Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46910 * 2 1 4 4 C 1.46502 * 119.99517 * 270.00025 * 3 2 1 5 5 C 1.50697 * 109.46555 * 269.99550 * 4 3 2 6 6 C 1.38238 * 120.00302 * 269.72495 * 5 4 3 7 7 C 1.38236 * 119.99909 * 179.76815 * 6 5 4 8 8 C 1.38231 * 120.00263 * 0.50926 * 7 6 5 9 9 C 1.38240 * 119.99686 * 359.74673 * 8 7 6 10 10 C 1.38231 * 120.00126 * 0.02562 * 9 8 7 11 11 C 1.38822 * 120.00247 * 89.99493 * 3 2 1 12 12 C 1.39798 * 119.58078 * 4.72550 * 11 3 2 13 13 C 1.38599 * 119.48670 * 180.27643 * 12 11 3 14 14 C 1.38383 * 118.68286 * 0.02562 * 13 12 11 15 15 C 1.40556 * 119.15028 * 359.97438 * 14 13 12 16 16 C 1.41318 * 119.78622 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99783 * 0.02562 * 16 15 14 18 18 C 1.40033 * 119.99856 * 180.02562 * 16 15 14 19 19 N 1.30741 * 119.99993 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47188 * 59.99678 * 20 18 16 22 22 H 1.48496 * 109.47181 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47338 * 300.00255 * 20 18 16 24 24 N 1.31954 * 119.58495 * 185.00298 * 11 3 2 25 25 H 1.08993 * 109.47462 * 300.00227 * 1 2 3 26 26 H 1.08997 * 109.47349 * 60.00780 * 1 2 3 27 27 H 1.09005 * 109.46568 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47462 * 239.99773 * 2 1 3 29 29 H 1.08997 * 109.46669 * 119.99538 * 2 1 3 30 30 H 1.08996 * 109.47447 * 29.99321 * 4 3 2 31 31 H 1.09003 * 109.46822 * 150.00218 * 4 3 2 32 32 H 1.07994 * 119.99767 * 0.02562 * 6 5 4 33 33 H 1.08005 * 119.99393 * 180.23495 * 7 6 5 34 34 H 1.08002 * 120.00045 * 179.72024 * 8 7 6 35 35 H 1.07995 * 119.99390 * 179.97438 * 9 8 7 36 36 H 1.08000 * 119.99863 * 179.97438 * 10 9 8 37 37 H 1.08002 * 120.25813 * 0.26393 * 12 11 3 38 38 H 1.08001 * 120.65847 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.42907 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00185 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7037 6 6 4.6832 2.7072 -1.3094 7 6 5.9895 2.4873 -1.7044 8 6 6.2968 1.4012 -2.5023 9 6 5.2985 0.5320 -2.9010 10 6 3.9929 0.7492 -2.5022 11 6 2.2496 2.0358 1.2022 12 6 2.1092 1.3385 2.4057 13 6 2.3350 1.9954 3.6051 14 6 2.6945 3.3314 3.5732 15 6 2.8195 3.9773 2.3312 16 6 3.1854 5.3415 2.2830 17 1 3.3684 5.8841 3.1987 18 6 3.3107 5.9896 1.0480 19 7 3.0886 5.3328 -0.0604 20 14 3.7936 7.7929 0.9844 21 1 5.1237 7.9718 1.6201 22 1 3.8566 8.2388 -0.4306 23 1 2.7839 8.6018 1.7133 24 7 2.5938 3.3096 1.1948 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0954 3.1411 -1.1385 32 1 4.4425 3.5580 -0.6893 33 1 6.7693 3.1666 -1.3931 34 1 7.3167 1.2319 -2.8146 35 1 5.5386 -0.3163 -3.5248 36 1 3.2130 0.0704 -2.8140 37 1 1.8268 0.2961 2.4010 38 1 2.2315 1.4752 4.5459 39 1 2.8775 3.8706 4.4909 40 1 3.1757 5.7816 -0.9159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339024530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = 68.330037 kcal Electronic energy + Delta-G solvation = -22182.119617 eV Core-core repulsion = 19154.724340 eV Total energy + Delta-G solvation = -3027.395277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.01026 -38.09556 -35.89401 -33.43839 -31.86399 -30.68828 -30.26866 -29.90003 -28.25186 -25.99795 -24.55794 -22.73441 -21.87062 -21.41767 -20.71027 -19.39175 -17.43993 -16.37268 -15.93658 -15.12328 -14.88786 -14.69406 -14.39795 -14.15742 -13.76016 -13.48456 -13.05586 -12.82007 -12.67744 -12.30626 -12.12157 -11.96285 -11.83161 -11.54420 -11.19417 -11.07210 -10.90671 -10.78420 -10.66293 -10.48827 -10.29087 -10.24077 -9.90917 -9.39725 -8.71400 -8.37238 -8.21787 -7.89554 -7.45427 -6.38642 -6.35757 -4.47557 1.85866 1.99284 2.87711 3.09925 3.12579 3.24197 3.30169 3.95845 3.97195 4.50831 4.81542 5.30806 5.38410 5.41308 5.49028 5.65788 5.67353 5.76963 5.90417 6.03193 6.07001 6.11575 6.16160 6.23203 6.29753 6.48392 6.54277 6.62563 6.70323 6.79366 6.86095 6.91151 6.93706 7.07675 7.16582 7.24773 7.39699 7.60333 7.70386 7.84249 7.97036 8.02359 8.39055 8.55340 8.80462 9.11626 10.22369 10.37921 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.008001 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.289164 B = 3498.847626 C = 5002.648828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 N -0.611 5.611 4 C 0.168 3.832 5 C -0.089 4.089 6 C -0.086 4.086 7 C -0.134 4.134 8 C -0.130 4.130 9 C -0.139 4.139 10 C -0.120 4.120 11 C 0.415 3.585 12 C -0.364 4.364 13 C -0.032 4.032 14 C -0.317 4.317 15 C 0.293 3.707 16 C -0.433 4.433 17 H 0.080 0.920 18 C 0.077 3.923 19 N -0.721 5.721 20 Si 0.902 3.098 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.267 1.267 24 N -0.524 5.524 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.116 0.884 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 -6.262 -5.615 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.006 3.994 3 N -0.327 5.327 4 C 0.044 3.956 5 C -0.091 4.091 6 C -0.104 4.104 7 C -0.152 4.152 8 C -0.149 4.149 9 C -0.157 4.157 10 C -0.138 4.138 11 C 0.177 3.823 12 C -0.390 4.390 13 C -0.056 4.056 14 C -0.340 4.340 15 C 0.166 3.834 16 C -0.465 4.465 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.344 5.344 20 Si 0.727 3.273 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.191 1.191 24 N -0.245 5.245 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.181 0.819 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.551 -5.852 -6.713 8.922 hybrid contribution 0.238 0.143 0.782 0.830 sum 0.790 -5.709 -5.931 8.270 Atomic orbital electron populations 1.22221 0.97386 1.00725 1.02368 1.21163 0.93163 0.83542 1.01545 1.46074 1.71933 1.11986 1.02691 1.20220 0.89771 1.01123 0.84454 1.20552 0.97770 0.94474 0.96266 1.21998 0.91488 1.00231 0.96655 1.21232 0.97167 0.97885 0.98950 1.21019 0.98489 0.95904 0.99459 1.20921 0.93393 0.99659 1.01709 1.21020 0.96077 0.97600 0.99135 1.18477 0.89850 0.90115 0.83906 1.20658 1.26194 0.99606 0.92494 1.20586 0.95147 0.94247 0.95651 1.21529 1.18706 0.95647 0.98110 1.18195 0.86860 0.92651 0.85692 1.19511 1.39878 0.93809 0.93285 0.90146 1.25963 0.93666 0.99552 0.95525 1.69992 1.30361 1.36012 0.98023 0.86479 0.80003 0.82818 0.78007 1.19125 1.20329 1.19147 1.68188 1.23293 1.03891 1.29170 0.92227 0.93012 0.92829 0.92166 0.91081 0.92830 0.86558 0.81876 0.86947 0.87242 0.87206 0.87250 0.89025 0.89075 0.88877 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.13 2.10 5.96 -4.04 -0.02 2.08 16 3 N -0.61 -12.19 2.57 -175.17 -0.45 -12.64 16 4 C 0.17 3.22 5.59 -5.19 -0.03 3.19 16 5 C -0.09 -1.67 5.46 -104.62 -0.57 -2.24 16 6 C -0.09 -1.74 9.70 -39.58 -0.38 -2.12 16 7 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 8 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 9 C -0.14 -2.10 10.05 -39.58 -0.40 -2.50 16 10 C -0.12 -1.94 9.70 -39.58 -0.38 -2.32 16 11 C 0.41 9.83 7.38 -155.32 -1.15 8.69 16 12 C -0.36 -8.32 9.29 -38.87 -0.36 -8.68 16 13 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 14 C -0.32 -7.90 9.83 -38.65 -0.38 -8.28 16 15 C 0.29 7.84 6.55 -85.00 -0.56 7.28 16 16 C -0.43 -11.22 9.14 -37.74 -0.34 -11.57 16 17 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 18 C 0.08 1.86 5.50 -17.34 -0.10 1.76 16 19 N -0.72 -17.47 9.20 55.55 0.51 -16.96 16 20 Si 0.90 18.13 29.56 -169.99 -5.02 13.10 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 N -0.52 -13.56 6.14 -10.33 -0.06 -13.62 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.07 1.17 5.96 -51.93 -0.31 0.86 16 30 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 31 H 0.12 2.57 6.75 -51.93 -0.35 2.22 16 32 H 0.16 3.77 5.77 -52.49 -0.30 3.47 16 33 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.09 1.89 6.01 -52.49 -0.32 1.57 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.27 6.05 8.29 -40.82 -0.34 5.71 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -27.27 332.89 -10.96 -38.23 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.47 Total: 10.00 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -5.49 Total: -23.13 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.00 Total: -43.22 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.27 -10.96 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339024530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.560 kcal (2) G-P(sol) polarization free energy of solvation -27.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds