0190 28 1 3.1338 1.4382 0.0191 29 1 1.6975 1.9503 -0.8993 30 1 1.6665 1.9614 0.8803 31 1 1.3458 -2.6253 0.7158 32 1 3.0245 -2.5181 1.3433 33 1 1.4471 -3.1719 -1.7055 34 1 2.9546 -3.9169 -1.1215 35 1 4.4001 -4.5942 -3.1154 36 1 5.9875 -4.2961 -5.2698 37 1 5.7693 -2.8174 -6.2362 38 1 3.5328 -4.4913 -6.6525 39 1 2.6139 -6.3397 -9.2729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336894985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:24 Heat of formation + Delta-G solvation = 0.221662 kcal Electronic energy + Delta-G solvation = -21964.820449 eV Core-core repulsion = 18523.622508 eV Total energy + Delta-G solvation = -3441.197941 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.18112 -41.67069 -37.08971 -36.39689 -35.62179 -33.94231 -33.51295 -31.56861 -30.89017 -28.44163 -27.69761 -27.18812 -24.77550 -23.78905 -22.72442 -22.16754 -21.72352 -19.34525 -18.72564 -18.17006 -17.63619 -17.10056 -16.63053 -16.20585 -15.89876 -15.67039 -15.35120 -15.08000 -15.04162 -14.52902 -14.25183 -13.94948 -13.83488 -13.49324 -13.32015 -13.15729 -13.09935 -13.02367 -12.73590 -12.71710 -12.48543 -12.37289 -12.11501 -11.86832 -11.75644 -11.26962 -11.03829 -10.93568 -10.66891 -10.15426 -9.01270 -7.92396 -5.22975 0.67418 1.41806 1.48837 1.54191 1.55200 1.61110 2.28882 2.60558 2.88195 3.21325 3.37051 3.42246 3.61398 3.71001 3.83364 3.91679 3.97202 4.08511 4.22664 4.24521 4.29887 4.38759 4.54547 4.60368 4.63254 4.69452 4.74470 4.78814 4.87322 4.93433 5.12345 5.17898 5.19060 5.22140 5.51242 5.71481 6.09339 6.27179 7.33803 7.59418 8.05458 8.31677 9.31476 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.045267 B = 0.002886 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.410065 B = 9700.964661 C = 9754.507193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.240 3.760 3 C -0.155 4.155 4 O -0.384 6.384 5 C 0.031 3.969 6 C 0.036 3.964 7 H 0.084 0.916 8 C 0.110 3.890 9 N -0.286 5.286 10 C -0.021 4.021 11 C -0.043 4.043 12 C 0.236 3.764 13 N -0.739 5.739 14 C -0.245 4.245 15 H 0.084 0.916 16 C -0.078 4.078 17 N -0.974 5.974 18 Si 0.980 3.020 19 H -0.297 1.297 20 H -0.280 1.280 21 H -0.270 1.270 22 N -0.308 5.308 23 N -0.096 5.096 24 O -0.382 6.382 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.174 0.826 35 H 0.235 0.765 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.370 0.630 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 6.355 26.665 27.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.164 3.836 3 C -0.212 4.212 4 O -0.304 6.304 5 C -0.046 4.046 6 C -0.022 4.022 7 H 0.102 0.898 8 C -0.009 4.009 9 N -0.081 5.081 10 C -0.172 4.172 11 C -0.182 4.182 12 C 0.109 3.891 13 N -0.382 5.382 14 C -0.377 4.377 15 H 0.102 0.898 16 C -0.270 4.270 17 N -0.624 5.624 18 Si 0.809 3.191 19 H -0.224 1.224 20 H -0.206 1.206 21 H -0.196 1.196 22 N -0.175 5.175 23 N -0.075 5.075 24 O -0.303 6.303 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.192 0.808 35 H 0.251 0.749 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.201 0.799 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.020 7.828 26.416 27.717 hybrid contribution 0.330 -1.257 -0.981 1.628 sum -2.691 6.570 25.435 26.408 Atomic orbital electron populations 1.22343 0.92633 1.03731 1.03748 1.23609 0.93863 0.91720 0.74445 1.22080 1.01835 0.93501 1.03780 1.89253 1.86131 1.22910 1.32153 1.24539 1.03540 0.84747 0.91757 1.24108 0.97260 0.86273 0.94588 0.89779 1.22743 1.01816 0.99991 0.76368 1.47556 1.29367 1.14845 1.16289 1.23929 0.97675 1.00633 0.94956 1.22338 1.03731 0.94298 0.97791 1.18951 0.90627 0.93177 0.86365 1.42516 1.06686 1.61593 1.27417 1.19677 0.92721 1.23906 1.01359 0.89772 1.25662 0.96331 1.02669 1.02355 1.69860 1.06828 1.47391 1.38363 0.85111 0.77059 0.78219 0.78748 1.22369 1.20585 1.19599 1.75063 1.08501 1.19105 1.14862 1.78341 1.20268 1.11128 0.97748 1.89156 1.69217 1.42108 1.29836 0.89382 0.91117 0.91397 0.92505 0.90676 0.89261 0.88042 0.83847 0.86704 0.80830 0.74913 0.91766 0.95730 0.79866 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.20 71.98 0.66 -1.85 16 2 C 0.24 4.39 1.47 30.59 0.04 4.44 16 3 C -0.15 -2.70 9.24 71.98 0.66 -2.03 16 4 O -0.38 -6.29 11.01 -126.22 -1.39 -7.68 16 5 C 0.03 0.28 7.36 72.64 0.53 0.82 16 6 C 0.04 0.56 3.81 31.25 0.12 0.68 16 7 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 8 C 0.11 1.54 6.21 86.38 0.54 2.08 16 9 N -0.29 -7.66 3.44 -347.74 -1.20 -8.85 16 10 C -0.02 -0.58 11.50 83.49 0.96 0.38 16 11 C -0.04 -1.68 6.61 41.60 0.28 -1.41 16 12 C 0.24 10.13 6.82 85.64 0.58 10.71 16 13 N -0.74 -39.74 5.59 -347.19 -1.94 -41.68 16 14 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 17 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 18 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 19 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 N -0.31 -13.43 12.41 -48.60 -0.60 -14.03 16 23 N -0.10 -3.58 12.46 37.02 0.46 -3.12 16 24 O -0.38 -8.81 10.03 -126.22 -1.27 -10.07 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 0.54 8.04 -2.39 -0.02 0.53 16 32 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.17 0.57 8.07 -2.39 -0.02 0.55 16 35 H 0.23 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.37 21.78 7.66 -92.71 -0.71 21.07 16 39 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -82.42 334.11 2.40 -80.02 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.34 Total: 21.51 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.69 Total: -3.49 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -3.00 Total: -129.06 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -2.66 Total: -17.75 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -82.42 2.40 -80.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336894985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.241 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds