Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.48838 * 2 1 4 4 C 1.53088 * 109.48436 * 120.02958 * 2 1 3 5 5 C 1.53175 * 109.16745 * 177.59111 * 4 2 1 6 6 H 1.09005 * 109.54214 * 62.97814 * 5 4 2 7 7 C 1.50695 * 109.54591 * 183.15284 * 5 4 2 8 8 O 1.20827 * 119.99865 * 9.28647 * 7 5 4 9 9 O 1.34233 * 120.00258 * 189.28810 * 7 5 4 10 10 C 1.45203 * 117.00078 * 184.06639 * 9 7 5 11 11 C 1.52999 * 109.46606 * 175.17277 * 10 9 7 12 12 C 1.50698 * 115.55555 * 54.60941 * 11 10 9 13 13 H 1.07995 * 119.99792 * 219.25198 * 12 11 10 14 14 C 1.37878 * 119.99964 * 39.52026 * 12 11 10 15 15 N 1.31518 * 119.99793 * 10.36358 * 14 12 11 16 16 Si 1.86800 * 119.99833 * 190.36127 * 14 12 11 17 17 H 1.48500 * 109.47151 * 60.00202 * 16 14 12 18 18 H 1.48504 * 109.46791 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47292 * 300.00112 * 16 14 12 20 20 C 1.53003 * 117.51124 * 200.30553 * 11 10 9 21 21 C 1.53007 * 117.49418 * 268.93300 * 11 10 9 22 22 C 1.53174 * 109.03609 * 303.02376 * 5 4 2 23 23 C 1.53087 * 109.16576 * 56.97898 * 22 5 4 24 24 O 1.42906 * 109.48040 * 239.97434 * 2 1 3 25 25 H 1.09004 * 109.47570 * 299.96965 * 1 2 3 26 26 H 1.08996 * 109.47766 * 59.97277 * 1 2 3 27 27 H 1.09007 * 109.47313 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47330 * 180.02562 * 3 2 1 29 29 H 1.08991 * 109.47602 * 300.03189 * 3 2 1 30 30 H 1.09005 * 109.46605 * 60.03042 * 3 2 1 31 31 H 1.09007 * 109.52104 * 57.68498 * 4 2 1 32 32 H 1.09006 * 109.57579 * 297.53498 * 4 2 1 33 33 H 1.08995 * 109.46818 * 55.16608 * 10 9 7 34 34 H 1.09004 * 109.46567 * 295.16933 * 10 9 7 35 35 H 0.96995 * 119.99545 * 184.98846 * 15 14 12 36 36 H 1.08993 * 117.49866 * 214.96469 * 20 11 10 37 37 H 1.08998 * 117.50317 * 359.97438 * 20 11 10 38 38 H 1.08994 * 117.49988 * 359.97438 * 21 11 10 39 39 H 1.08993 * 117.49289 * 145.00462 * 21 11 10 40 40 H 1.08999 * 109.52139 * 176.88241 * 22 5 4 41 41 H 1.08995 * 109.52512 * 297.06804 * 22 5 4 42 42 H 1.08999 * 109.48488 * 182.41210 * 23 22 5 43 43 H 1.08993 * 109.49270 * 62.37590 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2121 6 1 3.9690 0.2435 1.2424 7 6 4.0800 -1.5476 2.3990 8 8 3.3061 -2.1556 3.0999 9 8 5.3930 -1.5639 2.6775 10 6 5.8225 -2.4051 3.7804 11 6 7.3498 -2.3887 3.8694 12 6 7.9803 -1.0239 3.9727 13 1 8.8968 -0.8110 3.4425 14 6 7.3901 -0.0487 4.7484 15 7 6.3995 -0.3605 5.5553 16 14 7.9976 1.7152 4.6532 17 1 7.8417 2.2181 3.2647 18 1 7.2040 2.5626 5.5792 19 1 9.4302 1.7669 5.0405 20 6 8.0265 -3.5381 4.6191 21 6 8.1142 -3.4633 3.0934 22 6 4.0176 -1.4600 -0.0810 23 6 3.4307 -0.7092 -1.2791 24 8 2.0065 -0.6741 -1.1665 25 1 -0.3634 0.5134 0.8903 26 1 -0.3634 0.5142 -0.8897 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1304 1.4421 -0.0005 29 1 1.6768 1.9565 -0.8896 30 1 1.6776 1.9561 0.8903 31 1 1.6443 -1.7375 1.2709 32 1 1.7148 -0.1853 2.1405 33 1 5.4791 -3.4261 3.6137 34 1 5.4001 -2.0271 4.7114 35 1 5.9366 0.3361 6.0466 36 1 8.9277 -3.3071 5.1869 37 1 7.3836 -4.3059 5.0495 38 1 7.5290 -4.1820 2.5199 39 1 9.0731 -3.1829 2.6576 40 1 5.1058 -1.4496 -0.1422 41 1 3.6614 -2.4900 -0.0866 42 1 3.7099 -1.2201 -2.2006 43 1 3.8191 0.3091 -1.2960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342689594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -121.414032 kcal Electronic energy + Delta-G solvation = -23481.880779 eV Core-core repulsion = 20106.655911 eV Total energy + Delta-G solvation = -3375.224868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47922 -39.08854 -36.78714 -35.09421 -33.72685 -33.55702 -32.17390 -28.43353 -27.43322 -26.87412 -25.49175 -24.46692 -22.62183 -21.27172 -20.06602 -19.23118 -19.11117 -17.02824 -16.67337 -16.12461 -16.01770 -15.50948 -14.97653 -14.72885 -14.56435 -14.27039 -13.91407 -13.45114 -13.11411 -13.04190 -12.59279 -12.23916 -12.03687 -11.96734 -11.91369 -11.75525 -11.62401 -11.27475 -11.09076 -10.96246 -10.87178 -10.73544 -10.53453 -10.36862 -10.20354 -9.93652 -9.62044 -9.52900 -9.27308 -9.14668 -8.75443 -8.12834 -6.09696 -4.12506 2.90474 3.26616 3.32251 3.34973 3.44599 3.70504 4.35684 4.59172 4.73488 4.77696 4.86922 4.93739 5.02919 5.15284 5.32082 5.38914 5.43727 5.48522 5.57259 5.64048 5.66124 5.72415 5.76760 5.88515 5.97250 6.00929 6.03109 6.13857 6.14453 6.19310 6.33313 6.42898 6.59016 6.61666 6.79471 6.95409 7.21661 7.23535 7.37499 7.52706 7.84788 8.30493 8.61264 8.83440 9.48390 10.94660 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.005195 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.988634 B = 5388.115708 C = 5997.372763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.112 3.888 3 C -0.183 4.183 4 C -0.125 4.125 5 C -0.084 4.084 6 H 0.105 0.895 7 C 0.458 3.542 8 O -0.525 6.525 9 O -0.325 6.325 10 C 0.113 3.887 11 C 0.048 3.952 12 C -0.480 4.480 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.882 5.882 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.190 4.190 21 C -0.208 4.208 22 C -0.146 4.146 23 C 0.062 3.938 24 O -0.375 6.375 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.110 0.890 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 1.542 -11.389 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.073 3.927 3 C -0.240 4.240 4 C -0.163 4.163 5 C -0.103 4.103 6 H 0.123 0.877 7 C 0.301 3.699 8 O -0.416 6.416 9 O -0.239 6.239 10 C 0.040 3.960 11 C 0.047 3.953 12 C -0.517 4.517 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.519 5.519 16 Si 0.719 3.281 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.228 4.228 21 C -0.245 4.245 22 C -0.184 4.184 23 C -0.015 4.015 24 O -0.294 6.294 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.833 1.359 -11.082 14.237 hybrid contribution 0.569 0.878 0.434 1.132 sum -8.264 2.237 -10.649 13.664 Atomic orbital electron populations 1.21734 0.92225 1.02945 1.02397 1.21490 0.94883 0.91140 0.85159 1.22497 1.02334 0.96357 1.02846 1.22085 0.93094 1.02884 0.98235 1.21045 0.96530 1.00636 0.92088 0.87700 1.23324 0.82125 0.79336 0.85132 1.90581 1.57816 1.43175 1.50000 1.86494 1.23312 1.62931 1.51169 1.22796 0.95366 0.89214 0.88664 1.18864 0.88548 0.90445 0.97405 1.20379 1.09356 0.94246 1.27756 0.92019 1.24914 0.95355 0.98999 0.93673 1.69861 1.23219 1.32917 1.25938 0.86657 0.78875 0.84496 0.78046 1.20022 1.21249 1.20137 1.22941 1.03350 1.03365 0.93142 1.22936 1.02628 1.05002 0.93922 1.22161 1.02643 1.00463 0.93091 1.22583 0.81101 0.99867 0.97930 1.87947 1.20979 1.77445 1.43066 0.91018 0.91842 0.91720 0.91598 0.91769 0.91255 0.89943 0.90234 0.95434 0.87215 0.92722 0.89748 0.91489 0.91342 0.90267 0.89137 0.90638 0.88482 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.85 37.15 0.33 -1.02 16 2 C 0.11 1.32 1.11 -90.58 -0.10 1.22 16 3 C -0.18 -1.92 7.93 37.16 0.29 -1.63 16 4 C -0.13 -1.76 3.61 -26.60 -0.10 -1.85 16 5 C -0.08 -1.31 2.41 -91.59 -0.22 -1.53 16 6 H 0.11 1.57 6.62 -51.93 -0.34 1.23 16 7 C 0.46 9.48 7.19 36.00 0.26 9.74 16 8 O -0.53 -12.02 15.65 -18.75 -0.29 -12.31 16 9 O -0.32 -7.62 9.95 -39.27 -0.39 -8.01 16 10 C 0.11 2.79 4.70 37.16 0.17 2.96 16 11 C 0.05 1.19 2.05 -155.66 -0.32 0.87 16 12 C -0.48 -12.95 8.75 -34.44 -0.30 -13.25 16 13 H 0.06 1.65 7.84 -52.49 -0.41 1.24 16 14 C 0.07 1.98 5.25 -17.82 -0.09 1.88 16 15 N -0.88 -24.62 10.96 55.43 0.61 -24.02 16 16 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.19 -4.27 9.96 -26.72 -0.27 -4.54 16 21 C -0.21 -4.47 9.92 -26.72 -0.27 -4.74 16 22 C -0.15 -1.95 5.40 -26.60 -0.14 -2.10 16 23 C 0.06 0.69 6.52 37.20 0.24 0.94 16 24 O -0.37 -4.75 10.24 -35.23 -0.36 -5.11 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.71 4.98 -51.93 -0.26 0.46 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.25 7.90 -51.92 -0.41 0.84 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 34 H 0.11 3.02 6.07 -51.93 -0.32 2.70 16 35 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 36 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -29.84 343.27 -7.91 -37.75 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.12 Total: 3.79 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.51 Total: -13.04 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.61 Total: -24.02 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.05 Total: -25.43 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.84 -7.91 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342689594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.660 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds