Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.48926 * 2 1 4 4 C 1.53094 * 109.47883 * 120.03073 * 2 1 3 5 5 C 1.53177 * 109.16516 * 62.37435 * 4 2 1 6 6 H 1.09000 * 109.54179 * 297.11502 * 5 4 2 7 7 C 1.50695 * 109.61807 * 176.89230 * 5 4 2 8 8 O 1.20832 * 119.99733 * 352.28809 * 7 5 4 9 9 O 1.34226 * 120.00288 * 172.29167 * 7 5 4 10 10 C 1.45193 * 117.00340 * 185.06914 * 9 7 5 11 11 C 1.53002 * 109.47459 * 184.71782 * 10 9 7 12 12 C 1.50704 * 115.54748 * 275.72892 * 11 10 9 13 13 H 1.07991 * 120.00157 * 114.36978 * 12 11 10 14 14 C 1.37878 * 119.99635 * 294.36267 * 12 11 10 15 15 N 1.31521 * 120.00474 * 353.35809 * 14 12 11 16 16 Si 1.86807 * 119.99704 * 173.35512 * 14 12 11 17 17 H 1.48497 * 109.47167 * 60.00196 * 16 14 12 18 18 H 1.48501 * 109.46813 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46928 * 300.00357 * 16 14 12 20 20 C 1.53001 * 117.49940 * 130.01997 * 11 10 9 21 21 C 1.52995 * 117.49900 * 61.39313 * 11 10 9 22 22 C 1.53178 * 109.03609 * 56.97687 * 5 4 2 23 23 C 1.53090 * 109.21517 * 302.98890 * 22 5 4 24 24 O 1.42899 * 109.47992 * 239.97191 * 2 1 3 25 25 H 1.09000 * 109.46885 * 299.97091 * 1 2 3 26 26 H 1.08997 * 109.46671 * 59.96980 * 1 2 3 27 27 H 1.08993 * 109.47257 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47710 * 300.02684 * 3 2 1 30 30 H 1.08999 * 109.47713 * 60.03426 * 3 2 1 31 31 H 1.09000 * 109.51897 * 302.46382 * 4 2 1 32 32 H 1.09001 * 109.57101 * 182.31048 * 4 2 1 33 33 H 1.09001 * 109.47382 * 304.71725 * 10 9 7 34 34 H 1.09007 * 109.47183 * 64.71923 * 10 9 7 35 35 H 0.96998 * 119.99984 * 185.00372 * 15 14 12 36 36 H 1.08990 * 117.49846 * 359.97438 * 20 11 10 37 37 H 1.08998 * 117.49853 * 145.02276 * 20 11 10 38 38 H 1.08996 * 117.50173 * 214.97960 * 21 11 10 39 39 H 1.08997 * 117.49917 * 0.02562 * 21 11 10 40 40 H 1.09000 * 109.52197 * 62.92830 * 22 5 4 41 41 H 1.08998 * 109.52026 * 183.05474 * 22 5 4 42 42 H 1.09006 * 109.47570 * 177.62303 * 23 22 5 43 43 H 1.09001 * 109.48252 * 297.65687 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0406 -0.7223 1.2496 5 6 1.5757 -2.1814 1.2121 6 1 0.4867 -2.2180 1.2407 7 6 2.1364 -2.9216 2.3990 8 8 2.9463 -2.3855 3.1178 9 8 1.7361 -4.1764 2.6577 10 6 2.2302 -4.7875 3.8786 11 6 1.7671 -6.2443 3.9434 12 6 0.3836 -6.4624 4.4997 13 1 -0.3983 -6.8523 3.8651 14 6 0.1163 -6.1642 5.8190 15 7 1.0945 -5.8144 6.6255 16 14 -1.6355 -6.2569 6.4611 17 1 -2.1514 -7.6394 6.2941 18 1 -1.6553 -5.8911 7.9002 19 1 -2.4925 -5.3134 5.6991 20 6 2.8247 -7.3092 4.2409 21 6 2.2385 -7.1855 2.8330 22 6 2.0764 -2.8322 -0.0810 23 6 1.5645 -2.0298 -1.2799 24 8 2.0066 -0.6742 -1.1664 25 1 -0.3633 0.5134 0.8903 26 1 -0.3632 0.5143 -0.8897 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1305 1.4419 -0.0005 29 1 1.6770 1.9565 -0.8897 30 1 1.6779 1.9562 0.8902 31 1 1.6421 -0.2357 2.1398 32 1 3.1298 -0.6875 1.2720 33 1 3.3196 -4.7519 3.8876 34 1 1.8417 -4.2442 4.7400 35 1 0.9188 -5.6752 7.5692 36 1 3.8503 -6.9720 4.3900 37 1 2.5200 -8.1678 4.8392 38 1 1.5481 -7.9627 2.5052 39 1 2.8788 -6.7669 2.0566 40 1 3.1664 -2.8400 -0.0865 41 1 1.7045 -3.8550 -0.1416 42 1 1.9530 -2.4646 -2.2009 43 1 0.4749 -2.0563 -1.2966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342689592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -140.905884 kcal Electronic energy + Delta-G solvation = -23147.838899 eV Core-core repulsion = 19771.768800 eV Total energy + Delta-G solvation = -3376.070098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89327 -40.52172 -38.62926 -36.97745 -34.88976 -34.51124 -34.12907 -29.50744 -28.79547 -28.23576 -27.45261 -25.80532 -23.73356 -23.03166 -21.57913 -21.19462 -20.19737 -18.65108 -18.48872 -17.53273 -17.23963 -17.06081 -16.65611 -16.34701 -15.84547 -15.56815 -15.31083 -14.85455 -14.73523 -14.07258 -13.98389 -13.67193 -13.59509 -13.33481 -12.97810 -12.94291 -12.87986 -12.82855 -12.65368 -12.45214 -12.35827 -12.14180 -12.10461 -11.87373 -11.72408 -11.62467 -11.41439 -11.05166 -10.85706 -10.57057 -10.46007 -10.14308 -8.16979 -6.28796 1.15325 1.40974 1.42949 1.50359 1.73702 2.39374 2.81376 3.07774 3.35590 3.49265 3.64249 3.69472 3.81466 4.02677 4.09690 4.11490 4.25827 4.31613 4.36631 4.42411 4.47046 4.63810 4.65137 4.67722 4.80181 4.82288 4.86012 4.90221 4.92156 4.97258 5.05195 5.07295 5.08781 5.13638 5.31631 5.38642 5.42338 5.52537 5.65220 5.73531 6.30790 6.31715 6.75094 6.76721 7.38866 8.90986 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.004319 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.964274 B = 6480.695058 C = 6942.680059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.114 3.886 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.078 4.078 6 H 0.123 0.877 7 C 0.453 3.547 8 O -0.550 6.550 9 O -0.348 6.348 10 C 0.129 3.871 11 C 0.009 3.991 12 C -0.508 4.508 13 H 0.060 0.940 14 C 0.022 3.978 15 N -0.912 5.912 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.165 4.165 21 C -0.168 4.168 22 C -0.143 4.143 23 C 0.063 3.937 24 O -0.387 6.387 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 10.380 -15.446 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.075 3.925 3 C -0.194 4.194 4 C -0.162 4.162 5 C -0.097 4.097 6 H 0.141 0.859 7 C 0.298 3.702 8 O -0.441 6.441 9 O -0.264 6.264 10 C 0.055 3.945 11 C 0.008 3.992 12 C -0.546 4.546 13 H 0.078 0.922 14 C -0.178 4.178 15 N -0.549 5.549 16 Si 0.779 3.221 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.203 4.203 21 C -0.205 4.205 22 C -0.181 4.181 23 C -0.013 4.013 24 O -0.306 6.306 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.929 10.696 -15.167 18.583 hybrid contribution -0.476 -0.416 1.527 1.653 sum -1.406 10.280 -13.640 17.138 Atomic orbital electron populations 1.22494 0.94188 1.03280 1.03929 1.21558 0.94225 0.93182 0.83566 1.21769 1.01708 0.92271 1.03605 1.22118 1.01898 0.92364 0.99774 1.21266 1.03091 0.94745 0.90555 0.85885 1.24530 0.78738 0.80470 0.86484 1.90593 1.33811 1.68608 1.51093 1.86506 1.67914 1.28429 1.43539 1.22484 0.95160 0.94518 0.82304 1.18872 0.94858 0.85766 0.99675 1.20719 0.94392 1.43701 0.95747 0.92188 1.25759 1.00771 0.94101 0.97157 1.70064 1.33301 1.47113 1.04460 0.85670 0.80337 0.79021 0.77057 1.19131 1.21082 1.19589 1.22720 0.96887 1.02172 0.98514 1.22836 1.03469 1.03259 0.90974 1.22199 1.01864 1.01253 0.92759 1.22744 1.00055 0.80952 0.97541 1.87974 1.74271 1.25264 1.43125 0.90591 0.90412 0.91661 0.92423 0.90576 0.89905 0.90537 0.91727 0.94410 0.93424 0.92823 0.90768 0.90682 0.89233 0.89305 0.91626 0.88719 0.86337 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 7.94 71.98 0.57 -2.34 16 2 C 0.11 2.24 1.11 -10.76 -0.01 2.23 16 3 C -0.14 -2.26 8.85 71.98 0.64 -1.62 16 4 C -0.12 -3.11 3.60 30.68 0.11 -3.00 16 5 C -0.08 -2.13 2.40 -11.42 -0.03 -2.16 16 6 H 0.12 3.00 6.62 -2.39 -0.02 2.98 16 7 C 0.45 17.57 7.20 71.23 0.51 18.09 16 8 O -0.55 -24.63 15.59 21.95 0.34 -24.29 16 9 O -0.35 -15.22 10.16 -51.38 -0.52 -15.74 16 10 C 0.13 6.42 5.38 71.98 0.39 6.80 16 11 C 0.01 0.44 1.55 -52.93 -0.08 0.35 16 12 C -0.51 -27.61 8.82 25.60 0.23 -27.38 16 13 H 0.06 3.20 7.82 -2.91 -0.02 3.18 16 14 C 0.02 1.23 5.24 84.65 0.44 1.67 16 15 N -0.91 -52.30 12.57 21.45 0.27 -52.03 16 16 Si 0.95 42.80 29.55 68.60 2.03 44.83 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 C -0.17 -7.59 9.88 30.60 0.30 -7.29 16 21 C -0.17 -7.04 9.89 30.60 0.30 -6.74 16 22 C -0.14 -3.25 5.40 30.68 0.17 -3.09 16 23 C 0.06 1.12 6.53 72.01 0.47 1.59 16 24 O -0.39 -8.24 10.24 -148.98 -1.53 -9.76 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.04 4.98 -2.39 -0.01 1.03 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.85 7.93 -2.39 -0.02 1.83 16 33 H 0.04 1.85 7.74 -2.39 -0.02 1.83 16 34 H 0.05 2.68 7.25 -2.38 -0.02 2.67 16 35 H 0.26 14.43 8.32 -92.71 -0.77 13.66 16 36 H 0.07 3.22 8.06 -2.39 -0.02 3.20 16 37 H 0.07 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.09 3.56 8.14 -2.39 -0.02 3.55 16 39 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.07 1.09 6.35 -2.39 -0.02 1.08 16 Total: -1.00 -64.87 345.96 5.58 -59.30 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.98 Total: 20.60 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.01 Total: -22.89 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.27 Total: -52.03 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.70 Total: -49.79 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -64.87 5.58 -59.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342689592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.610 kcal (2) G-P(sol) polarization free energy of solvation -64.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds