Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.48926 * 2 1 4 4 C 1.53094 * 109.47883 * 120.03073 * 2 1 3 5 5 C 1.53177 * 109.16516 * 62.37435 * 4 2 1 6 6 H 1.09000 * 109.54179 * 297.11502 * 5 4 2 7 7 C 1.50695 * 109.61807 * 176.89230 * 5 4 2 8 8 O 1.20832 * 119.99733 * 352.28809 * 7 5 4 9 9 O 1.34226 * 120.00288 * 172.29167 * 7 5 4 10 10 C 1.45193 * 117.00340 * 185.06914 * 9 7 5 11 11 C 1.53002 * 109.47459 * 184.71782 * 10 9 7 12 12 C 1.50704 * 115.54748 * 275.72892 * 11 10 9 13 13 H 1.07991 * 120.00157 * 114.36978 * 12 11 10 14 14 C 1.37878 * 119.99635 * 294.36267 * 12 11 10 15 15 N 1.31521 * 120.00474 * 353.35809 * 14 12 11 16 16 Si 1.86807 * 119.99704 * 173.35512 * 14 12 11 17 17 H 1.48497 * 109.47167 * 60.00196 * 16 14 12 18 18 H 1.48501 * 109.46813 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46928 * 300.00357 * 16 14 12 20 20 C 1.53001 * 117.49940 * 130.01997 * 11 10 9 21 21 C 1.52995 * 117.49900 * 61.39313 * 11 10 9 22 22 C 1.53178 * 109.03609 * 56.97687 * 5 4 2 23 23 C 1.53090 * 109.21517 * 302.98890 * 22 5 4 24 24 O 1.42899 * 109.47992 * 239.97191 * 2 1 3 25 25 H 1.09000 * 109.46885 * 299.97091 * 1 2 3 26 26 H 1.08997 * 109.46671 * 59.96980 * 1 2 3 27 27 H 1.08993 * 109.47257 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47710 * 300.02684 * 3 2 1 30 30 H 1.08999 * 109.47713 * 60.03426 * 3 2 1 31 31 H 1.09000 * 109.51897 * 302.46382 * 4 2 1 32 32 H 1.09001 * 109.57101 * 182.31048 * 4 2 1 33 33 H 1.09001 * 109.47382 * 304.71725 * 10 9 7 34 34 H 1.09007 * 109.47183 * 64.71923 * 10 9 7 35 35 H 0.96998 * 119.99984 * 185.00372 * 15 14 12 36 36 H 1.08990 * 117.49846 * 359.97438 * 20 11 10 37 37 H 1.08998 * 117.49853 * 145.02276 * 20 11 10 38 38 H 1.08996 * 117.50173 * 214.97960 * 21 11 10 39 39 H 1.08997 * 117.49917 * 0.02562 * 21 11 10 40 40 H 1.09000 * 109.52197 * 62.92830 * 22 5 4 41 41 H 1.08998 * 109.52026 * 183.05474 * 22 5 4 42 42 H 1.09006 * 109.47570 * 177.62303 * 23 22 5 43 43 H 1.09001 * 109.48252 * 297.65687 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 1.2496 5 6 1.5757 -2.1814 1.2121 6 1 0.4867 -2.2180 1.2407 7 6 2.1364 -2.9216 2.3990 8 8 2.9463 -2.3855 3.1178 9 8 1.7361 -4.1764 2.6577 10 6 2.2302 -4.7875 3.8786 11 6 1.7671 -6.2443 3.9434 12 6 0.3836 -6.4624 4.4997 13 1 -0.3983 -6.8523 3.8651 14 6 0.1163 -6.1642 5.8190 15 7 1.0945 -5.8144 6.6255 16 14 -1.6355 -6.2569 6.4611 17 1 -2.1514 -7.6394 6.2941 18 1 -1.6553 -5.8911 7.9002 19 1 -2.4925 -5.3134 5.6991 20 6 2.8247 -7.3092 4.2409 21 6 2.2385 -7.1855 2.8330 22 6 2.0764 -2.8322 -0.0810 23 6 1.5645 -2.0298 -1.2799 24 8 2.0066 -0.6742 -1.1664 25 1 -0.3633 0.5134 0.8903 26 1 -0.3632 0.5143 -0.8897 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1305 1.4419 -0.0005 29 1 1.6770 1.9565 -0.8897 30 1 1.6779 1.9562 0.8902 31 1 1.6421 -0.2357 2.1398 32 1 3.1298 -0.6875 1.2720 33 1 3.3196 -4.7519 3.8876 34 1 1.8417 -4.2442 4.7400 35 1 0.9188 -5.6752 7.5692 36 1 3.8503 -6.9720 4.3900 37 1 2.5200 -8.1678 4.8392 38 1 1.5481 -7.9627 2.5052 39 1 2.8788 -6.7669 2.0566 40 1 3.1664 -2.8400 -0.0865 41 1 1.7045 -3.8550 -0.1416 42 1 1.9530 -2.4646 -2.2009 43 1 0.4749 -2.0563 -1.2966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342689592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -125.073124 kcal Electronic energy + Delta-G solvation = -23147.152339 eV Core-core repulsion = 19771.768800 eV Total energy + Delta-G solvation = -3375.383538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59723 -39.24223 -36.83625 -35.23032 -33.81601 -33.64748 -32.08056 -28.52177 -27.49985 -27.07452 -25.51246 -24.50895 -22.71618 -21.25538 -20.18744 -19.27455 -19.21085 -17.17129 -16.64427 -16.21038 -16.16497 -15.54031 -15.12418 -14.79427 -14.59123 -14.36931 -14.01040 -13.50128 -13.19196 -13.14638 -12.64070 -12.29858 -12.12289 -12.06120 -11.93617 -11.83642 -11.67989 -11.35619 -11.18670 -10.97898 -10.94845 -10.83117 -10.57540 -10.32388 -10.29591 -10.02567 -9.87248 -9.65187 -9.37582 -8.88903 -8.60472 -8.24906 -6.11436 -4.17110 2.71413 3.25173 3.28167 3.32004 3.34193 3.62684 4.34120 4.49516 4.65086 4.68201 4.81205 4.85782 5.06555 5.10249 5.22661 5.28923 5.30690 5.41666 5.50891 5.57039 5.59180 5.63343 5.68631 5.80420 5.90805 5.95121 5.97219 6.04756 6.08687 6.24257 6.25220 6.32422 6.57171 6.65729 6.70016 6.97626 7.14408 7.28058 7.32901 7.41393 7.82036 8.32637 8.41146 8.82625 9.47325 10.96928 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.004319 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.964274 B = 6480.695058 C = 6942.680059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.113 3.887 3 C -0.136 4.136 4 C -0.126 4.126 5 C -0.084 4.084 6 H 0.107 0.893 7 C 0.458 3.542 8 O -0.520 6.520 9 O -0.344 6.344 10 C 0.115 3.885 11 C 0.043 3.957 12 C -0.493 4.493 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.894 3.106 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.163 4.163 21 C -0.197 4.197 22 C -0.146 4.146 23 C 0.062 3.938 24 O -0.375 6.375 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.264 0.736 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.030 10.016 -13.556 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.073 3.927 3 C -0.193 4.193 4 C -0.164 4.164 5 C -0.103 4.103 6 H 0.125 0.875 7 C 0.301 3.699 8 O -0.409 6.409 9 O -0.260 6.260 10 C 0.042 3.958 11 C 0.043 3.957 12 C -0.530 4.530 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.519 5.519 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.201 4.201 21 C -0.235 4.235 22 C -0.184 4.184 23 C -0.015 4.015 24 O -0.294 6.294 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.369 10.334 -13.253 16.810 hybrid contribution -0.931 -0.326 0.960 1.376 sum -0.562 10.008 -12.293 15.862 Atomic orbital electron populations 1.22498 0.95625 1.02982 1.02921 1.21490 0.93171 0.92898 0.85095 1.21738 1.02099 0.93065 1.02447 1.22100 1.03007 0.92940 0.98353 1.21084 1.02445 0.94700 0.92085 0.87529 1.23410 0.79461 0.81400 0.85652 1.90611 1.32338 1.68306 1.49680 1.86494 1.67706 1.26976 1.44779 1.22931 0.95753 0.94771 0.82365 1.18788 0.94992 0.85136 0.96817 1.20432 0.93332 1.43792 0.95450 0.91881 1.25027 0.97180 0.94394 0.96883 1.69946 1.31417 1.46107 1.04387 0.86627 0.84808 0.78675 0.77778 1.20094 1.21182 1.20058 1.22759 0.96876 1.03229 0.97254 1.22811 1.04286 1.04822 0.91543 1.22169 1.02469 1.00712 0.93061 1.22610 0.99037 0.81910 0.97937 1.87974 1.73798 1.24603 1.43054 0.91231 0.91714 0.91627 0.91694 0.91792 0.90991 0.90173 0.89888 0.94083 0.89814 0.92646 0.91643 0.89613 0.90169 0.91346 0.90562 0.89154 0.88419 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 7.94 37.16 0.29 -1.42 16 2 C 0.11 1.22 1.11 -90.57 -0.10 1.12 16 3 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 4 C -0.13 -1.63 3.60 -26.59 -0.10 -1.73 16 5 C -0.08 -1.19 2.40 -91.59 -0.22 -1.41 16 6 H 0.11 1.39 6.62 -51.93 -0.34 1.05 16 7 C 0.46 8.82 7.20 36.00 0.26 9.07 16 8 O -0.52 -11.32 15.59 -18.75 -0.29 -11.62 16 9 O -0.34 -7.48 10.16 -39.25 -0.40 -7.88 16 10 C 0.11 2.79 5.38 37.16 0.20 2.99 16 11 C 0.04 1.08 1.55 -155.66 -0.24 0.83 16 12 C -0.49 -13.34 8.82 -34.44 -0.30 -13.65 16 13 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 14 C 0.07 1.86 5.24 -17.82 -0.09 1.76 16 15 N -0.88 -24.82 12.57 55.43 0.70 -24.12 16 16 Si 0.89 20.86 29.55 -169.99 -5.02 15.84 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.16 -3.77 9.88 -26.73 -0.26 -4.03 16 21 C -0.20 -4.27 9.89 -26.73 -0.26 -4.54 16 22 C -0.15 -1.78 5.40 -26.59 -0.14 -1.93 16 23 C 0.06 0.63 6.53 37.20 0.24 0.87 16 24 O -0.37 -4.43 10.24 -35.23 -0.36 -4.79 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.18 7.93 -51.93 -0.41 0.76 16 33 H 0.04 0.98 7.74 -51.93 -0.40 0.58 16 34 H 0.08 2.27 7.25 -51.93 -0.38 1.89 16 35 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 36 H 0.07 1.42 8.06 -51.93 -0.42 1.01 16 37 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.53 6.35 -51.93 -0.33 0.20 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -30.05 345.96 -7.72 -37.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.16 Total: 2.56 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.40 Total: -12.98 kcal Atomic # 7 Polarization: -24.82 SS G_CDS: 0.70 Total: -24.12 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -1.05 Total: -24.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.05 -7.72 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342689592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.300 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds