Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47363 * 2 1 4 4 C 1.52999 * 109.46861 * 240.00349 * 2 1 3 5 5 C 1.50698 * 109.47248 * 60.00021 * 4 2 1 6 6 H 1.07994 * 119.99944 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00024 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99903 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47026 * 89.99494 * 9 7 5 11 11 H 1.48495 * 109.47061 * 209.99672 * 9 7 5 12 12 H 1.48502 * 109.46744 * 329.99779 * 9 7 5 13 13 C 1.53000 * 109.46952 * 120.00422 * 2 1 3 14 14 O 1.45192 * 109.47109 * 299.99743 * 13 2 1 15 15 C 1.34230 * 117.00018 * 180.02562 * 14 13 2 16 16 O 1.20826 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00046 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 15 20 20 C 1.34597 * 126.43783 * 125.00017 * 19 18 17 21 21 N 1.31072 * 106.67933 * 180.02562 * 20 19 18 22 22 N 1.28839 * 107.98903 * 359.97438 * 21 20 19 23 23 N 1.28743 * 109.40039 * 359.73711 * 22 21 20 24 24 H 1.08998 * 109.46733 * 299.99802 * 1 2 3 25 25 H 1.08997 * 109.46671 * 59.99738 * 1 2 3 26 26 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47015 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47368 * 300.00287 * 3 2 1 29 29 H 1.09000 * 109.46454 * 59.99898 * 3 2 1 30 30 H 1.09001 * 109.47487 * 180.02562 * 4 2 1 31 31 H 1.09008 * 109.47307 * 299.99955 * 4 2 1 32 32 H 0.97003 * 119.99958 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46829 * 179.97438 * 13 2 1 34 34 H 1.08998 * 109.47230 * 60.00045 * 13 2 1 35 35 H 1.09002 * 109.47060 * 299.99765 * 17 15 14 36 36 H 1.09001 * 109.47380 * 59.99853 * 17 15 14 37 37 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 38 38 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 39 39 H 1.08006 * 126.66195 * 0.03258 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9172 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6263 -1.5513 -3.8527 9 14 1.2482 0.3990 -5.2572 10 1 2.2271 1.4400 -5.6614 11 1 1.0824 -0.5800 -6.3614 12 1 -0.0595 1.0375 -4.9612 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0370 2.4347 15 6 1.9172 -0.5468 3.6228 16 8 2.6141 -1.5326 3.6705 17 6 1.4523 0.1097 4.8971 18 6 1.9994 -0.6639 6.0984 19 7 1.5480 -0.0254 7.3372 20 6 0.8807 -0.6180 8.3448 21 7 0.6724 0.3048 9.2521 22 7 1.1855 1.4065 8.8242 23 7 1.7206 1.2091 7.6700 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9564 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 -0.7216 -1.2492 31 1 1.6767 -1.7489 -1.2494 32 1 2.8607 -1.8827 -4.7338 33 1 3.1301 -0.7217 1.2490 34 1 1.6767 -1.7490 1.2491 35 1 1.8154 1.1369 4.9301 36 1 0.3628 0.1083 4.9301 37 1 1.6359 -1.6910 6.0652 38 1 3.0889 -0.6630 6.0656 39 1 0.5760 -1.6529 8.3960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343530845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = 13.493686 kcal Electronic energy + Delta-G solvation = -21547.246119 eV Core-core repulsion = 18106.623696 eV Total energy + Delta-G solvation = -3440.622423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.55448 -40.62543 -37.66156 -36.46661 -35.57760 -32.93127 -32.44260 -32.04073 -27.67262 -26.92941 -26.50801 -25.89499 -24.21530 -23.37921 -22.69949 -20.80020 -18.62316 -18.37621 -17.50329 -17.24482 -16.76363 -16.43084 -16.21435 -15.82162 -15.11497 -14.61282 -13.94326 -13.79319 -13.56340 -13.27298 -13.04331 -12.62997 -12.49326 -12.38597 -12.12531 -12.06891 -11.55168 -11.37762 -11.31252 -11.03715 -10.90723 -10.77520 -10.72623 -10.69268 -10.46617 -10.43682 -10.28507 -9.85115 -9.31303 -9.03112 -8.43170 -6.07478 -4.08888 0.83742 1.43461 1.88607 2.00544 2.66006 3.27126 3.34228 3.36419 3.66317 3.84078 3.95012 4.32728 4.38085 4.49168 4.70700 4.83400 5.02167 5.10347 5.27896 5.30552 5.34147 5.37880 5.68042 5.69786 5.89852 6.07090 6.26109 6.40946 6.45638 6.61696 6.64900 7.01354 7.02020 7.04438 7.52015 7.60897 7.63094 7.90677 8.21763 8.31894 8.95342 9.54686 11.04096 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.051363 B = 0.002612 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.013218 B =10715.596282 C =10960.216786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.079 3.921 14 O -0.345 6.345 15 C 0.466 3.534 16 O -0.514 6.514 17 C -0.132 4.132 18 C 0.127 3.873 19 N -0.309 5.309 20 C 0.164 3.836 21 N -0.309 5.309 22 N -0.075 5.075 23 N -0.090 5.090 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 -0.021 19.182 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.059 4.059 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 O -0.260 6.260 15 C 0.309 3.691 16 O -0.403 6.403 17 C -0.171 4.171 18 C 0.006 3.994 19 N -0.111 5.111 20 C -0.135 4.135 21 N -0.157 5.157 22 N -0.069 5.069 23 N -0.077 5.077 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.607 0.872 19.543 19.735 hybrid contribution -0.152 -0.807 -1.539 1.745 sum -2.760 0.065 18.003 18.214 Atomic orbital electron populations 1.21725 0.94774 1.00943 1.00935 1.20836 0.96190 0.96276 0.92597 1.21726 1.00076 0.95661 1.00953 1.19133 0.96407 0.95292 0.89401 1.21133 1.31370 1.12140 0.90253 0.92061 1.25016 0.95261 0.95060 0.99163 1.69960 1.36914 1.23005 1.23573 0.86607 0.79255 0.79404 0.82831 1.20688 1.21294 1.19853 1.23609 0.99118 0.95962 0.80656 1.86488 1.69014 1.55740 1.14754 1.22896 0.77745 0.82373 0.86136 1.90704 1.35721 1.25632 1.88268 1.21514 1.04543 1.02469 0.88558 1.22032 1.03075 0.96900 0.77389 1.48764 1.37333 1.07720 1.17329 1.27817 0.97303 1.03162 0.85199 1.75033 1.19534 0.96599 1.24503 1.78680 1.08776 1.17344 1.02126 1.78921 1.19020 0.98152 1.11568 0.94251 0.91444 0.93738 0.93697 0.91454 0.94201 0.96315 0.96326 0.92963 0.91317 0.91350 0.85744 0.86651 0.85537 0.86320 0.74746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.08 37.16 0.30 -1.94 16 2 C -0.06 -1.11 0.61 -154.50 -0.09 -1.20 16 3 C -0.13 -2.26 8.08 37.16 0.30 -1.96 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.31 7.65 -34.44 -0.26 -13.57 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.08 1.31 4.32 37.16 0.16 1.47 16 14 O -0.34 -4.79 8.88 -39.26 -0.35 -5.13 16 15 C 0.47 5.24 7.96 36.01 0.29 5.53 16 16 O -0.51 -6.93 15.73 -18.75 -0.29 -7.23 16 17 C -0.13 -0.91 5.96 -27.88 -0.17 -1.08 16 18 C 0.13 0.67 5.77 -4.04 -0.02 0.64 16 19 N -0.31 -2.22 3.44 -62.55 -0.22 -2.44 16 20 C 0.16 1.03 12.79 -90.39 -1.16 -0.13 16 21 N -0.31 -3.23 12.36 29.59 0.37 -2.87 16 22 N -0.07 -0.92 13.43 60.35 0.81 -0.11 16 23 N -0.09 -0.96 13.08 60.35 0.79 -0.17 16 24 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 25 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 29 H 0.04 0.62 7.68 -51.93 -0.40 0.22 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 34 H 0.07 1.14 8.13 -51.93 -0.42 0.71 16 35 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.13 0.37 8.04 -51.93 -0.42 -0.05 16 38 H 0.12 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.24 0.22 8.06 -52.48 -0.42 -0.21 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -32.77 333.67 -4.58 -37.34 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -5.56 Total: -5.04 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -0.87 Total: -10.08 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 2.49 Total: -30.70 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.64 Total: -12.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.77 -4.58 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343530845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.838 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds