Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47363 * 2 1 4 4 C 1.52999 * 109.46861 * 240.00349 * 2 1 3 5 5 C 1.50698 * 109.47248 * 60.00021 * 4 2 1 6 6 H 1.07994 * 119.99944 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00024 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99903 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47026 * 89.99494 * 9 7 5 11 11 H 1.48495 * 109.47061 * 209.99672 * 9 7 5 12 12 H 1.48502 * 109.46744 * 329.99779 * 9 7 5 13 13 C 1.53000 * 109.46952 * 120.00422 * 2 1 3 14 14 O 1.45192 * 109.47109 * 299.99743 * 13 2 1 15 15 C 1.34230 * 117.00018 * 180.02562 * 14 13 2 16 16 O 1.20826 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00046 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 15 14 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 15 20 20 C 1.34597 * 126.43783 * 125.00017 * 19 18 17 21 21 N 1.31072 * 106.67933 * 180.02562 * 20 19 18 22 22 N 1.28839 * 107.98903 * 359.97438 * 21 20 19 23 23 N 1.28743 * 109.40039 * 359.73711 * 22 21 20 24 24 H 1.08998 * 109.46733 * 299.99802 * 1 2 3 25 25 H 1.08997 * 109.46671 * 59.99738 * 1 2 3 26 26 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47015 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47368 * 300.00287 * 3 2 1 29 29 H 1.09000 * 109.46454 * 59.99898 * 3 2 1 30 30 H 1.09001 * 109.47487 * 180.02562 * 4 2 1 31 31 H 1.09008 * 109.47307 * 299.99955 * 4 2 1 32 32 H 0.97003 * 119.99958 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46829 * 179.97438 * 13 2 1 34 34 H 1.08998 * 109.47230 * 60.00045 * 13 2 1 35 35 H 1.09002 * 109.47060 * 299.99765 * 17 15 14 36 36 H 1.09001 * 109.47380 * 59.99853 * 17 15 14 37 37 H 1.09002 * 109.47153 * 299.99998 * 18 17 15 38 38 H 1.08998 * 109.47533 * 59.99628 * 18 17 15 39 39 H 1.08006 * 126.66195 * 0.03258 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9172 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6263 -1.5513 -3.8527 9 14 1.2482 0.3990 -5.2572 10 1 2.2271 1.4400 -5.6614 11 1 1.0824 -0.5800 -6.3614 12 1 -0.0595 1.0375 -4.9612 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0370 2.4347 15 6 1.9172 -0.5468 3.6228 16 8 2.6141 -1.5326 3.6705 17 6 1.4523 0.1097 4.8971 18 6 1.9994 -0.6639 6.0984 19 7 1.5480 -0.0254 7.3372 20 6 0.8807 -0.6180 8.3448 21 7 0.6724 0.3048 9.2521 22 7 1.1855 1.4065 8.8242 23 7 1.7206 1.2091 7.6700 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9564 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 -0.7216 -1.2492 31 1 1.6767 -1.7489 -1.2494 32 1 2.8607 -1.8827 -4.7338 33 1 3.1301 -0.7217 1.2490 34 1 1.6767 -1.7490 1.2491 35 1 1.8154 1.1369 4.9301 36 1 0.3628 0.1083 4.9301 37 1 1.6359 -1.6910 6.0652 38 1 3.0889 -0.6630 6.0656 39 1 0.5760 -1.6529 8.3960 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343530845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = -6.248411 kcal Electronic energy + Delta-G solvation = -21548.102201 eV Core-core repulsion = 18106.623696 eV Total energy + Delta-G solvation = -3441.478504 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.18478 -41.64161 -38.91522 -37.27948 -36.78756 -34.41578 -33.57243 -32.71359 -29.34740 -28.22921 -27.95535 -26.86242 -25.02978 -24.79799 -23.60302 -21.70187 -19.92501 -19.29392 -18.39144 -18.16974 -18.00005 -17.69697 -17.02003 -16.69804 -16.48974 -15.91158 -15.14678 -15.00893 -14.79937 -14.34961 -14.07029 -13.96345 -13.73564 -13.60979 -13.21103 -12.96859 -12.75075 -12.68015 -12.60277 -12.31493 -12.24652 -12.20673 -11.97504 -11.92443 -11.83476 -11.68162 -11.37183 -11.35107 -11.02898 -10.89379 -10.52538 -8.16203 -6.23340 0.25724 0.88925 1.10251 1.23305 1.42560 1.42964 1.53172 1.75872 2.43788 3.16748 3.18757 3.43043 3.50957 3.65771 3.82970 3.93049 3.95814 4.19424 4.23682 4.31771 4.44406 4.54011 4.61014 4.61384 4.73848 4.77144 5.01523 5.09553 5.14201 5.22545 5.43316 5.46224 5.47105 5.52579 5.53887 5.75148 5.87826 6.28419 6.62872 6.90718 7.44330 7.56113 8.96201 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.051363 B = 0.002612 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.013218 B =10715.596282 C =10960.216786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.056 4.056 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.070 0.930 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.091 3.909 14 O -0.347 6.347 15 C 0.469 3.531 16 O -0.536 6.536 17 C -0.120 4.120 18 C 0.128 3.872 19 N -0.304 5.304 20 C 0.186 3.814 21 N -0.345 5.345 22 N -0.111 5.111 23 N -0.111 5.111 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.067 0.933 30 H -0.010 1.010 31 H -0.008 1.008 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.119 0.881 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.236 0.224 20.201 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.185 1.185 13 C 0.017 3.983 14 O -0.263 6.263 15 C 0.313 3.687 16 O -0.426 6.426 17 C -0.158 4.158 18 C 0.008 3.992 19 N -0.106 5.106 20 C -0.112 4.112 21 N -0.193 5.193 22 N -0.105 5.105 23 N -0.098 5.098 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.009 0.991 31 H 0.011 0.989 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.137 0.863 39 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -3.871 1.134 20.582 20.973 hybrid contribution 0.262 -0.961 -1.797 2.055 sum -3.609 0.173 18.784 19.129 Atomic orbital electron populations 1.21651 0.93560 1.00973 1.01533 1.20628 0.97074 0.96428 0.91500 1.21659 0.99734 0.94890 1.01549 1.18995 0.94556 0.94419 0.91852 1.21538 1.30582 1.12073 0.91033 0.91203 1.25901 0.95649 0.95841 1.02576 1.70098 1.38656 1.24810 1.24178 0.85561 0.79151 0.78174 0.78872 1.20193 1.21403 1.18535 1.23129 0.98416 0.95452 0.81292 1.86461 1.69248 1.55662 1.14915 1.23652 0.76891 0.81996 0.86202 1.90706 1.36716 1.26820 1.88360 1.21526 1.05695 1.02185 0.86441 1.22216 1.03236 0.97810 0.75933 1.48853 1.37002 1.06922 1.17870 1.28739 0.94746 1.04241 0.83425 1.74956 1.20897 0.97163 1.26320 1.78659 1.10127 1.18697 1.03047 1.78850 1.19522 0.99958 1.11436 0.91402 0.92946 0.94032 0.94249 0.92852 0.91458 0.99114 0.98937 0.93078 0.92187 0.91829 0.85494 0.84641 0.82414 0.86302 0.69651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.08 71.98 0.58 -3.49 16 2 C -0.06 -2.09 0.61 -52.18 -0.03 -2.12 16 3 C -0.12 -4.18 8.08 71.98 0.58 -3.60 16 4 C 0.04 1.91 4.04 29.85 0.12 2.03 16 5 C -0.51 -27.06 7.65 25.60 0.20 -26.86 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -55.43 13.29 21.45 0.28 -55.14 16 9 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 13 C 0.09 2.93 4.32 71.98 0.31 3.24 16 14 O -0.35 -8.87 8.88 -51.41 -0.46 -9.33 16 15 C 0.47 9.39 7.96 71.24 0.57 9.96 16 16 O -0.54 -13.43 15.73 21.97 0.35 -13.08 16 17 C -0.12 -1.27 5.96 29.85 0.18 -1.09 16 18 C 0.13 0.91 5.77 86.38 0.50 1.41 16 19 N -0.30 -3.51 3.44 -351.82 -1.21 -4.72 16 20 C 0.19 1.73 12.79 180.27 2.31 4.04 16 21 N -0.35 -6.72 12.36 -60.29 -0.74 -7.46 16 22 N -0.11 -2.65 13.43 37.01 0.50 -2.16 16 23 N -0.11 -2.19 13.08 37.02 0.48 -1.71 16 24 H 0.07 1.91 7.68 -2.39 -0.02 1.89 16 25 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 29 H 0.07 1.94 7.68 -2.39 -0.02 1.92 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 32 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 34 H 0.06 2.10 8.13 -2.39 -0.02 2.08 16 35 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.16 0.19 8.04 -2.39 -0.02 0.17 16 38 H 0.12 0.93 8.10 -2.39 -0.02 0.91 16 39 H 0.29 -0.94 8.06 -2.91 -0.02 -0.97 16 Total: -1.00 -73.53 333.67 8.04 -65.49 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: 1.05 Total: -0.62 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 5.77 Total: -16.16 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -0.69 Total: -71.19 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.11 Total: -22.41 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.53 8.04 -65.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343530845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.241 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds